RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 TRBV6-5A0A0K0K1A5 114 aa7.26□□□□□ -1.25
SS18-203ENST00000415083 MSMBP08118 114 aa7.26□□□□□ -1.25
SS18-203ENST00000415083 PROK1P58294 105 aa7.26□□□□□ -1.25
SS18-203ENST00000415083 H7C2G1 150 aa7.26□□□□□ -1.25
SS18-203ENST00000415083 MT-ATP8P03928 68 aa7.26□□□□□ -1.25
SS18-203ENST00000415083 FOXI1Q12951 378 aa7.26□□□□□ -1.25
SS18-203ENST00000415083 PMVKQ15126 192 aa7.26□□□□□ -1.25
SS18-203ENST00000415083 HIST2H2BDQ6DRA6 164 aa7.26□□□□□ -1.25
SS18-203ENST00000415083 CCL19Q99731 98 aa7.26□□□□□ -1.25
SS18-203ENST00000415083 K7EQG2 157 aa7.26□□□□□ -1.25
SS18-203ENST00000415083 DEFB112Q30KQ8 113 aa7.26□□□□□ -1.25
SS18-203ENST00000415083 C18orf65Q6ZTR6 163 aa7.26□□□□□ -1.25
SS18-203ENST00000415083 NDUFA11Q86Y39 141 aa7.26□□□□□ -1.25
SS18-203ENST00000415083 CARD19Q96LW7 228 aa7.26□□□□□ -1.25
SS18-203ENST00000415083 IGHV3-64A0A075B6Q5 118 aa7.25□□□□□ -1.25
SS18-203ENST00000415083 F5H697 171 aa7.25□□□□□ -1.25
SS18-203ENST00000415083 FAM159AQ6UWV7 190 aa7.25□□□□□ -1.25
SS18-203ENST00000415083 DUX5Q96PT3 197 aa7.25□□□□□ -1.25
SS18-203ENST00000415083 CR1P17927 2039 aa7.25□□□□□ -1.25
SS18-203ENST00000415083 A0A1B0GV72 72 aa7.25□□□□□ -1.25
SS18-203ENST00000415083 SPINK13Q1W4C9 94 aa7.25□□□□□ -1.25
SS18-203ENST00000415083 TMEM170BQ5T4T1 132 aa7.25□□□□□ -1.25
SS18-203ENST00000415083 FAM74A4Q5TZK3 123 aa7.25□□□□□ -1.25
SS18-203ENST00000415083 DLX4Q92988 240 aaPredicted RBP7.25□□□□□ -1.25
SS18-203ENST00000415083 TIMM17AQ99595 171 aa7.25□□□□□ -1.25
SS18-203ENST00000415083 KIR2DL4Q99706 377 aa7.25□□□□□ -1.25
SS18-203ENST00000415083 USP9YO00507 2555 aaPredicted RBP7.25□□□□□ -1.25
SS18-203ENST00000415083 CHD6Q8TD26 2715 aa7.25□□□□□ -1.25
SS18-203ENST00000415083 TRAV26-1A0A087WT03 109 aa7.24□□□□□ -1.25
SS18-203ENST00000415083 CDIP1Q9H305 208 aa7.24□□□□□ -1.25
SS18-203ENST00000415083 ZNF256Q9Y2P7 627 aaPredicted RBP7.24□□□□□ -1.25
SS18-203ENST00000415083 ANKRD17O75179 2603 aaKnown RBP7.24□□□□□ -1.25
SS18-203ENST00000415083 RBMY1BA6NDE4 496 aaKnown RBP7.24□□□□□ -1.25
SS18-203ENST00000415083 RBMY1EA6NEQ0 496 aaKnown RBP7.24□□□□□ -1.25
SS18-203ENST00000415083 ELANEP08246 267 aa7.24□□□□□ -1.25
SS18-203ENST00000415083 SPINK8P0C7L1 97 aa7.24□□□□□ -1.25
SS18-203ENST00000415083 RBMY1DP0C7P1 496 aaKnown RBP7.24□□□□□ -1.25
SS18-203ENST00000415083 Q6ZSN1 163 aa7.24□□□□□ -1.25
SS18-203ENST00000415083 SLC25A29Q8N8R3 303 aa7.24□□□□□ -1.25
SS18-203ENST00000415083 MAPK1IP1LQ8NDC0 245 aa7.24□□□□□ -1.25
SS18-203ENST00000415083 RAX2Q96IS3 184 aa7.24□□□□□ -1.25
SS18-203ENST00000415083 VCYO14598 125 aa7.24□□□□□ -1.25
SS18-203ENST00000415083 SCGB1C2P0DMR2 95 aa7.24□□□□□ -1.25
SS18-203ENST00000415083 C1QTNF4Q9BXJ3 329 aa7.24□□□□□ -1.25
SS18-203ENST00000415083 UBR5O95071 2799 aaPredicted RBP7.24□□□□□ -1.25
SS18-203ENST00000415083 TCL1BO95988 128 aa7.23□□□□□ -1.25
SS18-203ENST00000415083 TMEM223A0PJW6 202 aa7.23□□□□□ -1.25
SS18-203ENST00000415083 XGP55808 180 aa7.23□□□□□ -1.25
SS18-203ENST00000415083 ATP5J2P56134 94 aa7.23□□□□□ -1.25
SS18-203ENST00000415083 NSUN5P1Q3KNT7 163 aa7.23□□□□□ -1.25
SS18-203ENST00000415083 SCGB1A1P11684 91 aa7.23□□□□□ -1.25
SS18-203ENST00000415083 C10orf126Q8N4M7 172 aa7.23□□□□□ -1.25
SS18-203ENST00000415083 TMEM141Q96I45 108 aa7.23□□□□□ -1.25
SS18-203ENST00000415083 GEMIN7Q9H840 131 aaKnown RBP7.23□□□□□ -1.25
SS18-203ENST00000415083 ANK3Q12955 4377 aaKnown RBP7.22□□□□□ -1.25
SS18-203ENST00000415083 ZNF22P17026 224 aaPredicted RBP7.22□□□□□ -1.25
SS18-203ENST00000415083 CEMP1Q6PRD7 247 aaPredicted RBP7.22□□□□□ -1.25
SS18-203ENST00000415083 RNF152Q8N8N0 203 aa7.22□□□□□ -1.25
SS18-203ENST00000415083 ODF3Q96PU9 254 aa7.22□□□□□ -1.25
SS18-203ENST00000415083 IGLV4-3A0A075B6K6 122 aa7.22□□□□□ -1.25
SS18-203ENST00000415083 SYNJ2BPP57105 145 aa7.22□□□□□ -1.25
SS18-203ENST00000415083 LITAFQ99732 161 aa7.22□□□□□ -1.25
SS18-203ENST00000415083 CACNA1AO00555 2505 aa7.21□□□□□ -1.25
SS18-203ENST00000415083 PPP1R17O96001 155 aa7.21□□□□□ -1.25
SS18-203ENST00000415083 SBSPONQ8IVN8 264 aa7.21□□□□□ -1.25
SS18-203ENST00000415083 SETXQ7Z333 2677 aaKnown RBP7.21□□□□□ -1.26
SS18-203ENST00000415083 IGHV1OR15-1A0A075B7D0 117 aa7.21□□□□□ -1.26
SS18-203ENST00000415083 A0A0J9YXV3 536 aa7.21□□□□□ -1.26
SS18-203ENST00000415083 TMEM238LA0A1B0GVL6 79 aa7.21□□□□□ -1.26
SS18-203ENST00000415083 A6NJY4 79 aa7.21□□□□□ -1.26
SS18-203ENST00000415083 J3QQQ9 107 aa7.21□□□□□ -1.26
SS18-203ENST00000415083 C20orf203Q8NBC4 194 aa7.21□□□□□ -1.26
SS18-203ENST00000415083 IGHV3-73A0A0B4J1V6 119 aa7.2□□□□□ -1.26
SS18-203ENST00000415083 CRYBA4P53673 196 aa7.2□□□□□ -1.26
SS18-203ENST00000415083 ZNF56Q15929 161 aa7.2□□□□□ -1.26
SS18-203ENST00000415083 TRPT1Q86TN4 253 aaKnown RBP7.2□□□□□ -1.26
SS18-203ENST00000415083 MYO18BQ8IUG5 2567 aa7.2□□□□□ -1.26
SS18-203ENST00000415083 KNCNA6PVL3 124 aa7.2□□□□□ -1.26
SS18-203ENST00000415083 ADARB2-AS1A8MUL3 147 aa7.2□□□□□ -1.26
SS18-203ENST00000415083 GATA3P23771 443 aa7.2□□□□□ -1.26
SS18-203ENST00000415083 TMEM263Q8WUH6 116 aaKnown RBP7.2□□□□□ -1.26
SS18-203ENST00000415083 ZNF702PQ9H963 129 aa7.2□□□□□ -1.26
SS18-203ENST00000415083 BEX4Q9NWD9 120 aaPredicted RBP7.2□□□□□ -1.26
SS18-203ENST00000415083 A8MZ25 164 aa7.2□□□□□ -1.26
SS18-203ENST00000415083 ID1P41134 155 aa7.2□□□□□ -1.26
SS18-203ENST00000415083 DEFB136Q30KP8 78 aa7.2□□□□□ -1.26
SS18-203ENST00000415083 Q6ZUT4 128 aa7.2□□□□□ -1.26
SS18-203ENST00000415083 APCP25054 2843 aa7.19□□□□□ -1.26
SS18-203ENST00000415083 RHODO00212 210 aa7.19□□□□□ -1.26
SS18-203ENST00000415083 RNASE13Q5GAN3 156 aaKnown RBP7.19□□□□□ -1.26
SS18-203ENST00000415083 NOTCH3Q9UM47 2321 aa7.19□□□□□ -1.26
SS18-203ENST00000415083 PRRC2AP48634 2157 aaKnown RBP7.19□□□□□ -1.26
SS18-203ENST00000415083 TRAV2A0A0B4J234 112 aa7.19□□□□□ -1.26
SS18-203ENST00000415083 ANKRD29Q8N6D5 301 aa7.19□□□□□ -1.26
SS18-203ENST00000415083 A4D1N5 150 aa7.18□□□□□ -1.26
SS18-203ENST00000415083 HOXD3P31249 432 aaPredicted RBP7.18□□□□□ -1.26
SS18-203ENST00000415083 ADAMTSL4-AS1Q5T5F5 129 aa7.18□□□□□ -1.26
SS18-203ENST00000415083 A8MTW9 85 aa7.18□□□□□ -1.26
SS18-203ENST00000415083 B4DSR2 109 aa7.18□□□□□ -1.26
SS18-203ENST00000415083 LEPROTO15243 131 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 120.5 ms