RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 HTN3P15516 51 aa13.96□□□□□ -0.17
USP48-204ENST00000400301 TIMM17AQ99595 171 aa13.96□□□□□ -0.18
USP48-204ENST00000400301 PTPRBP23467 1997 aa13.95□□□□□ -0.18
USP48-204ENST00000400301 ATXN8Q156A1 80 aa13.95□□□□□ -0.18
USP48-204ENST00000400301 TMEM61Q8N0U2 210 aa13.95□□□□□ -0.18
USP48-204ENST00000400301 DEFB130BP0DP73 79 aa13.94□□□□□ -0.18
USP48-204ENST00000400301 DEFB130AP0DP74 79 aa13.94□□□□□ -0.18
USP48-204ENST00000400301 SH2D6Q7Z4S9 175 aa13.94□□□□□ -0.18
USP48-204ENST00000400301 GAGE7O76087 117 aa13.94□□□□□ -0.18
USP48-204ENST00000400301 SPINK8P0C7L1 97 aa13.94□□□□□ -0.18
USP48-204ENST00000400301 GAGE12FP0CL80 117 aa13.94□□□□□ -0.18
USP48-204ENST00000400301 GAGE12GP0CL81 117 aa13.94□□□□□ -0.18
USP48-204ENST00000400301 GAGE12IP0CL82 117 aa13.94□□□□□ -0.18
USP48-204ENST00000400301 LINC00158P58513 81 aa13.94□□□□□ -0.18
USP48-204ENST00000400301 OPRPNQ99935 248 aaPredicted RBP13.94□□□□□ -0.18
USP48-204ENST00000400301 K7EQG2 157 aa13.94□□□□□ -0.18
USP48-204ENST00000400301 COX8CQ7Z4L0 72 aa13.93□□□□□ -0.18
USP48-204ENST00000400301 EYSQ5T1H1 3165 aa13.93□□□□□ -0.18
USP48-204ENST00000400301 PKD1L2Q7Z442 2459 aa13.93□□□□□ -0.18
USP48-204ENST00000400301 A0A096LNJ9 63 aa13.93□□□□□ -0.18
USP48-204ENST00000400301 C2orf82Q6UX34 121 aa13.93□□□□□ -0.18
USP48-204ENST00000400301 MAPKAPK5-AS1Q8N8E1 139 aa13.93□□□□□ -0.18
USP48-204ENST00000400301 SPAG8Q99932 426 aaPredicted RBP13.93□□□□□ -0.18
USP48-204ENST00000400301 WFDC2Q14508 124 aa13.92□□□□□ -0.18
USP48-204ENST00000400301 CCL24O00175 119 aa13.91□□□□□ -0.18
USP48-204ENST00000400301 NEXN-AS1Q8NBZ9 246 aa13.91□□□□□ -0.18
USP48-204ENST00000400301 LEPROTO15243 131 aa13.91□□□□□ -0.18
USP48-204ENST00000400301 RNASE3P12724 160 aaKnown RBP13.91□□□□□ -0.18
USP48-204ENST00000400301 PRRC2AP48634 2157 aaKnown RBP13.9□□□□□ -0.18
USP48-204ENST00000400301 AVPP01185 164 aa13.9□□□□□ -0.18
USP48-204ENST00000400301 C20orf203Q8NBC4 194 aa13.9□□□□□ -0.18
USP48-204ENST00000400301 IGHV4-4A0A075B6R2 117 aa13.89□□□□□ -0.19
USP48-204ENST00000400301 RNASE1P07998 156 aaKnown RBP13.89□□□□□ -0.19
USP48-204ENST00000400301 C11orf68Q9H3H3 251 aaKnown RBP13.89□□□□□ -0.19
USP48-204ENST00000400301 TRAV8-4A0A0B4J246 113 aa13.89□□□□□ -0.19
USP48-204ENST00000400301 ZNF462Q96JM2 2506 aa13.88□□□□□ -0.19
USP48-204ENST00000400301 A4D1N5 150 aa13.88□□□□□ -0.19
USP48-204ENST00000400301 PSMB8P28062 276 aa13.88□□□□□ -0.19
USP48-204ENST00000400301 TRAV8-3A0A0A6YYJ7 113 aa13.88□□□□□ -0.19
USP48-204ENST00000400301 PPDPFLQ8WWR9 84 aa13.88□□□□□ -0.19
USP48-204ENST00000400301 GAGE12HA6NDE8 117 aa13.88□□□□□ -0.19
USP48-204ENST00000400301 IGLV1-40P01703 118 aa13.88□□□□□ -0.19
USP48-204ENST00000400301 NOP10Q9NPE3 64 aaKnown RBP13.88□□□□□ -0.19
USP48-204ENST00000400301 SPANXA1Q9NS26 97 aa13.88□□□□□ -0.19
USP48-204ENST00000400301 CFC1BP0CG36 223 aa13.87□□□□□ -0.19
USP48-204ENST00000400301 CFC1P0CG37 223 aa13.87□□□□□ -0.19
USP48-204ENST00000400301 TMEM243Q9BU79 118 aa13.87□□□□□ -0.19
USP48-204ENST00000400301 TM2D2Q9BX73 214 aa13.87□□□□□ -0.19
USP48-204ENST00000400301 CFAP161Q6P656 301 aa13.87□□□□□ -0.19
USP48-204ENST00000400301 ODF3Q96PU9 254 aa13.87□□□□□ -0.19
USP48-204ENST00000400301 ZNF292O60281 2723 aa13.87□□□□□ -0.19
USP48-204ENST00000400301 P0DMU3 169 aa13.86□□□□□ -0.19
USP48-204ENST00000400301 FAM231AP0DMU4 169 aa13.86□□□□□ -0.19
USP48-204ENST00000400301 FAM231CP0DMU5 169 aa13.86□□□□□ -0.19
USP48-204ENST00000400301 SPTBN5Q9NRC6 3674 aaKnown RBP13.86□□□□□ -0.19
USP48-204ENST00000400301 PIFOQ8TCI5 191 aa13.86□□□□□ -0.19
USP48-204ENST00000400301 KLLNB2CW77 178 aa13.85□□□□□ -0.19
USP48-204ENST00000400301 CRPP02741 224 aa13.85□□□□□ -0.19
USP48-204ENST00000400301 EDN2P20800 178 aa13.85□□□□□ -0.19
USP48-204ENST00000400301 MUSTN1Q8IVN3 82 aa13.85□□□□□ -0.19
USP48-204ENST00000400301 RNF152Q8N8N0 203 aa13.85□□□□□ -0.19
USP48-204ENST00000400301 DSPP15924 2871 aaKnown RBP13.85□□□□□ -0.19
USP48-204ENST00000400301 DOPEY1Q5JWR5 2465 aa13.85□□□□□ -0.19
USP48-204ENST00000400301 GAGE6Q13070 117 aa13.85□□□□□ -0.19
USP48-204ENST00000400301 PAX4O43316 350 aa13.84□□□□□ -0.19
USP48-204ENST00000400301 SLC25A20O43772 301 aa13.84□□□□□ -0.19
USP48-204ENST00000400301 C6orf226Q5I0X4 101 aa13.84□□□□□ -0.19
USP48-204ENST00000400301 Q6YL49 198 aa13.84□□□□□ -0.19
USP48-204ENST00000400301 CEMP1Q6PRD7 247 aaPredicted RBP13.84□□□□□ -0.19
USP48-204ENST00000400301 HHLA3Q9XRX5 114 aa13.84□□□□□ -0.19
USP48-204ENST00000400301 MTORP42345 2549 aa13.84□□□□□ -0.19
USP48-204ENST00000400301 RBMY1BA6NDE4 496 aaKnown RBP13.84□□□□□ -0.19
USP48-204ENST00000400301 RBMY1EA6NEQ0 496 aaKnown RBP13.84□□□□□ -0.19
USP48-204ENST00000400301 RBMY1DP0C7P1 496 aaKnown RBP13.84□□□□□ -0.19
USP48-204ENST00000400301 RBMY1A1P0DJD3 496 aaKnown RBP13.84□□□□□ -0.19
USP48-204ENST00000400301 RBMY1CP0DJD4 496 aa13.84□□□□□ -0.19
USP48-204ENST00000400301 MALP21145 153 aa13.84□□□□□ -0.19
USP48-204ENST00000400301 HERVK_113P63121 156 aa13.84□□□□□ -0.19
USP48-204ENST00000400301 LGALS9O00182 355 aa13.83□□□□□ -0.19
USP48-204ENST00000400301 C10orf126Q8N4M7 172 aa13.83□□□□□ -0.19
USP48-204ENST00000400301 TSPAN13O95857 204 aa13.83□□□□□ -0.2
USP48-204ENST00000400301 IGHV4-31P0DP07 118 aa13.83□□□□□ -0.2
USP48-204ENST00000400301 DCANP1Q8TF63 244 aa13.83□□□□□ -0.2
USP48-204ENST00000400301 CRIP2P52943 208 aaPredicted RBP13.83□□□□□ -0.2
USP48-204ENST00000400301 H3BMM0 161 aa13.82□□□□□ -0.2
USP48-204ENST00000400301 DNAJC30Q96LL9 226 aa13.82□□□□□ -0.2
USP48-204ENST00000400301 PSMG3-AS1Q96PY0 264 aa13.82□□□□□ -0.2
USP48-204ENST00000400301 MAP6D1Q9H9H5 199 aa13.82□□□□□ -0.2
USP48-204ENST00000400301 M0QY20 66 aa13.82□□□□□ -0.2
USP48-204ENST00000400301 GAGE2BQ13066 116 aa13.82□□□□□ -0.2
USP48-204ENST00000400301 GAGE2EQ4V326 116 aa13.82□□□□□ -0.2
USP48-204ENST00000400301 GAGE2DQ9UEU5 116 aa13.82□□□□□ -0.2
USP48-204ENST00000400301 C4orf3Q8WVX3 66 aa13.81□□□□□ -0.2
USP48-204ENST00000400301 Q9H8V8 135 aa13.81□□□□□ -0.2
USP48-204ENST00000400301 TMEM86BQ8N661 226 aa13.81□□□□□ -0.2
USP48-204ENST00000400301 FRYLO94915 3013 aa13.8□□□□□ -0.2
USP48-204ENST00000400301 CKS1BP61024 79 aa13.8□□□□□ -0.2
USP48-204ENST00000400301 ANAPC13Q9BS18 74 aa13.79□□□□□ -0.2
USP48-204ENST00000400301 RBX1P62877 108 aa13.79□□□□□ -0.2
USP48-204ENST00000400301 ZFAND6Q6FIF0 208 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms