RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 Q6ZQT7 251 aa1.71□□□□□ -2.14
VPS13A-208ENST00000423463 Q6ZTI0 123 aa1.71□□□□□ -2.14
VPS13A-208ENST00000423463 Q86TA4 180 aa1.71□□□□□ -2.14
VPS13A-208ENST00000423463 BAGE2Q86Y30 109 aa1.71□□□□□ -2.14
VPS13A-208ENST00000423463 TMEM183AQ8IXX5 376 aa1.71□□□□□ -2.14
VPS13A-208ENST00000423463 C15orf53Q8NAA6 179 aa1.71□□□□□ -2.14
VPS13A-208ENST00000423463 TYMSOSQ8TAI1 123 aa1.71□□□□□ -2.14
VPS13A-208ENST00000423463 GNG13Q9P2W3 67 aa1.71□□□□□ -2.14
VPS13A-208ENST00000423463 TRGV2A0A075B6R0 118 aa1.71□□□□□ -2.14
VPS13A-208ENST00000423463 TRGV1A0A0A0MS02 117 aa1.71□□□□□ -2.14
VPS13A-208ENST00000423463 H3BNG1 76 aa1.71□□□□□ -2.14
VPS13A-208ENST00000423463 M0R2P5 195 aa1.71□□□□□ -2.14
VPS13A-208ENST00000423463 PDE6DO43924 150 aa1.71□□□□□ -2.14
VPS13A-208ENST00000423463 LY6G6CO95867 125 aa1.71□□□□□ -2.14
VPS13A-208ENST00000423463 LTAP01374 205 aa1.71□□□□□ -2.14
VPS13A-208ENST00000423463 TYMSP04818 313 aa1.71□□□□□ -2.14
VPS13A-208ENST00000423463 P0DMU3 169 aa1.71□□□□□ -2.14
VPS13A-208ENST00000423463 FAM231AP0DMU4 169 aa1.71□□□□□ -2.14
VPS13A-208ENST00000423463 FAM231CP0DMU5 169 aa1.71□□□□□ -2.14
VPS13A-208ENST00000423463 MEF2BQ02080 365 aaPredicted RBP1.71□□□□□ -2.14
VPS13A-208ENST00000423463 RNF212Q495C1 297 aa1.71□□□□□ -2.14
VPS13A-208ENST00000423463 DNLZQ5SXM8 178 aa1.71□□□□□ -2.14
VPS13A-208ENST00000423463 LCE3EQ5T5B0 92 aa1.71□□□□□ -2.14
VPS13A-208ENST00000423463 FAM162BQ5T6X4 162 aa1.71□□□□□ -2.14
VPS13A-208ENST00000423463 ALKAL2Q6UX46 152 aa1.71□□□□□ -2.14
VPS13A-208ENST00000423463 LYPD6BQ8NI32 183 aa1.71□□□□□ -2.14
VPS13A-208ENST00000423463 VAX2Q9UIW0 290 aa1.71□□□□□ -2.14
VPS13A-208ENST00000423463 NAGKQ9UJ70 344 aa1.71□□□□□ -2.14
VPS13A-208ENST00000423463 NDUFS6O75380 124 aaKnown RBP1.7□□□□□ -2.14
VPS13A-208ENST00000423463 ORM1P02763 201 aa1.7□□□□□ -2.14
VPS13A-208ENST00000423463 BCL2P10415 239 aa1.7□□□□□ -2.14
VPS13A-208ENST00000423463 ASIPP42127 132 aa1.7□□□□□ -2.14
VPS13A-208ENST00000423463 CRIP1P50238 77 aa1.7□□□□□ -2.14
VPS13A-208ENST00000423463 OR5I1Q13606 314 aa1.7□□□□□ -2.14
VPS13A-208ENST00000423463 SMIM12Q96EX1 92 aa1.7□□□□□ -2.14
VPS13A-208ENST00000423463 ZC2HC1AQ96GY0 325 aa1.7□□□□□ -2.14
VPS13A-208ENST00000423463 C9orf85Q96MD7 179 aa1.7□□□□□ -2.14
VPS13A-208ENST00000423463 BIN3Q9NQY0 253 aa1.7□□□□□ -2.14
VPS13A-208ENST00000423463 MED9Q9NWA0 146 aa1.7□□□□□ -2.14
VPS13A-208ENST00000423463 MRPL16Q9NX20 251 aaKnown RBP1.7□□□□□ -2.14
VPS13A-208ENST00000423463 PRO0255Q9UI72 69 aa1.7□□□□□ -2.14
VPS13A-208ENST00000423463 COL7A1Q02388 2944 aa1.7□□□□□ -2.14
VPS13A-208ENST00000423463 DNAH9Q9NYC9 4486 aa1.7□□□□□ -2.14
VPS13A-208ENST00000423463 TRAV4A0A0B4J268 109 aa1.7□□□□□ -2.14
VPS13A-208ENST00000423463 RBFOX3A6NFN3 312 aa1.7□□□□□ -2.14
VPS13A-208ENST00000423463 KRBOX1C9JBD0 128 aa1.7□□□□□ -2.14
VPS13A-208ENST00000423463 TMEM250H0YL14 139 aa1.7□□□□□ -2.14
VPS13A-208ENST00000423463 SH2D1AO60880 128 aa1.7□□□□□ -2.14
VPS13A-208ENST00000423463 CXCL1P09341 107 aa1.7□□□□□ -2.14
VPS13A-208ENST00000423463 RNASE3P12724 160 aaKnown RBP1.7□□□□□ -2.14
VPS13A-208ENST00000423463 S100A4P26447 101 aaKnown RBP1.7□□□□□ -2.14
VPS13A-208ENST00000423463 RPL35P42766 123 aaKnown RBP1.7□□□□□ -2.14
VPS13A-208ENST00000423463 CCL18P55774 89 aa1.7□□□□□ -2.14
VPS13A-208ENST00000423463 OR4C5Q8NGB2 326 aa1.7□□□□□ -2.14
VPS13A-208ENST00000423463 IL36BQ9NZH7 164 aa1.7□□□□□ -2.14
VPS13A-208ENST00000423463 TRAV26-1A0A087WT03 109 aa1.69□□□□□ -2.14
VPS13A-208ENST00000423463 TRGV4A0A0C4DH28 118 aa1.69□□□□□ -2.14
VPS13A-208ENST00000423463 RAB19A4D1S5 217 aa1.69□□□□□ -2.14
VPS13A-208ENST00000423463 A8MWV9 139 aa1.69□□□□□ -2.14
VPS13A-208ENST00000423463 B4DEV8 164 aa1.69□□□□□ -2.14
VPS13A-208ENST00000423463 C9JCJ5 164 aa1.69□□□□□ -2.14
VPS13A-208ENST00000423463 RS1O15537 224 aa1.69□□□□□ -2.14
VPS13A-208ENST00000423463 ARMS2P0C7Q2 107 aa1.69□□□□□ -2.14
VPS13A-208ENST00000423463 GNG4P50150 75 aa1.69□□□□□ -2.14
VPS13A-208ENST00000423463 CRYBA4P53673 196 aa1.69□□□□□ -2.14
VPS13A-208ENST00000423463 RPS20P60866 119 aaKnown RBP1.69□□□□□ -2.14
VPS13A-208ENST00000423463 MRPL23Q16540 153 aaKnown RBP1.69□□□□□ -2.14
VPS13A-208ENST00000423463 TEX261Q6UWH6 196 aa1.69□□□□□ -2.14
VPS13A-208ENST00000423463 UBE2DNLQ8IWF7 75 aa1.69□□□□□ -2.14
VPS13A-208ENST00000423463 VSIG2Q96IQ7 327 aa1.69□□□□□ -2.14
VPS13A-208ENST00000423463 HHLA3Q9XRX5 114 aa1.69□□□□□ -2.14
VPS13A-208ENST00000423463 A0A0J9YY99 117 aa1.69□□□□□ -2.14
VPS13A-208ENST00000423463 GRIFINA4D1Z8 144 aa1.69□□□□□ -2.14
VPS13A-208ENST00000423463 M0R036 132 aa1.69□□□□□ -2.14
VPS13A-208ENST00000423463 IGLV2-8P01709 118 aa1.69□□□□□ -2.14
VPS13A-208ENST00000423463 IGHV3-53P01767 116 aa1.69□□□□□ -2.14
VPS13A-208ENST00000423463 SFTA3P0C7M3 94 aa1.69□□□□□ -2.14
VPS13A-208ENST00000423463 HIGD2BQ4VC39 106 aa1.69□□□□□ -2.14
VPS13A-208ENST00000423463 CENPWQ5EE01 88 aa1.69□□□□□ -2.14
VPS13A-208ENST00000423463 CFAP126Q5VTH2 177 aa1.69□□□□□ -2.14
VPS13A-208ENST00000423463 ZFP2Q6ZN57 461 aa1.69□□□□□ -2.14
VPS13A-208ENST00000423463 SH2D6Q7Z4S9 175 aa1.69□□□□□ -2.14
VPS13A-208ENST00000423463 FAM210AQ96ND0 272 aa1.69□□□□□ -2.14
VPS13A-208ENST00000423463 DERL1Q9BUN8 251 aa1.69□□□□□ -2.14
VPS13A-208ENST00000423463 EIF5A2Q9GZV4 153 aaKnown RBP1.69□□□□□ -2.14
VPS13A-208ENST00000423463 SMDT1Q9H4I9 107 aa1.69□□□□□ -2.14
VPS13A-208ENST00000423463 PRR34Q9NV39 138 aa1.69□□□□□ -2.14
VPS13A-208ENST00000423463 ICOSQ9Y6W8 199 aa1.69□□□□□ -2.14
VPS13A-208ENST00000423463 LY96Q9Y6Y9 160 aa1.69□□□□□ -2.14
VPS13A-208ENST00000423463 TMSB15BA0A087X1C1 80 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 A0A096LPF7 62 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 TRBV6-4A0A1B0GX49 114 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 XKRY2A2RUG3 117 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 C19orf71A6NCJ1 209 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 H3BVH4 76 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 PHOX2AO14813 284 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 SNAI2O43623 268 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 OR5AL1P0C617 328 aa1.68□□□□□ -2.14
VPS13A-208ENST00000423463 MGST1P10620 155 aaKnown RBP1.68□□□□□ -2.14
VPS13A-208ENST00000423463 PEA15Q15121 130 aa1.68□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 165.8 ms