RNA–Protein interactions for RNA: ENST00000395969.6

VPS41-203, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5 BASIC

Gene VPS41, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-203ENST00000395969 LAGE3Q14657 143 aa4.01□□□□□ -1.77
VPS41-203ENST00000395969 TMEM78Q5T7P6 136 aa4.01□□□□□ -1.77
VPS41-203ENST00000395969 SCGB1D4Q6XE38 83 aa4.01□□□□□ -1.77
VPS41-203ENST00000395969 NDUFA11Q86Y39 141 aa4.01□□□□□ -1.77
VPS41-203ENST00000395969 DCANP1Q8TF63 244 aa4.01□□□□□ -1.77
VPS41-203ENST00000395969 MDFICQ9P1T7 246 aa4.01□□□□□ -1.77
VPS41-203ENST00000395969 LAMA5O15230 3695 aa4□□□□□ -1.77
VPS41-203ENST00000395969 H3BUX3 64 aa4□□□□□ -1.77
VPS41-203ENST00000395969 ZNF80P51504 273 aaPredicted RBP4□□□□□ -1.77
VPS41-203ENST00000395969 HES1Q14469 280 aa4□□□□□ -1.77
VPS41-203ENST00000395969 NRACQ8N912 160 aa4□□□□□ -1.77
VPS41-203ENST00000395969 DAZ1Q9NQZ3 744 aaKnown RBP4□□□□□ -1.77
VPS41-203ENST00000395969 ABCA4P78363 2273 aa4□□□□□ -1.77
VPS41-203ENST00000395969 C9JAW5 83 aa4□□□□□ -1.77
VPS41-203ENST00000395969 GATA1P15976 413 aaPredicted RBP4□□□□□ -1.77
VPS41-203ENST00000395969 RASL10AQ92737 203 aa4□□□□□ -1.77
VPS41-203ENST00000395969 ACACAQ13085 2346 aa4□□□□□ -1.77
VPS41-203ENST00000395969 NBASA2RRP1 2371 aa4□□□□□ -1.77
VPS41-203ENST00000395969 NEXN-AS1Q8NBZ9 246 aa4□□□□□ -1.77
VPS41-203ENST00000395969 TLN1Q9Y490 2541 aaKnown RBP3.99□□□□□ -1.77
VPS41-203ENST00000395969 NACAE9PAV3 2078 aa3.99□□□□□ -1.77
VPS41-203ENST00000395969 TRPT1Q86TN4 253 aaKnown RBP3.99□□□□□ -1.77
VPS41-203ENST00000395969 C10orf126Q8N4M7 172 aa3.99□□□□□ -1.77
VPS41-203ENST00000395969 C15orf53Q8NAA6 179 aa3.99□□□□□ -1.77
VPS41-203ENST00000395969 PLEKHB2Q96CS7 222 aa3.99□□□□□ -1.77
VPS41-203ENST00000395969 G3V318 75 aa3.99□□□□□ -1.77
VPS41-203ENST00000395969 K7EQG2 157 aa3.99□□□□□ -1.77
VPS41-203ENST00000395969 M0R381 172 aa3.99□□□□□ -1.77
VPS41-203ENST00000395969 SLC25A20O43772 301 aa3.99□□□□□ -1.77
VPS41-203ENST00000395969 TRGV3P03979 118 aa3.99□□□□□ -1.77
VPS41-203ENST00000395969 CFC1BP0CG36 223 aa3.99□□□□□ -1.77
VPS41-203ENST00000395969 CFC1P0CG37 223 aa3.99□□□□□ -1.77
VPS41-203ENST00000395969 CMC4P56277 68 aaPredicted RBP3.99□□□□□ -1.77
VPS41-203ENST00000395969 KRTAP10-9P60411 292 aa3.99□□□□□ -1.77
VPS41-203ENST00000395969 TOMM6Q96B49 74 aa3.99□□□□□ -1.77
VPS41-203ENST00000395969 PRADC1Q9BSG0 188 aa3.99□□□□□ -1.77
VPS41-203ENST00000395969 ZNF256Q9Y2P7 627 aaPredicted RBP3.99□□□□□ -1.77
VPS41-203ENST00000395969 PRB1P04280 392 aa3.98□□□□□ -1.77
VPS41-203ENST00000395969 RPL13AP40429 203 aaKnown RBP3.98□□□□□ -1.77
VPS41-203ENST00000395969 ZNF56Q15929 161 aa3.98□□□□□ -1.77
VPS41-203ENST00000395969 C5orf47Q569G3 176 aa3.98□□□□□ -1.77
VPS41-203ENST00000395969 ZFAND2AQ8N6M9 145 aa3.98□□□□□ -1.77
VPS41-203ENST00000395969 NTN5Q8WTR8 489 aaPredicted RBP3.98□□□□□ -1.77
VPS41-203ENST00000395969 TMEM126AQ9H061 195 aa3.98□□□□□ -1.77
VPS41-203ENST00000395969 PIEZO1Q92508 2521 aa3.98□□□□□ -1.77
VPS41-203ENST00000395969 USP24Q9UPU5 2620 aa3.98□□□□□ -1.77
VPS41-203ENST00000395969 IGKV2-40A0A087WW87 121 aaPredicted RBP3.98□□□□□ -1.77
VPS41-203ENST00000395969 A0A0J9YY99 117 aa3.98□□□□□ -1.77
VPS41-203ENST00000395969 ZNF815PA8K554 130 aa3.98□□□□□ -1.77
VPS41-203ENST00000395969 IGKV2D-40P01614 121 aaPredicted RBP3.98□□□□□ -1.77
VPS41-203ENST00000395969 IGHV3-30P01768 117 aa3.98□□□□□ -1.77
VPS41-203ENST00000395969 IGHV3-30-5P0DP03 117 aa3.98□□□□□ -1.77
VPS41-203ENST00000395969 Q1RN00 199 aa3.98□□□□□ -1.77
VPS41-203ENST00000395969 FAM19A5Q7Z5A7 132 aaPredicted RBP3.98□□□□□ -1.77
VPS41-203ENST00000395969 OR10J6PQ8NGY7 276 aa3.98□□□□□ -1.77
VPS41-203ENST00000395969 IGSF10Q6WRI0 2623 aa3.98□□□□□ -1.77
VPS41-203ENST00000395969 ADGRG4Q8IZF6 3080 aa3.98□□□□□ -1.77
VPS41-203ENST00000395969 TEX49A0A1B0GTD5 131 aa3.98□□□□□ -1.77
VPS41-203ENST00000395969 HILS1P60008 231 aa3.98□□□□□ -1.77
VPS41-203ENST00000395969 ERCC8Q13216 396 aa3.98□□□□□ -1.77
VPS41-203ENST00000395969 DCHS2Q6V1P9 2916 aa3.98□□□□□ -1.77
VPS41-203ENST00000395969 PKD1L2Q7Z442 2459 aa3.97□□□□□ -1.77
VPS41-203ENST00000395969 SMIM9A6NGZ8 99 aa3.97□□□□□ -1.77
VPS41-203ENST00000395969 IGHV4-59P01825 116 aa3.97□□□□□ -1.77
VPS41-203ENST00000395969 P0DMU3 169 aa3.97□□□□□ -1.77
VPS41-203ENST00000395969 FAM231AP0DMU4 169 aa3.97□□□□□ -1.77
VPS41-203ENST00000395969 FAM231CP0DMU5 169 aa3.97□□□□□ -1.77
VPS41-203ENST00000395969 HLA-DMBP28068 263 aa3.97□□□□□ -1.77
VPS41-203ENST00000395969 C9orf153Q5TBE3 101 aa3.97□□□□□ -1.77
VPS41-203ENST00000395969 CLEC19AQ6UXS0 136 aa3.97□□□□□ -1.77
VPS41-203ENST00000395969 KLHL30-AS1Q8NEE0 82 aa3.97□□□□□ -1.77
VPS41-203ENST00000395969 IL17DQ8TAD2 202 aa3.97□□□□□ -1.77
VPS41-203ENST00000395969 Q96MF0 132 aa3.97□□□□□ -1.77
VPS41-203ENST00000395969 LINC01587Q99440 93 aa3.97□□□□□ -1.77
VPS41-203ENST00000395969 RIF1Q5UIP0 2472 aaKnown RBP3.97□□□□□ -1.77
VPS41-203ENST00000395969 LINC01620Q4KN68 170 aa3.97□□□□□ -1.77
VPS41-203ENST00000395969 BAALCQ8WXS3 180 aa3.97□□□□□ -1.77
VPS41-203ENST00000395969 PRO1854Q9UHT4 67 aa3.97□□□□□ -1.77
VPS41-203ENST00000395969 IGHV4OR15-8A0A075B7B6 117 aa3.96□□□□□ -1.77
VPS41-203ENST00000395969 A0A087WW49 117 aa3.96□□□□□ -1.77
VPS41-203ENST00000395969 BLCAPP62952 87 aa3.96□□□□□ -1.77
VPS41-203ENST00000395969 ZNF415Q09FC8 603 aa3.96□□□□□ -1.77
VPS41-203ENST00000395969 ORMDL2Q53FV1 153 aa3.96□□□□□ -1.77
VPS41-203ENST00000395969 BRD3OSQ6XYD6 125 aa3.96□□□□□ -1.77
VPS41-203ENST00000395969 SLC25A29Q8N8R3 303 aa3.96□□□□□ -1.77
VPS41-203ENST00000395969 Q8TAT8 98 aa3.96□□□□□ -1.77
VPS41-203ENST00000395969 C9orf85Q96MD7 179 aa3.96□□□□□ -1.77
VPS41-203ENST00000395969 SMIM2Q9BVW6 85 aa3.96□□□□□ -1.77
VPS41-203ENST00000395969 AGPAT4-IT1Q9H0P7 198 aa3.96□□□□□ -1.77
VPS41-203ENST00000395969 RETNQ9HD89 108 aa3.96□□□□□ -1.77
VPS41-203ENST00000395969 ANK3Q12955 4377 aaKnown RBP3.96□□□□□ -1.78
VPS41-203ENST00000395969 ZZEF1O43149 2961 aa3.96□□□□□ -1.78
VPS41-203ENST00000395969 EIF4EBP3O60516 100 aaPredicted RBP3.96□□□□□ -1.78
VPS41-203ENST00000395969 ORM1P02763 201 aa3.96□□□□□ -1.78
VPS41-203ENST00000395969 SPTAN1Q13813 2472 aaKnown RBP3.96□□□□□ -1.78
VPS41-203ENST00000395969 ECSCRQ19T08 205 aa3.96□□□□□ -1.78
VPS41-203ENST00000395969 HRCT1Q6UXD1 115 aa3.96□□□□□ -1.78
VPS41-203ENST00000395969 UNQ9165/PRO28630Q6UXU0 137 aa3.96□□□□□ -1.78
VPS41-203ENST00000395969 DUX3Q96PT4 197 aa3.96□□□□□ -1.78
VPS41-203ENST00000395969 FBN2P35556 2912 aa3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 152.9 ms