RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 TRAV8-3A0A0A6YYJ7 113 aa11.83□□□□□ -0.52
CKAP4-201ENST00000378026 TRBV10-2A0A0K0K1G8 114 aa11.83□□□□□ -0.52
CKAP4-201ENST00000378026 EDN2P20800 178 aa11.83□□□□□ -0.52
CKAP4-201ENST00000378026 CDSNQ15517 529 aa11.83□□□□□ -0.52
CKAP4-201ENST00000378026 TRAV41A0A0B4J266 112 aa11.83□□□□□ -0.52
CKAP4-201ENST00000378026 A0A0J9YXY3 114 aa11.83□□□□□ -0.52
CKAP4-201ENST00000378026 UBE2E1P51965 193 aa11.83□□□□□ -0.52
CKAP4-201ENST00000378026 CUBNO60494 3623 aa11.83□□□□□ -0.52
CKAP4-201ENST00000378026 TRAV12-2A0A075B6T6 113 aa11.83□□□□□ -0.52
CKAP4-201ENST00000378026 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.83□□□□□ -0.52
CKAP4-201ENST00000378026 SOCS3O14543 225 aa11.83□□□□□ -0.52
CKAP4-201ENST00000378026 A8MZ25 164 aa11.82□□□□□ -0.52
CKAP4-201ENST00000378026 MEIG1Q5JSS6 88 aa11.82□□□□□ -0.52
CKAP4-201ENST00000378026 CHCHD5Q9BSY4 110 aa11.82□□□□□ -0.52
CKAP4-201ENST00000378026 SIRPDQ9H106 197 aa11.82□□□□□ -0.52
CKAP4-201ENST00000378026 PRRC2AP48634 2157 aaKnown RBP11.82□□□□□ -0.52
CKAP4-201ENST00000378026 MED14OSP0DP75 135 aa11.82□□□□□ -0.52
CKAP4-201ENST00000378026 FOXC1Q12948 553 aa11.82□□□□□ -0.52
CKAP4-201ENST00000378026 UBTD1Q9HAC8 227 aa11.82□□□□□ -0.52
CKAP4-201ENST00000378026 MDFICQ9P1T7 246 aa11.82□□□□□ -0.52
CKAP4-201ENST00000378026 CEMP1Q6PRD7 247 aaPredicted RBP11.81□□□□□ -0.52
CKAP4-201ENST00000378026 TRBV27A0A0K0K1C4 114 aa11.81□□□□□ -0.52
CKAP4-201ENST00000378026 CCL21O00585 134 aa11.81□□□□□ -0.52
CKAP4-201ENST00000378026 H7C423 109 aa11.8□□□□□ -0.52
CKAP4-201ENST00000378026 M0R2P5 195 aa11.8□□□□□ -0.52
CKAP4-201ENST00000378026 LGALS9O00182 355 aa11.8□□□□□ -0.52
CKAP4-201ENST00000378026 C5orf56Q8N8D9 126 aa11.8□□□□□ -0.52
CKAP4-201ENST00000378026 RHPN1-AS1Q9BWJ2 59 aa11.8□□□□□ -0.52
CKAP4-201ENST00000378026 ADAMTSL4-AS1Q5T5F5 129 aa11.8□□□□□ -0.52
CKAP4-201ENST00000378026 IGHV3-30-3P0DP02 117 aa11.8□□□□□ -0.52
CKAP4-201ENST00000378026 POM121L12Q8N7R1 296 aa11.8□□□□□ -0.52
CKAP4-201ENST00000378026 KLK9Q9UKQ9 250 aa11.8□□□□□ -0.52
CKAP4-201ENST00000378026 ICOSQ9Y6W8 199 aa11.8□□□□□ -0.52
CKAP4-201ENST00000378026 IGHV3-73A0A0B4J1V6 119 aa11.79□□□□□ -0.52
CKAP4-201ENST00000378026 IGF2-ASQ6U949 168 aa11.79□□□□□ -0.52
CKAP4-201ENST00000378026 FAM19A4Q96LR4 140 aa11.79□□□□□ -0.52
CKAP4-201ENST00000378026 DAND5Q8N907 189 aa11.78□□□□□ -0.52
CKAP4-201ENST00000378026 TRBV30A0A0K0K1B3 111 aa11.78□□□□□ -0.52
CKAP4-201ENST00000378026 NXPH4O95158 308 aa11.78□□□□□ -0.52
CKAP4-201ENST00000378026 LY6EQ16553 131 aa11.78□□□□□ -0.52
CKAP4-201ENST00000378026 TIMM21Q9BVV7 248 aa11.78□□□□□ -0.52
CKAP4-201ENST00000378026 CREBBPQ92793 2442 aa11.78□□□□□ -0.52
CKAP4-201ENST00000378026 M0QXV9 152 aa11.78□□□□□ -0.52
CKAP4-201ENST00000378026 M0QY20 66 aa11.78□□□□□ -0.52
CKAP4-201ENST00000378026 HTN1P15515 57 aa11.78□□□□□ -0.52
CKAP4-201ENST00000378026 RPL13AP40429 203 aaKnown RBP11.78□□□□□ -0.52
CKAP4-201ENST00000378026 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.77□□□□□ -0.52
CKAP4-201ENST00000378026 IGLV4-3A0A075B6K6 122 aa11.77□□□□□ -0.53
CKAP4-201ENST00000378026 PF4V1P10720 104 aa11.77□□□□□ -0.53
CKAP4-201ENST00000378026 BRD3OSQ6XYD6 125 aa11.77□□□□□ -0.53
CKAP4-201ENST00000378026 C20orf203Q8NBC4 194 aa11.77□□□□□ -0.53
CKAP4-201ENST00000378026 NDUFA4O00483 81 aa11.76□□□□□ -0.53
CKAP4-201ENST00000378026 VPS13CQ709C8 3753 aa11.76□□□□□ -0.53
CKAP4-201ENST00000378026 COX6CP09669 75 aa11.76□□□□□ -0.53
CKAP4-201ENST00000378026 CD28P10747 220 aa11.76□□□□□ -0.53
CKAP4-201ENST00000378026 Q6Q795 121 aa11.76□□□□□ -0.53
CKAP4-201ENST00000378026 IGHV1-69P01742 117 aa11.75□□□□□ -0.53
CKAP4-201ENST00000378026 NPFFO15130 113 aa11.75□□□□□ -0.53
CKAP4-201ENST00000378026 FAM223BA6NKX1 122 aa11.75□□□□□ -0.53
CKAP4-201ENST00000378026 KLLNB2CW77 178 aa11.75□□□□□ -0.53
CKAP4-201ENST00000378026 FAM223AQ8IWN6 122 aa11.75□□□□□ -0.53
CKAP4-201ENST00000378026 FAM110AQ9BQ89 295 aa11.75□□□□□ -0.53
CKAP4-201ENST00000378026 NDUFA12Q9UI09 145 aa11.75□□□□□ -0.53
CKAP4-201ENST00000378026 APRG1Q8IVJ8 170 aa11.74□□□□□ -0.53
CKAP4-201ENST00000378026 LITAFQ99732 161 aa11.74□□□□□ -0.53
CKAP4-201ENST00000378026 A0A0U1RRA0 63 aa11.74□□□□□ -0.53
CKAP4-201ENST00000378026 KLK9Q2XQG4 91 aa11.74□□□□□ -0.53
CKAP4-201ENST00000378026 IGF2RP11717 2491 aa11.74□□□□□ -0.53
CKAP4-201ENST00000378026 PTPRQQ9UMZ3 2332 aa11.74□□□□□ -0.53
CKAP4-201ENST00000378026 TRBV6-5A0A0K0K1A5 114 aa11.73□□□□□ -0.53
CKAP4-201ENST00000378026 NSUN5P1Q3KNT7 163 aa11.73□□□□□ -0.53
CKAP4-201ENST00000378026 CFAP161Q6P656 301 aa11.73□□□□□ -0.53
CKAP4-201ENST00000378026 I3L3M4 83 aa11.73□□□□□ -0.53
CKAP4-201ENST00000378026 C11orf71Q6IPW1 123 aa11.73□□□□□ -0.53
CKAP4-201ENST00000378026 TRGV11A0A075B6L2 103 aa11.73□□□□□ -0.53
CKAP4-201ENST00000378026 IGHV3-16A0A0C4DH30 117 aa11.72□□□□□ -0.53
CKAP4-201ENST00000378026 PROK1P58294 105 aa11.72□□□□□ -0.53
CKAP4-201ENST00000378026 RHOHQ15669 191 aa11.72□□□□□ -0.53
CKAP4-201ENST00000378026 SPINK13Q1W4C9 94 aa11.72□□□□□ -0.53
CKAP4-201ENST00000378026 MOB4Q9Y3A3 225 aa11.72□□□□□ -0.53
CKAP4-201ENST00000378026 DUX5Q96PT3 197 aa11.72□□□□□ -0.53
CKAP4-201ENST00000378026 BPESC1Q9GZL8 116 aa11.71□□□□□ -0.53
CKAP4-201ENST00000378026 FAM236AA0A1B0GUQ0 79 aa11.7□□□□□ -0.54
CKAP4-201ENST00000378026 FAM236BA0A1B0GV22 79 aa11.7□□□□□ -0.54
CKAP4-201ENST00000378026 A0A1W2PPR1 153 aa11.7□□□□□ -0.54
CKAP4-201ENST00000378026 DOPEY2Q9Y3R5 2298 aa11.7□□□□□ -0.54
CKAP4-201ENST00000378026 NACAE9PAV3 2078 aa11.7□□□□□ -0.54
CKAP4-201ENST00000378026 SPG11Q96JI7 2443 aa11.69□□□□□ -0.54
CKAP4-201ENST00000378026 KNCNA6PVL3 124 aa11.69□□□□□ -0.54
CKAP4-201ENST00000378026 H3BT86 120 aa11.69□□□□□ -0.54
CKAP4-201ENST00000378026 ZNF625Q96I27 306 aaPredicted RBP11.69□□□□□ -0.54
CKAP4-201ENST00000378026 Q9UF83 564 aa11.69□□□□□ -0.54
CKAP4-201ENST00000378026 A0A0J9YX75 114 aa11.69□□□□□ -0.54
CKAP4-201ENST00000378026 BLCAPP62952 87 aa11.69□□□□□ -0.54
CKAP4-201ENST00000378026 DAZ1Q9NQZ3 744 aaKnown RBP11.69□□□□□ -0.54
CKAP4-201ENST00000378026 LST1O00453 97 aa11.68□□□□□ -0.54
CKAP4-201ENST00000378026 PRM2P04554 102 aa11.68□□□□□ -0.54
CKAP4-201ENST00000378026 ID1P41134 155 aa11.68□□□□□ -0.54
CKAP4-201ENST00000378026 C9orf85Q96MD7 179 aa11.68□□□□□ -0.54
CKAP4-201ENST00000378026 IGHV1-58A0A0C4DH39 117 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms