RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 NUPR1O60356 82 aa2.52□□□□□ -2.01
HMGB1-204ENST00000399489 IL4P05112 153 aa2.52□□□□□ -2.01
HMGB1-204ENST00000399489 PIRTP0C851 137 aa2.52□□□□□ -2.01
HMGB1-204ENST00000399489 ZNF345Q14585 488 aa2.52□□□□□ -2.01
HMGB1-204ENST00000399489 PMCHL1Q16048 86 aa2.52□□□□□ -2.01
HMGB1-204ENST00000399489 Q6P435 159 aa2.52□□□□□ -2.01
HMGB1-204ENST00000399489 LYPD6Q86Y78 171 aa2.52□□□□□ -2.01
HMGB1-204ENST00000399489 Q8NAQ8 132 aa2.52□□□□□ -2.01
HMGB1-204ENST00000399489 CYTL1Q9NRR1 136 aa2.52□□□□□ -2.01
HMGB1-204ENST00000399489 NHP2Q9NX24 153 aaKnown RBP2.52□□□□□ -2.01
HMGB1-204ENST00000399489 TIMM9Q9Y5J7 89 aa2.52□□□□□ -2.01
HMGB1-204ENST00000399489 KIF25-AS1Q9Y6Z4 181 aa2.52□□□□□ -2.01
HMGB1-204ENST00000399489 S4R3C0 116 aa2.52□□□□□ -2.01
HMGB1-204ENST00000399489 TRAV7A0A075B6U4 112 aa2.51□□□□□ -2.01
HMGB1-204ENST00000399489 IGHV3OR16-8A0A075B7F1 116 aa2.51□□□□□ -2.01
HMGB1-204ENST00000399489 TRAV14DV4A0A0A6YYC5 116 aa2.51□□□□□ -2.01
HMGB1-204ENST00000399489 MUC21A0A140T8X8 626 aa2.51□□□□□ -2.01
HMGB1-204ENST00000399489 KANTRA0A1W2PQU2 76 aa2.51□□□□□ -2.01
HMGB1-204ENST00000399489 SYS1-DBNDD2H3BUS1 97 aa2.51□□□□□ -2.01
HMGB1-204ENST00000399489 H3BUT2 72 aa2.51□□□□□ -2.01
HMGB1-204ENST00000399489 RBM3P98179 157 aaKnown RBP2.51□□□□□ -2.01
HMGB1-204ENST00000399489 WFDC2Q14508 124 aa2.51□□□□□ -2.01
HMGB1-204ENST00000399489 LYZL1Q6UWQ5 148 aa2.51□□□□□ -2.01
HMGB1-204ENST00000399489 COMMD6Q7Z4G1 85 aa2.51□□□□□ -2.01
HMGB1-204ENST00000399489 ZDBF2Q9HCK1 2354 aa2.51□□□□□ -2.01
HMGB1-204ENST00000399489 ASPMQ8IZT6 3477 aa2.51□□□□□ -2.01
HMGB1-204ENST00000399489 KIF26AQ9ULI4 1882 aaPredicted RBP2.51□□□□□ -2.01
HMGB1-204ENST00000399489 LOC107984156A0A0G2JMH3 177 aa2.51□□□□□ -2.01
HMGB1-204ENST00000399489 A0A1B0GU33 70 aa2.51□□□□□ -2.01
HMGB1-204ENST00000399489 HMSDA8MTL9 139 aa2.51□□□□□ -2.01
HMGB1-204ENST00000399489 CCKP06307 115 aa2.51□□□□□ -2.01
HMGB1-204ENST00000399489 DEFA4P12838 97 aa2.51□□□□□ -2.01
HMGB1-204ENST00000399489 ZNF22P17026 224 aaPredicted RBP2.51□□□□□ -2.01
HMGB1-204ENST00000399489 FXYD2P54710 66 aa2.51□□□□□ -2.01
HMGB1-204ENST00000399489 NDPQ00604 133 aa2.51□□□□□ -2.01
HMGB1-204ENST00000399489 S100A7L2Q5SY68 101 aa2.51□□□□□ -2.01
HMGB1-204ENST00000399489 ARL17AQ8IVW1 177 aa2.51□□□□□ -2.01
HMGB1-204ENST00000399489 SERP2Q8N6R1 65 aa2.51□□□□□ -2.01
HMGB1-204ENST00000399489 Q96M85 177 aa2.51□□□□□ -2.01
HMGB1-204ENST00000399489 SMIM7Q9BQ49 75 aa2.51□□□□□ -2.01
HMGB1-204ENST00000399489 CACNA1GO43497 2377 aa2.5□□□□□ -2.01
HMGB1-204ENST00000399489 EPG5Q9HCE0 2579 aa2.5□□□□□ -2.01
HMGB1-204ENST00000399489 DDX60LQ5H9U9 1706 aaKnown RBP2.5□□□□□ -2.01
HMGB1-204ENST00000399489 HELZP42694 1942 aaKnown RBP2.5□□□□□ -2.01
HMGB1-204ENST00000399489 CHD8Q9HCK8 2581 aa2.5□□□□□ -2.01
HMGB1-204ENST00000399489 VPS13AQ96RL7 3174 aa2.5□□□□□ -2.01
HMGB1-204ENST00000399489 C11orf86A6NJI1 115 aa2.5□□□□□ -2.01
HMGB1-204ENST00000399489 GNRH2O43555 120 aa2.5□□□□□ -2.01
HMGB1-204ENST00000399489 NMSQ5H8A3 153 aa2.5□□□□□ -2.01
HMGB1-204ENST00000399489 SPANXN1Q5VSR9 72 aa2.5□□□□□ -2.01
HMGB1-204ENST00000399489 C18orf32Q8TCD1 76 aa2.5□□□□□ -2.01
HMGB1-204ENST00000399489 TRGV9Q99603 122 aa2.5□□□□□ -2.01
HMGB1-204ENST00000399489 SLC50A1Q9BRV3 221 aa2.5□□□□□ -2.01
HMGB1-204ENST00000399489 CXCL16Q9H2A7 254 aa2.5□□□□□ -2.01
HMGB1-204ENST00000399489 MYH4Q9Y623 1939 aa2.5□□□□□ -2.01
HMGB1-204ENST00000399489 PKD1L2Q7Z442 2459 aa2.49□□□□□ -2.01
HMGB1-204ENST00000399489 CACNA1HO95180 2353 aa2.49□□□□□ -2.01
HMGB1-204ENST00000399489 MYH8P13535 1937 aa2.49□□□□□ -2.01
HMGB1-204ENST00000399489 MYLKQ15746 1914 aa2.49□□□□□ -2.01
HMGB1-204ENST00000399489 TRAV2A0A0B4J234 112 aa2.49□□□□□ -2.01
HMGB1-204ENST00000399489 TRAV17A0A0B4J275 112 aa2.49□□□□□ -2.01
HMGB1-204ENST00000399489 TRBV10-2A0A0K0K1G8 114 aa2.49□□□□□ -2.01
HMGB1-204ENST00000399489 hDV103S1A0JD37 113 aa2.49□□□□□ -2.01
HMGB1-204ENST00000399489 NAP1L6A6NFF2 107 aa2.49□□□□□ -2.01
HMGB1-204ENST00000399489 IBA57-AS1B1ANH7 110 aa2.49□□□□□ -2.01
HMGB1-204ENST00000399489 C17orf112F2Z3M2 114 aa2.49□□□□□ -2.01
HMGB1-204ENST00000399489 H7C2G1 150 aa2.49□□□□□ -2.01
HMGB1-204ENST00000399489 GNG11P61952 73 aa2.49□□□□□ -2.01
HMGB1-204ENST00000399489 EIF4EBP1Q13541 118 aaPredicted RBP2.49□□□□□ -2.01
HMGB1-204ENST00000399489 RHOHQ15669 191 aa2.49□□□□□ -2.01
HMGB1-204ENST00000399489 MUCL1Q96DR8 90 aa2.49□□□□□ -2.01
HMGB1-204ENST00000399489 NXT2Q9NPJ8 142 aaKnown RBP2.49□□□□□ -2.01
HMGB1-204ENST00000399489 MINOS1-NBL1R4GNA1 71 aa2.49□□□□□ -2.01
HMGB1-204ENST00000399489 LTBP2Q14767 1821 aa2.49□□□□□ -2.01
HMGB1-204ENST00000399489 CACNA1BQ00975 2339 aa2.49□□□□□ -2.01
HMGB1-204ENST00000399489 ANK1P16157 1881 aa2.49□□□□□ -2.01
HMGB1-204ENST00000399489 ANAPC1Q9H1A4 1944 aa2.49□□□□□ -2.01
HMGB1-204ENST00000399489 MCM3APO60318 1980 aa2.49□□□□□ -2.01
HMGB1-204ENST00000399489 CRYM-AS1A6NIL9 109 aa2.48□□□□□ -2.01
HMGB1-204ENST00000399489 CCL16O15467 120 aa2.48□□□□□ -2.01
HMGB1-204ENST00000399489 CPSF4O95639 269 aaKnown RBP2.48□□□□□ -2.01
HMGB1-204ENST00000399489 IGKV3-15P01624 115 aa2.48□□□□□ -2.01
HMGB1-204ENST00000399489 CLPSP04118 112 aa2.48□□□□□ -2.01
HMGB1-204ENST00000399489 SFTA3P0C7M3 94 aa2.48□□□□□ -2.01
HMGB1-204ENST00000399489 RNASE2P10153 161 aaKnown RBP2.48□□□□□ -2.01
HMGB1-204ENST00000399489 Q1T7F1 81 aa2.48□□□□□ -2.01
HMGB1-204ENST00000399489 ESRGQ1W209 222 aa2.48□□□□□ -2.01
HMGB1-204ENST00000399489 KRTAP25-1Q3LHN0 102 aa2.48□□□□□ -2.01
HMGB1-204ENST00000399489 KPRPQ5T749 579 aaPredicted RBP2.48□□□□□ -2.01
HMGB1-204ENST00000399489 Q8IYB0 196 aa2.48□□□□□ -2.01
HMGB1-204ENST00000399489 Q8N814 137 aa2.48□□□□□ -2.01
HMGB1-204ENST00000399489 OR8B3Q8NGG8 313 aa2.48□□□□□ -2.01
HMGB1-204ENST00000399489 DYNLRB2Q8TF09 96 aa2.48□□□□□ -2.01
HMGB1-204ENST00000399489 OR8B2Q96RD0 313 aa2.48□□□□□ -2.01
HMGB1-204ENST00000399489 MRPL35Q9NZE8 188 aaKnown RBP2.48□□□□□ -2.01
HMGB1-204ENST00000399489 TRIOO75962 3097 aa2.48□□□□□ -2.01
HMGB1-204ENST00000399489 PTPRZ1P23471 2315 aaPredicted RBP2.48□□□□□ -2.01
HMGB1-204ENST00000399489 IGLV3-12A0A075B6K2 115 aa2.48□□□□□ -2.01
HMGB1-204ENST00000399489 IGKV2D-26A0A0A0MRZ7 120 aa2.48□□□□□ -2.01
HMGB1-204ENST00000399489 NDUFC1O43677 76 aa2.48□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 111.3 ms