RNA–Protein interactions for RNA: ENST00000378676.1

SHROOM1-202, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 2,352 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-202ENST00000378676 ELANEP08246 267 aa14.39□□□□□ -0.11
SHROOM1-202ENST00000378676 TSPEAR-AS2P59090 65 aa14.39□□□□□ -0.11
SHROOM1-202ENST00000378676 WFDC2Q14508 124 aa14.39□□□□□ -0.11
SHROOM1-202ENST00000378676 SCGB1D4Q6XE38 83 aa14.39□□□□□ -0.11
SHROOM1-202ENST00000378676 Q6YL49 198 aa14.39□□□□□ -0.11
SHROOM1-202ENST00000378676 ZNRF2Q8NHG8 242 aa14.39□□□□□ -0.11
SHROOM1-202ENST00000378676 BEX4Q9NWD9 120 aaPredicted RBP14.39□□□□□ -0.11
SHROOM1-202ENST00000378676 LINC01549A6NIU2 74 aa14.39□□□□□ -0.11
SHROOM1-202ENST00000378676 DEFB136Q30KP8 78 aa14.39□□□□□ -0.11
SHROOM1-202ENST00000378676 OPRPNQ99935 248 aaPredicted RBP14.39□□□□□ -0.11
SHROOM1-202ENST00000378676 NACAE9PAV3 2078 aa14.38□□□□□ -0.11
SHROOM1-202ENST00000378676 HOXA3O43365 443 aaPredicted RBP14.38□□□□□ -0.11
SHROOM1-202ENST00000378676 CKS1BP61024 79 aa14.38□□□□□ -0.11
SHROOM1-202ENST00000378676 UBE2E2Q96LR5 201 aa14.38□□□□□ -0.11
SHROOM1-202ENST00000378676 SPAG8Q99932 426 aaPredicted RBP14.38□□□□□ -0.11
SHROOM1-202ENST00000378676 CHD6Q8TD26 2715 aa14.38□□□□□ -0.11
SHROOM1-202ENST00000378676 KNCNA6PVL3 124 aa14.38□□□□□ -0.11
SHROOM1-202ENST00000378676 SLURP1P55000 103 aa14.38□□□□□ -0.11
SHROOM1-202ENST00000378676 ZNF876PQ49A33 203 aa14.38□□□□□ -0.11
SHROOM1-202ENST00000378676 IGHV4-31P0DP07 118 aa14.37□□□□□ -0.11
SHROOM1-202ENST00000378676 NSUN5P1Q3KNT7 163 aa14.37□□□□□ -0.11
SHROOM1-202ENST00000378676 PAPPA-AS1Q5QFB9 102 aa14.37□□□□□ -0.11
SHROOM1-202ENST00000378676 P0DMU3 169 aa14.37□□□□□ -0.11
SHROOM1-202ENST00000378676 FAM231AP0DMU4 169 aa14.37□□□□□ -0.11
SHROOM1-202ENST00000378676 FAM231CP0DMU5 169 aa14.37□□□□□ -0.11
SHROOM1-202ENST00000378676 TRPT1Q86TN4 253 aaKnown RBP14.37□□□□□ -0.11
SHROOM1-202ENST00000378676 H3BMG7 143 aa14.36□□□□□ -0.11
SHROOM1-202ENST00000378676 HERVK_113P61574 105 aa14.36□□□□□ -0.11
SHROOM1-202ENST00000378676 TMEM170BQ5T4T1 132 aa14.36□□□□□ -0.11
SHROOM1-202ENST00000378676 A0A0J9YY99 117 aa14.34□□□□□ -0.11
SHROOM1-202ENST00000378676 RHOHQ15669 191 aa14.34□□□□□ -0.11
SHROOM1-202ENST00000378676 RNF152Q8N8N0 203 aa14.34□□□□□ -0.11
SHROOM1-202ENST00000378676 TRGV11A0A075B6L2 103 aa14.34□□□□□ -0.11
SHROOM1-202ENST00000378676 KRTAP10-9P60411 292 aa14.34□□□□□ -0.11
SHROOM1-202ENST00000378676 MTURNQ8N3F0 131 aa14.34□□□□□ -0.11
SHROOM1-202ENST00000378676 PRRC2AP48634 2157 aaKnown RBP14.34□□□□□ -0.11
SHROOM1-202ENST00000378676 TEX15Q9BXT5 2789 aa14.34□□□□□ -0.11
SHROOM1-202ENST00000378676 RBMY1BA6NDE4 496 aaKnown RBP14.33□□□□□ -0.11
SHROOM1-202ENST00000378676 RBMY1EA6NEQ0 496 aaKnown RBP14.33□□□□□ -0.11
SHROOM1-202ENST00000378676 RBMY1DP0C7P1 496 aaKnown RBP14.33□□□□□ -0.11
SHROOM1-202ENST00000378676 SRSF9Q13242 221 aaKnown RBP eCLIP14.33□□□□□ -0.11
SHROOM1-202ENST00000378676 ETDBQ3ZM63 59 aa14.33□□□□□ -0.11
SHROOM1-202ENST00000378676 PGPEP1Q9NXJ5 209 aa14.33□□□□□ -0.11
SHROOM1-202ENST00000378676 PRM2P04554 102 aa14.33□□□□□ -0.12
SHROOM1-202ENST00000378676 UBE2D1P51668 147 aa14.33□□□□□ -0.12
SHROOM1-202ENST00000378676 DEFB131AP59861 70 aa14.33□□□□□ -0.12
SHROOM1-202ENST00000378676 PTPN13Q12923 2485 aa14.33□□□□□ -0.12
SHROOM1-202ENST00000378676 GAGE13Q4V321 117 aa14.33□□□□□ -0.12
SHROOM1-202ENST00000378676 HTN1P15515 57 aa14.32□□□□□ -0.12
SHROOM1-202ENST00000378676 Q5PR19 223 aa14.32□□□□□ -0.12
SHROOM1-202ENST00000378676 SH2D6Q7Z4S9 175 aa14.32□□□□□ -0.12
SHROOM1-202ENST00000378676 AMELXQ99217 191 aa14.32□□□□□ -0.12
SHROOM1-202ENST00000378676 PRO0461Q9UI25 63 aa14.32□□□□□ -0.12
SHROOM1-202ENST00000378676 CREBBPQ92793 2442 aa14.32□□□□□ -0.12
SHROOM1-202ENST00000378676 IGHV3-73A0A0B4J1V6 119 aa14.32□□□□□ -0.12
SHROOM1-202ENST00000378676 C20orf203Q8NBC4 194 aa14.32□□□□□ -0.12
SHROOM1-202ENST00000378676 DUX3Q96PT4 197 aa14.32□□□□□ -0.12
SHROOM1-202ENST00000378676 ABCA12Q86UK0 2595 aa14.31□□□□□ -0.12
SHROOM1-202ENST00000378676 HIST2H2BDQ6DRA6 164 aa14.31□□□□□ -0.12
SHROOM1-202ENST00000378676 I3L3M4 83 aa14.31□□□□□ -0.12
SHROOM1-202ENST00000378676 PROK1P58294 105 aa14.31□□□□□ -0.12
SHROOM1-202ENST00000378676 NFE4Q86UQ8 179 aa14.31□□□□□ -0.12
SHROOM1-202ENST00000378676 MRPL16Q9NX20 251 aaKnown RBP14.3□□□□□ -0.12
SHROOM1-202ENST00000378676 A6NJY4 79 aa14.3□□□□□ -0.12
SHROOM1-202ENST00000378676 TRAV26-1A0A087WT03 109 aa14.29□□□□□ -0.12
SHROOM1-202ENST00000378676 J3QQQ9 107 aa14.29□□□□□ -0.12
SHROOM1-202ENST00000378676 TSPAN13O95857 204 aa14.29□□□□□ -0.12
SHROOM1-202ENST00000378676 IGLV4-3A0A075B6K6 122 aa14.28□□□□□ -0.12
SHROOM1-202ENST00000378676 A8MTW9 85 aa14.28□□□□□ -0.12
SHROOM1-202ENST00000378676 H3BMM0 161 aa14.28□□□□□ -0.12
SHROOM1-202ENST00000378676 APOMO95445 188 aa14.28□□□□□ -0.12
SHROOM1-202ENST00000378676 TMEM61Q8N0U2 210 aa14.28□□□□□ -0.12
SHROOM1-202ENST00000378676 ATP6V0E2Q8NHE4 81 aa14.28□□□□□ -0.12
SHROOM1-202ENST00000378676 TMEM223A0PJW6 202 aa14.27□□□□□ -0.12
SHROOM1-202ENST00000378676 CRYBA4P53673 196 aa14.27□□□□□ -0.12
SHROOM1-202ENST00000378676 IGHV3-30P01768 117 aa14.27□□□□□ -0.13
SHROOM1-202ENST00000378676 IGHV3-30-5P0DP03 117 aa14.27□□□□□ -0.13
SHROOM1-202ENST00000378676 ZNF22P17026 224 aaPredicted RBP14.27□□□□□ -0.13
SHROOM1-202ENST00000378676 SFTA2Q6UW10 78 aa14.27□□□□□ -0.13
SHROOM1-202ENST00000378676 GEMIN7Q9H840 131 aaKnown RBP14.27□□□□□ -0.13
SHROOM1-202ENST00000378676 MYO9AB2RTY4 2548 aa14.27□□□□□ -0.13
SHROOM1-202ENST00000378676 SLC25A29Q8N8R3 303 aa14.26□□□□□ -0.13
SHROOM1-202ENST00000378676 IGHV3-64A0A075B6Q5 118 aa14.26□□□□□ -0.13
SHROOM1-202ENST00000378676 A0A0J9YXV3 536 aa14.26□□□□□ -0.13
SHROOM1-202ENST00000378676 PLA2G2AP14555 144 aa14.26□□□□□ -0.13
SHROOM1-202ENST00000378676 LGALS3P17931 250 aaKnown RBP14.26□□□□□ -0.13
SHROOM1-202ENST00000378676 Q9UF83 564 aa14.26□□□□□ -0.13
SHROOM1-202ENST00000378676 Q8N2B8 174 aa14.25□□□□□ -0.13
SHROOM1-202ENST00000378676 ZNF418Q8TF45 676 aaPredicted RBP14.25□□□□□ -0.13
SHROOM1-202ENST00000378676 AKAP9Q99996 3911 aa14.25□□□□□ -0.13
SHROOM1-202ENST00000378676 NAV2Q8IVL1 2488 aa14.25□□□□□ -0.13
SHROOM1-202ENST00000378676 NDUFA11Q86Y39 141 aa14.25□□□□□ -0.13
SHROOM1-202ENST00000378676 FAM104AQ969W3 186 aa14.25□□□□□ -0.13
SHROOM1-202ENST00000378676 EDA2RQ9HAV5 297 aa14.25□□□□□ -0.13
SHROOM1-202ENST00000378676 J3QKU1 62 aa14.24□□□□□ -0.13
SHROOM1-202ENST00000378676 RHODO00212 210 aa14.24□□□□□ -0.13
SHROOM1-202ENST00000378676 LEPROTO15243 131 aa14.24□□□□□ -0.13
SHROOM1-202ENST00000378676 INSL3P51460 131 aa14.24□□□□□ -0.13
SHROOM1-202ENST00000378676 KHDC1LQ5JSQ8 128 aa14.24□□□□□ -0.13
SHROOM1-202ENST00000378676 MAP6D1Q9H9H5 199 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms