RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 TCL1BO95988 128 aa10.43□□□□□ -0.74
CCDC88A-204ENST00000413716 MIR7-3HGQ8N6C7 128 aa10.43□□□□□ -0.74
CCDC88A-204ENST00000413716 NDUFA11Q86Y39 141 aa10.43□□□□□ -0.74
CCDC88A-204ENST00000413716 PIFOQ8TCI5 191 aa10.43□□□□□ -0.74
CCDC88A-204ENST00000413716 E9PLD3 99 aa10.43□□□□□ -0.74
CCDC88A-204ENST00000413716 MIAQ16674 131 aa10.43□□□□□ -0.74
CCDC88A-204ENST00000413716 ARTNQ5T4W7 220 aa10.43□□□□□ -0.74
CCDC88A-204ENST00000413716 FAM222AQ5U5X8 452 aa10.42□□□□□ -0.74
CCDC88A-204ENST00000413716 LY6HO94772 140 aa10.42□□□□□ -0.74
CCDC88A-204ENST00000413716 LOXL1Q08397 574 aaPredicted RBP10.42□□□□□ -0.74
CCDC88A-204ENST00000413716 IGHV4-30-2A0A087WSY4 118 aa10.42□□□□□ -0.74
CCDC88A-204ENST00000413716 ZNF726P1Q15940 193 aa10.42□□□□□ -0.74
CCDC88A-204ENST00000413716 SP5Q6BEB4 398 aaPredicted RBP10.42□□□□□ -0.74
CCDC88A-204ENST00000413716 RNF138Q8WVD3 245 aa10.42□□□□□ -0.74
CCDC88A-204ENST00000413716 LMO1P25800 156 aa10.41□□□□□ -0.74
CCDC88A-204ENST00000413716 ZNRD1Q9P1U0 126 aa10.41□□□□□ -0.74
CCDC88A-204ENST00000413716 PRYO14603 147 aa10.41□□□□□ -0.74
CCDC88A-204ENST00000413716 SNURFQ9Y675 71 aa10.41□□□□□ -0.74
CCDC88A-204ENST00000413716 MT-ATP8P03928 68 aa10.41□□□□□ -0.74
CCDC88A-204ENST00000413716 DEFB112Q30KQ8 113 aa10.41□□□□□ -0.74
CCDC88A-204ENST00000413716 GTSF1Q8WW33 167 aa10.41□□□□□ -0.74
CCDC88A-204ENST00000413716 Q8TCH9 128 aa10.4□□□□□ -0.74
CCDC88A-204ENST00000413716 UNQ6494/PRO21346Q6UXR6 183 aa10.4□□□□□ -0.74
CCDC88A-204ENST00000413716 MYO18BQ8IUG5 2567 aa10.4□□□□□ -0.74
CCDC88A-204ENST00000413716 CCDC168Q8NDH2 2452 aa10.4□□□□□ -0.75
CCDC88A-204ENST00000413716 A0A0J9YXV3 536 aa10.39□□□□□ -0.75
CCDC88A-204ENST00000413716 WT1-ASQ06250 92 aa10.39□□□□□ -0.75
CCDC88A-204ENST00000413716 PTPRSQ13332 1948 aa10.39□□□□□ -0.75
CCDC88A-204ENST00000413716 RPL39P62891 51 aaKnown RBP10.39□□□□□ -0.75
CCDC88A-204ENST00000413716 MRPS36P82909 103 aaKnown RBP10.39□□□□□ -0.75
CCDC88A-204ENST00000413716 VPREB3Q9UKI3 123 aa10.39□□□□□ -0.75
CCDC88A-204ENST00000413716 E7EQL1 145 aa10.39□□□□□ -0.75
CCDC88A-204ENST00000413716 LRCOL1A6NCL2 159 aa10.39□□□□□ -0.75
CCDC88A-204ENST00000413716 CD59P13987 128 aa10.38□□□□□ -0.75
CCDC88A-204ENST00000413716 COA6Q5JTJ3 125 aaKnown RBP10.38□□□□□ -0.75
CCDC88A-204ENST00000413716 IGLV3-19P01714 112 aa10.38□□□□□ -0.75
CCDC88A-204ENST00000413716 GATA1P15976 413 aaPredicted RBP10.38□□□□□ -0.75
CCDC88A-204ENST00000413716 SERTAD4-AS1Q5TG53 156 aa10.38□□□□□ -0.75
CCDC88A-204ENST00000413716 TRBV27A0A0K0K1C4 114 aa10.38□□□□□ -0.75
CCDC88A-204ENST00000413716 MAPK1IP1LQ8NDC0 245 aa10.38□□□□□ -0.75
CCDC88A-204ENST00000413716 GPR179Q6PRD1 2367 aa10.38□□□□□ -0.75
CCDC88A-204ENST00000413716 RAI1Q7Z5J4 1906 aaPredicted RBP10.38□□□□□ -0.75
CCDC88A-204ENST00000413716 GP9P14770 177 aa10.37□□□□□ -0.75
CCDC88A-204ENST00000413716 SCXQ7RTU7 201 aa10.37□□□□□ -0.75
CCDC88A-204ENST00000413716 APRG1Q8IVJ8 170 aa10.37□□□□□ -0.75
CCDC88A-204ENST00000413716 LINC00311Q8N616 119 aa10.37□□□□□ -0.75
CCDC88A-204ENST00000413716 ZNF581Q9P0T4 197 aa10.37□□□□□ -0.75
CCDC88A-204ENST00000413716 BDP1A6H8Y1 2624 aa10.37□□□□□ -0.75
CCDC88A-204ENST00000413716 HIGD2AQ9BW72 106 aa10.36□□□□□ -0.75
CCDC88A-204ENST00000413716 TMEM263Q8WUH6 116 aaKnown RBP10.36□□□□□ -0.75
CCDC88A-204ENST00000413716 MED14OSP0DP75 135 aa10.36□□□□□ -0.75
CCDC88A-204ENST00000413716 CSRP1P21291 193 aaKnown RBP10.36□□□□□ -0.75
CCDC88A-204ENST00000413716 UFSP1Q6NVU6 142 aa10.36□□□□□ -0.75
CCDC88A-204ENST00000413716 UBE2D4Q9Y2X8 147 aa10.36□□□□□ -0.75
CCDC88A-204ENST00000413716 IGHV4-30-4P0DP06 118 aa10.35□□□□□ -0.75
CCDC88A-204ENST00000413716 IGHV4-31P0DP07 118 aa10.35□□□□□ -0.75
CCDC88A-204ENST00000413716 C17orf58Q2M2W7 97 aa10.35□□□□□ -0.75
CCDC88A-204ENST00000413716 KLK12Q9UKR0 248 aa10.35□□□□□ -0.75
CCDC88A-204ENST00000413716 IMUPQ9GZP8 106 aa10.35□□□□□ -0.75
CCDC88A-204ENST00000413716 CSRP3P50461 194 aa10.35□□□□□ -0.75
CCDC88A-204ENST00000413716 NFE4Q86UQ8 179 aa10.35□□□□□ -0.75
CCDC88A-204ENST00000413716 TPSG1Q9NRR2 321 aa10.35□□□□□ -0.75
CCDC88A-204ENST00000413716 MUC6Q6W4X9 2439 aa10.35□□□□□ -0.75
CCDC88A-204ENST00000413716 CDPF1Q6NVV7 123 aa10.35□□□□□ -0.75
CCDC88A-204ENST00000413716 Q0VFX4 171 aa10.34□□□□□ -0.75
CCDC88A-204ENST00000413716 DEFB136Q30KP8 78 aa10.34□□□□□ -0.75
CCDC88A-204ENST00000413716 AGPAT4-IT1Q9H0P7 198 aa10.34□□□□□ -0.75
CCDC88A-204ENST00000413716 Q8N9W7 124 aa10.34□□□□□ -0.75
CCDC88A-204ENST00000413716 IGHV4-38-2P0DP08 117 aa10.34□□□□□ -0.75
CCDC88A-204ENST00000413716 A0A087WZ39 114 aa10.34□□□□□ -0.75
CCDC88A-204ENST00000413716 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.33□□□□□ -0.76
CCDC88A-204ENST00000413716 UBE2D1P51668 147 aa10.33□□□□□ -0.76
CCDC88A-204ENST00000413716 ODF1Q14990 250 aa10.33□□□□□ -0.76
CCDC88A-204ENST00000413716 Q6ZVQ6 151 aa10.33□□□□□ -0.76
CCDC88A-204ENST00000413716 C3orf84H3BNL1 204 aa10.33□□□□□ -0.76
CCDC88A-204ENST00000413716 LOXP28300 417 aaPredicted RBP10.33□□□□□ -0.76
CCDC88A-204ENST00000413716 TDRG1Q3Y452 100 aa10.33□□□□□ -0.76
CCDC88A-204ENST00000413716 IGKV2-24A0A0C4DH68 120 aa10.33□□□□□ -0.76
CCDC88A-204ENST00000413716 CCKP06307 115 aa10.33□□□□□ -0.76
CCDC88A-204ENST00000413716 LRRC75A-AS1Q8N1F1 130 aa10.33□□□□□ -0.76
CCDC88A-204ENST00000413716 UBE2D3P61077 147 aa10.33□□□□□ -0.76
CCDC88A-204ENST00000413716 UBE2D2P62837 147 aa10.32□□□□□ -0.76
CCDC88A-204ENST00000413716 ZNF706Q9Y5V0 76 aaPredicted RBP10.32□□□□□ -0.76
CCDC88A-204ENST00000413716 C1orf158Q8N1D5 194 aa10.32□□□□□ -0.76
CCDC88A-204ENST00000413716 WFDC10AQ9H1F0 79 aa10.32□□□□□ -0.76
CCDC88A-204ENST00000413716 IGKV1D-37A0A075B6S9 117 aa10.31□□□□□ -0.76
CCDC88A-204ENST00000413716 Q8NFD4 153 aa10.31□□□□□ -0.76
CCDC88A-204ENST00000413716 MDFICQ9P1T7 246 aa10.31□□□□□ -0.76
CCDC88A-204ENST00000413716 IGHV4-61A0A0C4DH41 118 aa10.31□□□□□ -0.76
CCDC88A-204ENST00000413716 SLURP1P55000 103 aa10.31□□□□□ -0.76
CCDC88A-204ENST00000413716 FAM19A1Q7Z5A9 133 aa10.31□□□□□ -0.76
CCDC88A-204ENST00000413716 TMEM223A0PJW6 202 aa10.31□□□□□ -0.76
CCDC88A-204ENST00000413716 IL17DQ8TAD2 202 aa10.31□□□□□ -0.76
CCDC88A-204ENST00000413716 CSDC2Q9Y534 153 aaKnown RBP10.31□□□□□ -0.76
CCDC88A-204ENST00000413716 EPOPA6NHQ4 379 aa10.31□□□□□ -0.76
CCDC88A-204ENST00000413716 CRIPAKQ8N1N5 446 aa10.31□□□□□ -0.76
CCDC88A-204ENST00000413716 SMIM26A0A096LP01 95 aa10.3□□□□□ -0.76
CCDC88A-204ENST00000413716 ZFAND3Q9H8U3 227 aa10.3□□□□□ -0.76
CCDC88A-204ENST00000413716 WT1P19544 449 aaPredicted RBP10.3□□□□□ -0.76
CCDC88A-204ENST00000413716 LINC00173Q6ZV60 143 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 225.1 ms