RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 ADARB2-AS1A8MUL3 147 aa7.94□□□□□ -1.14
USP54-204ENST00000422491 ZNF56Q15929 161 aa7.94□□□□□ -1.14
USP54-204ENST00000422491 FAM223AQ8IWN6 122 aa7.94□□□□□ -1.14
USP54-204ENST00000422491 C5orf56Q8N8D9 126 aa7.94□□□□□ -1.14
USP54-204ENST00000422491 CHCHD5Q9BSY4 110 aa7.94□□□□□ -1.14
USP54-204ENST00000422491 TNFRSF18Q9Y5U5 241 aa7.94□□□□□ -1.14
USP54-204ENST00000422491 ANKHD1Q8IWZ3 2542 aaKnown RBP7.94□□□□□ -1.14
USP54-204ENST00000422491 NDUFA4O00483 81 aa7.93□□□□□ -1.14
USP54-204ENST00000422491 GRNP28799 593 aaKnown RBP7.93□□□□□ -1.14
USP54-204ENST00000422491 ADAMTSL4-AS1Q5T5F5 129 aa7.93□□□□□ -1.14
USP54-204ENST00000422491 FAM74A4Q5TZK3 123 aa7.93□□□□□ -1.14
USP54-204ENST00000422491 DUX3Q96PT4 197 aa7.93□□□□□ -1.14
USP54-204ENST00000422491 EP300Q09472 2414 aaPredicted RBP7.93□□□□□ -1.14
USP54-204ENST00000422491 LST1O00453 97 aa7.93□□□□□ -1.14
USP54-204ENST00000422491 SAA4P35542 130 aa7.93□□□□□ -1.14
USP54-204ENST00000422491 CLEC2BQ92478 149 aa7.93□□□□□ -1.14
USP54-204ENST00000422491 LINC01587Q99440 93 aa7.93□□□□□ -1.14
USP54-204ENST00000422491 SPANXDQ9BXN6 97 aa7.93□□□□□ -1.14
USP54-204ENST00000422491 SPANXCQ9NY87 97 aa7.93□□□□□ -1.14
USP54-204ENST00000422491 SPTBN2O15020 2390 aa7.93□□□□□ -1.14
USP54-204ENST00000422491 OTOGLQ3ZCN5 2332 aa7.93□□□□□ -1.14
USP54-204ENST00000422491 Q6ZSV7 163 aa7.93□□□□□ -1.14
USP54-204ENST00000422491 ZFHX3Q15911 3703 aa7.92□□□□□ -1.14
USP54-204ENST00000422491 ACACAQ13085 2346 aa7.92□□□□□ -1.14
USP54-204ENST00000422491 TRAV41A0A0B4J266 112 aa7.92□□□□□ -1.14
USP54-204ENST00000422491 RPL11P62913 178 aaKnown RBP7.92□□□□□ -1.14
USP54-204ENST00000422491 C9orf85Q96MD7 179 aa7.92□□□□□ -1.14
USP54-204ENST00000422491 SPXQ9BT56 116 aa7.92□□□□□ -1.14
USP54-204ENST00000422491 LINC00527Q9UJ94 153 aa7.92□□□□□ -1.14
USP54-204ENST00000422491 IGKV3-7A0A075B6H7 116 aa7.92□□□□□ -1.14
USP54-204ENST00000422491 PRSS2P07478 247 aa7.92□□□□□ -1.14
USP54-204ENST00000422491 COX6CP09669 75 aa7.92□□□□□ -1.14
USP54-204ENST00000422491 C11orf71Q6IPW1 123 aa7.92□□□□□ -1.14
USP54-204ENST00000422491 FAM104AQ969W3 186 aa7.92□□□□□ -1.14
USP54-204ENST00000422491 TIMM21Q9BVV7 248 aa7.92□□□□□ -1.14
USP54-204ENST00000422491 TMEM126AQ9H061 195 aa7.92□□□□□ -1.14
USP54-204ENST00000422491 TRGV11A0A075B6L2 103 aa7.91□□□□□ -1.14
USP54-204ENST00000422491 TMEM95Q3KNT9 176 aa7.91□□□□□ -1.14
USP54-204ENST00000422491 MED13LQ71F56 2210 aa7.91□□□□□ -1.14
USP54-204ENST00000422491 TRAV8-3A0A0A6YYJ7 113 aa7.91□□□□□ -1.14
USP54-204ENST00000422491 MRPS36P82909 103 aaKnown RBP7.91□□□□□ -1.14
USP54-204ENST00000422491 MIAQ16674 131 aa7.91□□□□□ -1.14
USP54-204ENST00000422491 AKAP13Q12802 2813 aa7.91□□□□□ -1.14
USP54-204ENST00000422491 TRAV12-3A0A0B4J271 114 aa7.9□□□□□ -1.14
USP54-204ENST00000422491 IGHV3-16A0A0C4DH30 117 aa7.9□□□□□ -1.14
USP54-204ENST00000422491 I3L3M4 83 aa7.9□□□□□ -1.14
USP54-204ENST00000422491 TMEM61Q8N0U2 210 aa7.9□□□□□ -1.14
USP54-204ENST00000422491 PRRC2AP48634 2157 aaKnown RBP7.9□□□□□ -1.14
USP54-204ENST00000422491 IGHV1-58A0A0C4DH39 117 aa7.9□□□□□ -1.15
USP54-204ENST00000422491 ASH1LQ9NR48 2969 aaKnown RBP7.9□□□□□ -1.15
USP54-204ENST00000422491 HRNRQ86YZ3 2850 aaPredicted RBP7.9□□□□□ -1.15
USP54-204ENST00000422491 C3orf56Q8N813 242 aa7.89□□□□□ -1.15
USP54-204ENST00000422491 TMEM101Q96IK0 257 aa7.89□□□□□ -1.15
USP54-204ENST00000422491 NDUFA12Q9UI09 145 aa7.89□□□□□ -1.15
USP54-204ENST00000422491 VPREB3Q9UKI3 123 aa7.89□□□□□ -1.15
USP54-204ENST00000422491 TMEM219Q86XT9 240 aa7.89□□□□□ -1.15
USP54-204ENST00000422491 RHPN1-AS1Q9BWJ2 59 aa7.89□□□□□ -1.15
USP54-204ENST00000422491 FBXL19-AS1Q494R0 122 aa7.88□□□□□ -1.15
USP54-204ENST00000422491 IMUPQ9GZP8 106 aa7.88□□□□□ -1.15
USP54-204ENST00000422491 PYGO1Q9Y3Y4 419 aa7.88□□□□□ -1.15
USP54-204ENST00000422491 FAM236AA0A1B0GUQ0 79 aa7.88□□□□□ -1.15
USP54-204ENST00000422491 FAM236BA0A1B0GV22 79 aa7.88□□□□□ -1.15
USP54-204ENST00000422491 NPC2P61916 151 aa7.88□□□□□ -1.15
USP54-204ENST00000422491 GVINP1Q7Z2Y8 2422 aa7.88□□□□□ -1.15
USP54-204ENST00000422491 CD28P10747 220 aa7.88□□□□□ -1.15
USP54-204ENST00000422491 VSIG2Q96IQ7 327 aa7.88□□□□□ -1.15
USP54-204ENST00000422491 LY6DQ14210 128 aa7.87□□□□□ -1.15
USP54-204ENST00000422491 PPDPFQ9H3Y8 114 aa7.87□□□□□ -1.15
USP54-204ENST00000422491 MOB4Q9Y3A3 225 aa7.87□□□□□ -1.15
USP54-204ENST00000422491 A8MZ25 164 aa7.87□□□□□ -1.15
USP54-204ENST00000422491 NPFFO15130 113 aa7.87□□□□□ -1.15
USP54-204ENST00000422491 CEMP1Q6PRD7 247 aaPredicted RBP7.87□□□□□ -1.15
USP54-204ENST00000422491 ZFHX2Q9C0A1 2572 aaPredicted RBP7.86□□□□□ -1.15
USP54-204ENST00000422491 IGHV3-11P01762 117 aa7.86□□□□□ -1.15
USP54-204ENST00000422491 ACYP1P07311 99 aa7.86□□□□□ -1.15
USP54-204ENST00000422491 SMCR5Q8TEV8 140 aa7.86□□□□□ -1.15
USP54-204ENST00000422491 DCANP1Q8TF63 244 aa7.86□□□□□ -1.15
USP54-204ENST00000422491 EDN2P20800 178 aa7.86□□□□□ -1.15
USP54-204ENST00000422491 TIMM17BO60830 172 aa7.85□□□□□ -1.15
USP54-204ENST00000422491 YAE1D1Q9NRH1 226 aa7.85□□□□□ -1.15
USP54-204ENST00000422491 TRAV12-2A0A075B6T6 113 aa7.85□□□□□ -1.15
USP54-204ENST00000422491 TINCRA0A1B0GVN0 87 aa7.85□□□□□ -1.15
USP54-204ENST00000422491 CDSNQ15517 529 aa7.85□□□□□ -1.15
USP54-204ENST00000422491 RNASE13Q5GAN3 156 aaKnown RBP7.85□□□□□ -1.15
USP54-204ENST00000422491 USMG5Q96IX5 58 aa7.85□□□□□ -1.15
USP54-204ENST00000422491 CITED2Q99967 270 aaPredicted RBP7.85□□□□□ -1.15
USP54-204ENST00000422491 DAZ1Q9NQZ3 744 aaKnown RBP7.85□□□□□ -1.15
USP54-204ENST00000422491 MUC6Q6W4X9 2439 aa7.85□□□□□ -1.15
USP54-204ENST00000422491 RIF1Q5UIP0 2472 aaKnown RBP7.84□□□□□ -1.15
USP54-204ENST00000422491 ID1P41134 155 aa7.84□□□□□ -1.15
USP54-204ENST00000422491 SDIM1Q6ZPB5 146 aa7.84□□□□□ -1.15
USP54-204ENST00000422491 IGHV1OR15-1A0A075B7D0 117 aa7.83□□□□□ -1.16
USP54-204ENST00000422491 C3orf22Q8N5N4 141 aa7.83□□□□□ -1.16
USP54-204ENST00000422491 DAND5Q8N907 189 aa7.83□□□□□ -1.16
USP54-204ENST00000422491 LINC00643Q86TS7 51 aa7.83□□□□□ -1.16
USP54-204ENST00000422491 EDA2RQ9HAV5 297 aa7.83□□□□□ -1.16
USP54-204ENST00000422491 H3BUA1 57 aa7.82□□□□□ -1.16
USP54-204ENST00000422491 NDUFA7O95182 113 aa7.82□□□□□ -1.16
USP54-204ENST00000422491 IGHG2P01859 326 aa7.82□□□□□ -1.16
USP54-204ENST00000422491 LINC00694P0DN24 101 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms