RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 FOXA3P55318 350 aaPredicted RBP8.52□□□□□ -1.05
SKA1-203ENST00000417656 UBE2D3P61077 147 aa8.52□□□□□ -1.05
SKA1-203ENST00000417656 UBE2D2P62837 147 aa8.52□□□□□ -1.05
SKA1-203ENST00000417656 TTC32Q5I0X7 151 aa8.52□□□□□ -1.05
SKA1-203ENST00000417656 Q8N3U1 123 aa8.52□□□□□ -1.05
SKA1-203ENST00000417656 TRBV7-3A0A075B6L6 115 aa8.51□□□□□ -1.05
SKA1-203ENST00000417656 M0QY20 66 aa8.51□□□□□ -1.05
SKA1-203ENST00000417656 PNRC1Q12796 327 aaPredicted RBP8.51□□□□□ -1.05
SKA1-203ENST00000417656 OR10J3Q5JRS4 329 aa8.51□□□□□ -1.05
SKA1-203ENST00000417656 LELP1Q5T871 98 aa8.51□□□□□ -1.05
SKA1-203ENST00000417656 NUP35Q8NFH5 326 aa8.51□□□□□ -1.05
SKA1-203ENST00000417656 NAT8BQ9UHF3 227 aa8.51□□□□□ -1.05
SKA1-203ENST00000417656 DNAH2Q9P225 4427 aa8.5□□□□□ -1.05
SKA1-203ENST00000417656 TRAV26-2A0A0B4J265 109 aa8.5□□□□□ -1.05
SKA1-203ENST00000417656 IGHV3-38A0A0C4DH36 116 aa8.5□□□□□ -1.05
SKA1-203ENST00000417656 SMIM27A0A1W2PRY6 76 aa8.5□□□□□ -1.05
SKA1-203ENST00000417656 H7C1H1 209 aa8.5□□□□□ -1.05
SKA1-203ENST00000417656 SMIM15Q7Z3B0 74 aa8.5□□□□□ -1.05
SKA1-203ENST00000417656 TRAV8-6A0A0B4J262 113 aa8.49□□□□□ -1.05
SKA1-203ENST00000417656 TMEM218A2RU14 115 aa8.49□□□□□ -1.05
SKA1-203ENST00000417656 LINC00862A6NCI5 91 aa8.49□□□□□ -1.05
SKA1-203ENST00000417656 RTL8CO15255 209 aa8.49□□□□□ -1.05
SKA1-203ENST00000417656 DNAH10OSP0CZ25 163 aa8.49□□□□□ -1.05
SKA1-203ENST00000417656 C1orf134Q5TEV5 83 aa8.49□□□□□ -1.05
SKA1-203ENST00000417656 RASL11AQ6T310 242 aa8.49□□□□□ -1.05
SKA1-203ENST00000417656 F8W036 122 aa8.48□□□□□ -1.05
SKA1-203ENST00000417656 RIGQ13278 110 aa8.48□□□□□ -1.05
SKA1-203ENST00000417656 C6orf223Q8N319 242 aa8.48□□□□□ -1.05
SKA1-203ENST00000417656 EPPK1P58107 5090 aaKnown RBP8.48□□□□□ -1.05
SKA1-203ENST00000417656 FRAS1Q86XX4 4008 aa8.47□□□□□ -1.05
SKA1-203ENST00000417656 A0A087WWC5 75 aa8.47□□□□□ -1.05
SKA1-203ENST00000417656 PPP1R2P9O14990 202 aa8.47□□□□□ -1.05
SKA1-203ENST00000417656 LINC01556Q5JQF7 62 aa8.47□□□□□ -1.05
SKA1-203ENST00000417656 GATD1Q8NB37 220 aa8.47□□□□□ -1.05
SKA1-203ENST00000417656 DNAJC30Q96LL9 226 aa8.47□□□□□ -1.05
SKA1-203ENST00000417656 TMEM191AQ9H0A3 160 aa8.47□□□□□ -1.05
SKA1-203ENST00000417656 TNFRSF18Q9Y5U5 241 aa8.47□□□□□ -1.05
SKA1-203ENST00000417656 A6NJY4 79 aa8.46□□□□□ -1.06
SKA1-203ENST00000417656 IGHV3-30P01768 117 aa8.46□□□□□ -1.06
SKA1-203ENST00000417656 IGHV3-33P01772 117 aa8.46□□□□□ -1.06
SKA1-203ENST00000417656 MT-ND4LP03901 98 aa8.46□□□□□ -1.06
SKA1-203ENST00000417656 IGHV3-30-3P0DP02 117 aa8.46□□□□□ -1.06
SKA1-203ENST00000417656 IGHV3-30-5P0DP03 117 aa8.46□□□□□ -1.06
SKA1-203ENST00000417656 MRPL54Q6P161 138 aaKnown RBP8.46□□□□□ -1.06
SKA1-203ENST00000417656 AMN1Q8IY45 258 aa8.46□□□□□ -1.06
SKA1-203ENST00000417656 RPL39LQ96EH5 51 aaKnown RBP8.46□□□□□ -1.06
SKA1-203ENST00000417656 NIT2Q9NQR4 276 aa8.46□□□□□ -1.06
SKA1-203ENST00000417656 CAMPP49913 170 aa8.45□□□□□ -1.06
SKA1-203ENST00000417656 LINC00336Q6ZUF6 198 aa8.45□□□□□ -1.06
SKA1-203ENST00000417656 DAZ4Q86SG3 579 aaKnown RBP8.45□□□□□ -1.06
SKA1-203ENST00000417656 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.45□□□□□ -1.06
SKA1-203ENST00000417656 ANAPC16Q96DE5 110 aa8.45□□□□□ -1.06
SKA1-203ENST00000417656 RNF185Q96GF1 192 aa8.45□□□□□ -1.06
SKA1-203ENST00000417656 SEC11CQ9BY50 192 aa8.45□□□□□ -1.06
SKA1-203ENST00000417656 DAZ3Q9NR90 486 aaKnown RBP8.45□□□□□ -1.06
SKA1-203ENST00000417656 DNAH17Q9UFH2 4485 aa8.45□□□□□ -1.06
SKA1-203ENST00000417656 FAT2Q9NYQ8 4349 aa8.44□□□□□ -1.06
SKA1-203ENST00000417656 TRAV9-2A0A087WT02 112 aa8.44□□□□□ -1.06
SKA1-203ENST00000417656 TRBV6-8A0A0A6YYG3 113 aa8.44□□□□□ -1.06
SKA1-203ENST00000417656 A0A1B0GXF2 115 aa8.44□□□□□ -1.06
SKA1-203ENST00000417656 PRSS29PA6NIE9 313 aa8.44□□□□□ -1.06
SKA1-203ENST00000417656 GAS8-AS1O95177 125 aa8.44□□□□□ -1.06
SKA1-203ENST00000417656 NTM-AS1Q6ZSK4 140 aa8.44□□□□□ -1.06
SKA1-203ENST00000417656 C10orf126Q8N4M7 172 aa8.44□□□□□ -1.06
SKA1-203ENST00000417656 NCR2O95944 276 aa8.43□□□□□ -1.06
SKA1-203ENST00000417656 RAB4AP20338 218 aa8.43□□□□□ -1.06
SKA1-203ENST00000417656 HBBP68871 147 aa8.43□□□□□ -1.06
SKA1-203ENST00000417656 NIT1Q86X76 327 aa8.43□□□□□ -1.06
SKA1-203ENST00000417656 DEFB104AQ8WTQ1 72 aa8.43□□□□□ -1.06
SKA1-203ENST00000417656 A0A1B0GW15 77 aa8.42□□□□□ -1.06
SKA1-203ENST00000417656 SMKR1H3BMG3 65 aa8.42□□□□□ -1.06
SKA1-203ENST00000417656 K7EP13 123 aa8.42□□□□□ -1.06
SKA1-203ENST00000417656 RPS10P46783 165 aaKnown RBP8.42□□□□□ -1.06
SKA1-203ENST00000417656 TNP2Q05952 138 aa8.42□□□□□ -1.06
SKA1-203ENST00000417656 TMEM97Q5BJF2 176 aa8.42□□□□□ -1.06
SKA1-203ENST00000417656 Q6ZRN7 208 aaPredicted RBP8.42□□□□□ -1.06
SKA1-203ENST00000417656 FRZBQ92765 325 aa8.42□□□□□ -1.06
SKA1-203ENST00000417656 MRAP2Q96G30 205 aa8.42□□□□□ -1.06
SKA1-203ENST00000417656 CHCHD5Q9BSY4 110 aa8.42□□□□□ -1.06
SKA1-203ENST00000417656 CARHSP1Q9Y2V2 147 aaKnown RBP8.42□□□□□ -1.06
SKA1-203ENST00000417656 IGHV1-24A0A0C4DH33 117 aa8.41□□□□□ -1.06
SKA1-203ENST00000417656 S100A8P05109 93 aa8.41□□□□□ -1.06
SKA1-203ENST00000417656 BTF3P20290 206 aaKnown RBP8.41□□□□□ -1.06
SKA1-203ENST00000417656 C10orf91Q5T1B1 145 aa8.41□□□□□ -1.06
SKA1-203ENST00000417656 FAM104BQ5XKR9 115 aa8.41□□□□□ -1.06
SKA1-203ENST00000417656 KCNIP4Q6PIL6 250 aa8.41□□□□□ -1.06
SKA1-203ENST00000417656 ATP5L2Q7Z4Y8 100 aa8.41□□□□□ -1.06
SKA1-203ENST00000417656 URGCP-MRPS24S4R325 110 aa8.41□□□□□ -1.06
SKA1-203ENST00000417656 BIRC6Q9NR09 4857 aa8.4□□□□□ -1.06
SKA1-203ENST00000417656 TRBV25-1A0A075B6N4 114 aa8.4□□□□□ -1.06
SKA1-203ENST00000417656 SDHAF1A6NFY7 115 aa8.4□□□□□ -1.06
SKA1-203ENST00000417656 IBA57-AS1B1ANH7 110 aa8.4□□□□□ -1.06
SKA1-203ENST00000417656 IQCJQ1A5X6 159 aa8.4□□□□□ -1.06
SKA1-203ENST00000417656 MRPL51Q4U2R6 128 aaKnown RBP8.4□□□□□ -1.06
SKA1-203ENST00000417656 MPV17L2Q567V2 206 aa8.4□□□□□ -1.06
SKA1-203ENST00000417656 Q9HAA7 133 aa8.4□□□□□ -1.06
SKA1-203ENST00000417656 A0A087WX48 190 aa8.39□□□□□ -1.07
SKA1-203ENST00000417656 TRBV6-5A0A0K0K1A5 114 aa8.39□□□□□ -1.07
SKA1-203ENST00000417656 A0A1B0GVY2 172 aa8.39□□□□□ -1.07
SKA1-203ENST00000417656 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms