RNA–Protein interactions for RNA: ENST00000376659.9

TRIM39-202, Transcript of tripartite motif containing 39, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM39, Length 3,535 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-202ENST00000376659 C2orf66Q6UXQ4 117 aa7.04□□□□□ -1.28
TRIM39-202ENST00000376659 Q8N1Y9 231 aa7.04□□□□□ -1.28
TRIM39-202ENST00000376659 MAPK1IP1LQ8NDC0 245 aa7.04□□□□□ -1.28
TRIM39-202ENST00000376659 IL17DQ8TAD2 202 aa7.04□□□□□ -1.28
TRIM39-202ENST00000376659 E9PLD3 99 aa7.04□□□□□ -1.28
TRIM39-202ENST00000376659 DUSP14O95147 198 aaKnown RBP7.04□□□□□ -1.28
TRIM39-202ENST00000376659 P0DMU3 169 aa7.04□□□□□ -1.28
TRIM39-202ENST00000376659 FAM231AP0DMU4 169 aa7.04□□□□□ -1.28
TRIM39-202ENST00000376659 FAM231CP0DMU5 169 aa7.04□□□□□ -1.28
TRIM39-202ENST00000376659 HOXD3P31249 432 aaPredicted RBP7.04□□□□□ -1.28
TRIM39-202ENST00000376659 ZFP2Q6ZN57 461 aa7.04□□□□□ -1.28
TRIM39-202ENST00000376659 DLX4Q92988 240 aaPredicted RBP7.04□□□□□ -1.28
TRIM39-202ENST00000376659 LINC00467Q9BRT7 94 aa7.04□□□□□ -1.28
TRIM39-202ENST00000376659 PHLDA3Q9Y5J5 127 aa7.04□□□□□ -1.28
TRIM39-202ENST00000376659 SETD2Q9BYW2 2564 aaPredicted RBP7.04□□□□□ -1.28
TRIM39-202ENST00000376659 CSPG4Q6UVK1 2322 aa7.04□□□□□ -1.28
TRIM39-202ENST00000376659 DNAH3Q8TD57 4116 aa7.04□□□□□ -1.28
TRIM39-202ENST00000376659 TRAV2A0A0B4J234 112 aa7.04□□□□□ -1.28
TRIM39-202ENST00000376659 SAMD5Q5TGI4 173 aa7.04□□□□□ -1.28
TRIM39-202ENST00000376659 PTH2Q96A98 100 aa7.04□□□□□ -1.28
TRIM39-202ENST00000376659 FAM208BQ5VWN6 2430 aa7.03□□□□□ -1.28
TRIM39-202ENST00000376659 TAL2Q16559 108 aa7.03□□□□□ -1.28
TRIM39-202ENST00000376659 SPANXB1Q9NS25 103 aaPredicted RBP7.03□□□□□ -1.28
TRIM39-202ENST00000376659 TRAV12-3A0A0B4J271 114 aa7.03□□□□□ -1.28
TRIM39-202ENST00000376659 TRAV25A0A0B4J276 109 aa7.03□□□□□ -1.28
TRIM39-202ENST00000376659 INSL3P51460 131 aa7.03□□□□□ -1.28
TRIM39-202ENST00000376659 TSPEAR-AS2P59090 65 aa7.03□□□□□ -1.28
TRIM39-202ENST00000376659 FOXI2Q6ZQN5 318 aa7.03□□□□□ -1.28
TRIM39-202ENST00000376659 GAGE12JA6NER3 117 aa7.02□□□□□ -1.28
TRIM39-202ENST00000376659 HOXA3O43365 443 aaPredicted RBP7.02□□□□□ -1.28
TRIM39-202ENST00000376659 GAGE7O76087 117 aa7.02□□□□□ -1.28
TRIM39-202ENST00000376659 GAGE12FP0CL80 117 aa7.02□□□□□ -1.28
TRIM39-202ENST00000376659 GAGE12GP0CL81 117 aa7.02□□□□□ -1.28
TRIM39-202ENST00000376659 GAGE12IP0CL82 117 aa7.02□□□□□ -1.28
TRIM39-202ENST00000376659 KRTAP1-1Q07627 177 aa7.02□□□□□ -1.28
TRIM39-202ENST00000376659 GAGE4Q13068 117 aa7.02□□□□□ -1.28
TRIM39-202ENST00000376659 SYT8Q8NBV8 401 aa7.02□□□□□ -1.28
TRIM39-202ENST00000376659 ZNRF2Q8NHG8 242 aa7.02□□□□□ -1.28
TRIM39-202ENST00000376659 TIMM17AQ99595 171 aa7.02□□□□□ -1.28
TRIM39-202ENST00000376659 SETXQ7Z333 2677 aaKnown RBP7.02□□□□□ -1.29
TRIM39-202ENST00000376659 TRAV12-2A0A075B6T6 113 aa7.02□□□□□ -1.29
TRIM39-202ENST00000376659 BEX4Q9NWD9 120 aaPredicted RBP7.02□□□□□ -1.29
TRIM39-202ENST00000376659 K7ERJ3 54 aa7.02□□□□□ -1.29
TRIM39-202ENST00000376659 ZNF688P0C7X2 276 aa7.02□□□□□ -1.29
TRIM39-202ENST00000376659 ZNF876PQ49A33 203 aa7.02□□□□□ -1.29
TRIM39-202ENST00000376659 PRSS1P07477 247 aa7.01□□□□□ -1.29
TRIM39-202ENST00000376659 SYNJ2BPP57105 145 aa7.01□□□□□ -1.29
TRIM39-202ENST00000376659 C11orf72Q8NBR9 251 aa7.01□□□□□ -1.29
TRIM39-202ENST00000376659 CITED2Q99967 270 aaPredicted RBP7.01□□□□□ -1.29
TRIM39-202ENST00000376659 TMEM160Q9NX00 188 aa7.01□□□□□ -1.29
TRIM39-202ENST00000376659 ANK2Q01484 3957 aa7.01□□□□□ -1.29
TRIM39-202ENST00000376659 ITPR3Q14573 2671 aa7.01□□□□□ -1.29
TRIM39-202ENST00000376659 PPP1R17O96001 155 aa7.01□□□□□ -1.29
TRIM39-202ENST00000376659 RPL39P62891 51 aaKnown RBP7.01□□□□□ -1.29
TRIM39-202ENST00000376659 DEFB113Q30KQ7 82 aa7.01□□□□□ -1.29
TRIM39-202ENST00000376659 C4orf3Q8WVX3 66 aa7.01□□□□□ -1.29
TRIM39-202ENST00000376659 IGKV3-7A0A075B6H7 116 aa7.01□□□□□ -1.29
TRIM39-202ENST00000376659 EIF4EBP3O60516 100 aaPredicted RBP7.01□□□□□ -1.29
TRIM39-202ENST00000376659 FHL3Q13643 280 aa7.01□□□□□ -1.29
TRIM39-202ENST00000376659 NFE4Q86UQ8 179 aa7.01□□□□□ -1.29
TRIM39-202ENST00000376659 TEX29Q8N6K0 151 aa7.01□□□□□ -1.29
TRIM39-202ENST00000376659 ACACBO00763 2458 aa7□□□□□ -1.29
TRIM39-202ENST00000376659 TRBV20-1A0A075B6N2 111 aa7□□□□□ -1.29
TRIM39-202ENST00000376659 IGHV1OR15-1A0A075B7D0 117 aa7□□□□□ -1.29
TRIM39-202ENST00000376659 MYMXA0A1B0GTQ4 84 aa7□□□□□ -1.29
TRIM39-202ENST00000376659 C11orf86A6NJI1 115 aa7□□□□□ -1.29
TRIM39-202ENST00000376659 SLURP1P55000 103 aa7□□□□□ -1.29
TRIM39-202ENST00000376659 ZFAND6Q6FIF0 208 aa7□□□□□ -1.29
TRIM39-202ENST00000376659 PLEKHB2Q96CS7 222 aa7□□□□□ -1.29
TRIM39-202ENST00000376659 SCGB3A1Q96QR1 104 aa7□□□□□ -1.29
TRIM39-202ENST00000376659 PTPN13Q12923 2485 aa7□□□□□ -1.29
TRIM39-202ENST00000376659 NF1P21359 2839 aa7□□□□□ -1.29
TRIM39-202ENST00000376659 A0A087WWL8 130 aa7□□□□□ -1.29
TRIM39-202ENST00000376659 PRO0461Q9UI25 63 aa7□□□□□ -1.29
TRIM39-202ENST00000376659 TP53TG1Q9Y2A0 90 aa7□□□□□ -1.29
TRIM39-202ENST00000376659 USP9YO00507 2555 aaPredicted RBP7□□□□□ -1.29
TRIM39-202ENST00000376659 TLN2Q9Y4G6 2542 aa7□□□□□ -1.29
TRIM39-202ENST00000376659 CCDC179H3BU77 68 aa7□□□□□ -1.29
TRIM39-202ENST00000376659 MGPP08493 103 aa7□□□□□ -1.29
TRIM39-202ENST00000376659 PIK3CD-AS1Q5SR53 167 aa7□□□□□ -1.29
TRIM39-202ENST00000376659 FAM159AQ6UWV7 190 aa7□□□□□ -1.29
TRIM39-202ENST00000376659 CD7P09564 240 aa6.99□□□□□ -1.29
TRIM39-202ENST00000376659 UBE2D1P51668 147 aa6.99□□□□□ -1.29
TRIM39-202ENST00000376659 H3BMM0 161 aa6.99□□□□□ -1.29
TRIM39-202ENST00000376659 SPINK13Q1W4C9 94 aa6.99□□□□□ -1.29
TRIM39-202ENST00000376659 CSDC2Q9Y534 153 aaKnown RBP6.99□□□□□ -1.29
TRIM39-202ENST00000376659 F8W1H4 67 aa6.98□□□□□ -1.29
TRIM39-202ENST00000376659 RPL11P62913 178 aaKnown RBP6.98□□□□□ -1.29
TRIM39-202ENST00000376659 TMEM141Q96I45 108 aa6.98□□□□□ -1.29
TRIM39-202ENST00000376659 ZNF462Q96JM2 2506 aa6.98□□□□□ -1.29
TRIM39-202ENST00000376659 SDHAF1A6NFY7 115 aa6.98□□□□□ -1.29
TRIM39-202ENST00000376659 S100A4P26447 101 aaKnown RBP6.98□□□□□ -1.29
TRIM39-202ENST00000376659 XGP55808 180 aa6.98□□□□□ -1.29
TRIM39-202ENST00000376659 DEFB136Q30KP8 78 aa6.98□□□□□ -1.29
TRIM39-202ENST00000376659 Q6ZSN1 163 aa6.98□□□□□ -1.29
TRIM39-202ENST00000376659 Q6ZUT4 128 aa6.98□□□□□ -1.29
TRIM39-202ENST00000376659 Q9UF83 564 aa6.98□□□□□ -1.29
TRIM39-202ENST00000376659 SMIM13P0DJ93 91 aa6.98□□□□□ -1.29
TRIM39-202ENST00000376659 RHOHQ15669 191 aa6.98□□□□□ -1.29
TRIM39-202ENST00000376659 PRADC1Q9BSG0 188 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms