RNA–Protein interactions for RNA: ENST00000416649.6

NCKIPSD-204, Transcript of NCK interacting protein with SH3 domain, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NCKIPSD, Length 2,925 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-204ENST00000416649 MDFICQ9P1T7 246 aa11.08□□□□□ -0.63
NCKIPSD-204ENST00000416649 ZNF580Q9UK33 172 aa11.08□□□□□ -0.63
NCKIPSD-204ENST00000416649 A0A087WWL8 130 aa11.08□□□□□ -0.64
NCKIPSD-204ENST00000416649 IGIPA6NJ69 53 aa11.08□□□□□ -0.64
NCKIPSD-204ENST00000416649 LY6LH3BQJ8 138 aa11.08□□□□□ -0.64
NCKIPSD-204ENST00000416649 P0DMU3 169 aa11.08□□□□□ -0.64
NCKIPSD-204ENST00000416649 FAM231AP0DMU4 169 aa11.08□□□□□ -0.64
NCKIPSD-204ENST00000416649 FAM231CP0DMU5 169 aa11.08□□□□□ -0.64
NCKIPSD-204ENST00000416649 RNASE4P34096 147 aaKnown RBP11.08□□□□□ -0.64
NCKIPSD-204ENST00000416649 Q6ZSV7 163 aa11.08□□□□□ -0.64
NCKIPSD-204ENST00000416649 RPL13AP40429 203 aaKnown RBP11.07□□□□□ -0.64
NCKIPSD-204ENST00000416649 TLN2Q9Y4G6 2542 aa11.07□□□□□ -0.64
NCKIPSD-204ENST00000416649 TRGV11A0A075B6L2 103 aa11.07□□□□□ -0.64
NCKIPSD-204ENST00000416649 LINC00694P0DN24 101 aa11.07□□□□□ -0.64
NCKIPSD-204ENST00000416649 ZNF22P17026 224 aaPredicted RBP11.07□□□□□ -0.64
NCKIPSD-204ENST00000416649 MRPL23Q16540 153 aaKnown RBP11.07□□□□□ -0.64
NCKIPSD-204ENST00000416649 FAM74A4Q5TZK3 123 aa11.07□□□□□ -0.64
NCKIPSD-204ENST00000416649 GPHB5Q86YW7 130 aa11.07□□□□□ -0.64
NCKIPSD-204ENST00000416649 A0A0B4J2C4 111 aa11.06□□□□□ -0.64
NCKIPSD-204ENST00000416649 H7C423 109 aa11.06□□□□□ -0.64
NCKIPSD-204ENST00000416649 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.06□□□□□ -0.64
NCKIPSD-204ENST00000416649 LOC107984640A0A0U1RRK4 108 aa11.06□□□□□ -0.64
NCKIPSD-204ENST00000416649 ZFAND3Q9H8U3 227 aa11.06□□□□□ -0.64
NCKIPSD-204ENST00000416649 ZANQ9Y493 2812 aa11.05□□□□□ -0.64
NCKIPSD-204ENST00000416649 UBE2E1P51965 193 aa11.05□□□□□ -0.64
NCKIPSD-204ENST00000416649 ATP5J2P56134 94 aa11.05□□□□□ -0.64
NCKIPSD-204ENST00000416649 C9orf153Q5TBE3 101 aa11.05□□□□□ -0.64
NCKIPSD-204ENST00000416649 C9orf47Q6ZRZ4 202 aa11.05□□□□□ -0.64
NCKIPSD-204ENST00000416649 NPBQ8NG41 125 aa11.05□□□□□ -0.64
NCKIPSD-204ENST00000416649 LINC01587Q99440 93 aa11.05□□□□□ -0.64
NCKIPSD-204ENST00000416649 NACAE9PAV3 2078 aa11.05□□□□□ -0.64
NCKIPSD-204ENST00000416649 OOSP1A8MZH6 123 aa11.05□□□□□ -0.64
NCKIPSD-204ENST00000416649 RPL11P62913 178 aaKnown RBP11.05□□□□□ -0.64
NCKIPSD-204ENST00000416649 METTL26Q96S19 204 aa11.05□□□□□ -0.64
NCKIPSD-204ENST00000416649 TRAV8-3A0A0A6YYJ7 113 aa11.05□□□□□ -0.64
NCKIPSD-204ENST00000416649 TRAV21A0A0B4J279 112 aa11.05□□□□□ -0.64
NCKIPSD-204ENST00000416649 CEMP1Q6PRD7 247 aaPredicted RBP11.05□□□□□ -0.64
NCKIPSD-204ENST00000416649 TMEM126AQ9H061 195 aa11.05□□□□□ -0.64
NCKIPSD-204ENST00000416649 IGHV3OR16-10A0A075B7F0 116 aa11.04□□□□□ -0.64
NCKIPSD-204ENST00000416649 IGHV1-69DA0A0B4J2H0 117 aa11.04□□□□□ -0.64
NCKIPSD-204ENST00000416649 SDHAF1A6NFY7 115 aa11.04□□□□□ -0.64
NCKIPSD-204ENST00000416649 FBXL19-AS1Q494R0 122 aa11.04□□□□□ -0.64
NCKIPSD-204ENST00000416649 CLPSL1A2RUU4 121 aa11.04□□□□□ -0.64
NCKIPSD-204ENST00000416649 F6UB75 175 aa11.04□□□□□ -0.64
NCKIPSD-204ENST00000416649 M0R2P5 195 aa11.04□□□□□ -0.64
NCKIPSD-204ENST00000416649 ZNF876PQ49A33 203 aa11.04□□□□□ -0.64
NCKIPSD-204ENST00000416649 C20orf173Q96LM9 149 aa11.04□□□□□ -0.64
NCKIPSD-204ENST00000416649 MUC4Q99102 2169 aa11.04□□□□□ -0.64
NCKIPSD-204ENST00000416649 CCDC168Q8NDH2 2452 aa11.03□□□□□ -0.64
NCKIPSD-204ENST00000416649 COX6CP09669 75 aa11.03□□□□□ -0.64
NCKIPSD-204ENST00000416649 TMEM101Q96IK0 257 aa11.03□□□□□ -0.64
NCKIPSD-204ENST00000416649 SPXQ9BT56 116 aa11.03□□□□□ -0.64
NCKIPSD-204ENST00000416649 KLK5Q9Y337 293 aaPredicted RBP11.03□□□□□ -0.64
NCKIPSD-204ENST00000416649 ICOSQ9Y6W8 199 aa11.03□□□□□ -0.64
NCKIPSD-204ENST00000416649 PPP1R17O96001 155 aa11.03□□□□□ -0.64
NCKIPSD-204ENST00000416649 TMEM141Q96I45 108 aa11.03□□□□□ -0.64
NCKIPSD-204ENST00000416649 SPANXA1Q9NS26 97 aa11.03□□□□□ -0.64
NCKIPSD-204ENST00000416649 PRRC2AP48634 2157 aaKnown RBP11.03□□□□□ -0.64
NCKIPSD-204ENST00000416649 A0A0J9YXV3 536 aa11.02□□□□□ -0.64
NCKIPSD-204ENST00000416649 ITLN2Q8WWU7 325 aaPredicted RBP11.02□□□□□ -0.64
NCKIPSD-204ENST00000416649 EEF1AKMT3Q96AZ1 226 aa11.02□□□□□ -0.64
NCKIPSD-204ENST00000416649 LEPROTO15243 131 aa11.02□□□□□ -0.65
NCKIPSD-204ENST00000416649 ZFAND2AQ8N6M9 145 aa11.02□□□□□ -0.65
NCKIPSD-204ENST00000416649 IGHV7-81A0A0B4J1V7 117 aa11.02□□□□□ -0.65
NCKIPSD-204ENST00000416649 TRBV30A0A0K0K1B3 111 aa11.02□□□□□ -0.65
NCKIPSD-204ENST00000416649 VCYO14598 125 aa11.02□□□□□ -0.65
NCKIPSD-204ENST00000416649 SUMO4Q6EEV6 95 aa11.02□□□□□ -0.65
NCKIPSD-204ENST00000416649 CHD6Q8TD26 2715 aa11.01□□□□□ -0.65
NCKIPSD-204ENST00000416649 G3V318 75 aa11.01□□□□□ -0.65
NCKIPSD-204ENST00000416649 TRAV12-3A0A0B4J271 114 aa11.01□□□□□ -0.65
NCKIPSD-204ENST00000416649 A0A0J9YXY3 114 aa11.01□□□□□ -0.65
NCKIPSD-204ENST00000416649 TMEM223A0PJW6 202 aa11.01□□□□□ -0.65
NCKIPSD-204ENST00000416649 TIMM17AQ99595 171 aa11.01□□□□□ -0.65
NCKIPSD-204ENST00000416649 RNASE3P12724 160 aaKnown RBP11□□□□□ -0.65
NCKIPSD-204ENST00000416649 ANKRD17O75179 2603 aaKnown RBP10.99□□□□□ -0.65
NCKIPSD-204ENST00000416649 POLR2KP53803 58 aaKnown RBP10.99□□□□□ -0.65
NCKIPSD-204ENST00000416649 CCDC140Q96MF4 163 aa10.99□□□□□ -0.65
NCKIPSD-204ENST00000416649 CSDC2Q9Y534 153 aaKnown RBP10.99□□□□□ -0.65
NCKIPSD-204ENST00000416649 NAV2Q8IVL1 2488 aa10.99□□□□□ -0.65
NCKIPSD-204ENST00000416649 NRGNQ92686 78 aa10.98□□□□□ -0.65
NCKIPSD-204ENST00000416649 DUX5Q96PT3 197 aa10.98□□□□□ -0.65
NCKIPSD-204ENST00000416649 H3BT86 120 aa10.98□□□□□ -0.65
NCKIPSD-204ENST00000416649 ATP6V0E1O15342 81 aa10.98□□□□□ -0.65
NCKIPSD-204ENST00000416649 HERVK_113P63121 156 aa10.97□□□□□ -0.65
NCKIPSD-204ENST00000416649 RNASE13Q5GAN3 156 aaKnown RBP10.97□□□□□ -0.65
NCKIPSD-204ENST00000416649 VMO1Q7Z5L0 202 aa10.97□□□□□ -0.65
NCKIPSD-204ENST00000416649 MRPL53Q96EL3 112 aaKnown RBP10.97□□□□□ -0.65
NCKIPSD-204ENST00000416649 A8MZ25 164 aa10.97□□□□□ -0.65
NCKIPSD-204ENST00000416649 NPFFO15130 113 aa10.97□□□□□ -0.65
NCKIPSD-204ENST00000416649 ADAMTSL4-AS1Q5T5F5 129 aa10.97□□□□□ -0.65
NCKIPSD-204ENST00000416649 DAND5Q8N907 189 aa10.97□□□□□ -0.65
NCKIPSD-204ENST00000416649 LINC00477Q96M19 166 aa10.97□□□□□ -0.65
NCKIPSD-204ENST00000416649 NDUFA7O95182 113 aa10.96□□□□□ -0.65
NCKIPSD-204ENST00000416649 IGHV3-30-3P0DP02 117 aa10.96□□□□□ -0.65
NCKIPSD-204ENST00000416649 ZFP36P26651 326 aaKnown RBP10.96□□□□□ -0.65
NCKIPSD-204ENST00000416649 TRBV7-7A0A0K0K1E9 115 aa10.96□□□□□ -0.66
NCKIPSD-204ENST00000416649 I3L3M4 83 aa10.96□□□□□ -0.66
NCKIPSD-204ENST00000416649 LINC00315P59091 139 aa10.96□□□□□ -0.66
NCKIPSD-204ENST00000416649 C11orf71Q6IPW1 123 aa10.96□□□□□ -0.66
NCKIPSD-204ENST00000416649 TIMM21Q9BVV7 248 aa10.96□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms