RNA–Protein interactions for RNA: ENST00000367257.8

SYNE1-209, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 5,022 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-209ENST00000367257 ROS1P08922 2347 aa6.89□□□□□ -1.31
SYNE1-209ENST00000367257 TRAV12-2A0A075B6T6 113 aa6.89□□□□□ -1.31
SYNE1-209ENST00000367257 IGHV7-81A0A0B4J1V7 117 aa6.89□□□□□ -1.31
SYNE1-209ENST00000367257 TP53TG3Q9ULZ0 132 aa6.89□□□□□ -1.31
SYNE1-209ENST00000367257 TRBV7-3A0A075B6L6 115 aa6.89□□□□□ -1.31
SYNE1-209ENST00000367257 C19orf71A6NCJ1 209 aa6.89□□□□□ -1.31
SYNE1-209ENST00000367257 MYCNOSP40205 109 aa6.89□□□□□ -1.31
SYNE1-209ENST00000367257 DAZAP2Q15038 168 aaPredicted RBP6.89□□□□□ -1.31
SYNE1-209ENST00000367257 BAALCQ8WXS3 180 aa6.89□□□□□ -1.31
SYNE1-209ENST00000367257 CAMK2N2Q96S95 79 aa6.89□□□□□ -1.31
SYNE1-209ENST00000367257 IGHV3-38A0A0C4DH36 116 aa6.89□□□□□ -1.31
SYNE1-209ENST00000367257 CTSGP08311 255 aa6.89□□□□□ -1.31
SYNE1-209ENST00000367257 LINC00574Q9H8X3 128 aa6.89□□□□□ -1.31
SYNE1-209ENST00000367257 ZNF503-AS2A6NEH8 195 aa6.88□□□□□ -1.31
SYNE1-209ENST00000367257 ASPHD1Q5U4P2 390 aa6.88□□□□□ -1.31
SYNE1-209ENST00000367257 DEFB104AQ8WTQ1 72 aa6.88□□□□□ -1.31
SYNE1-209ENST00000367257 DIRC1Q969H9 104 aa6.88□□□□□ -1.31
SYNE1-209ENST00000367257 ZNF503Q96F45 646 aa6.88□□□□□ -1.31
SYNE1-209ENST00000367257 CHKB-CPT1BH3BT56 60 aa6.88□□□□□ -1.31
SYNE1-209ENST00000367257 CCL24O00175 119 aa6.88□□□□□ -1.31
SYNE1-209ENST00000367257 FRMD6-AS1P0C7T7 363 aa6.88□□□□□ -1.31
SYNE1-209ENST00000367257 RPL18AQ02543 176 aaKnown RBP6.88□□□□□ -1.31
SYNE1-209ENST00000367257 C14orf177Q52M58 125 aa6.88□□□□□ -1.31
SYNE1-209ENST00000367257 Q96MF0 132 aa6.88□□□□□ -1.31
SYNE1-209ENST00000367257 SERP1Q9Y6X1 66 aa6.88□□□□□ -1.31
SYNE1-209ENST00000367257 LOC107984640A0A0U1RRK4 108 aa6.88□□□□□ -1.31
SYNE1-209ENST00000367257 LYRM9A8MSI8 78 aa6.88□□□□□ -1.31
SYNE1-209ENST00000367257 NDUFC1O43677 76 aa6.88□□□□□ -1.31
SYNE1-209ENST00000367257 C11orf1Q9H5F2 150 aa6.88□□□□□ -1.31
SYNE1-209ENST00000367257 C2orf91Q6ZV80 131 aa6.88□□□□□ -1.31
SYNE1-209ENST00000367257 ZNRD1Q9P1U0 126 aa6.88□□□□□ -1.31
SYNE1-209ENST00000367257 GNRH2O43555 120 aa6.87□□□□□ -1.31
SYNE1-209ENST00000367257 MRPS36P82909 103 aaKnown RBP6.87□□□□□ -1.31
SYNE1-209ENST00000367257 PATE2Q6UY27 113 aa6.87□□□□□ -1.31
SYNE1-209ENST00000367257 FGF23Q9GZV9 251 aaPredicted RBP6.87□□□□□ -1.31
SYNE1-209ENST00000367257 CTSZQ9UBR2 303 aa6.87□□□□□ -1.31
SYNE1-209ENST00000367257 TRBV12-3P01733 135 aa6.87□□□□□ -1.31
SYNE1-209ENST00000367257 CCL18P55774 89 aa6.87□□□□□ -1.31
SYNE1-209ENST00000367257 MUC7Q8TAX7 377 aa6.87□□□□□ -1.31
SYNE1-209ENST00000367257 NOP10Q9NPE3 64 aaKnown RBP6.87□□□□□ -1.31
SYNE1-209ENST00000367257 TRAV23DV6A0A075B6W5 121 aa6.87□□□□□ -1.31
SYNE1-209ENST00000367257 THADAQ6YHU6 1953 aa6.87□□□□□ -1.31
SYNE1-209ENST00000367257 A0A1B0GXF2 115 aa6.87□□□□□ -1.31
SYNE1-209ENST00000367257 XCL1P47992 114 aa6.87□□□□□ -1.31
SYNE1-209ENST00000367257 TIRAPP58753 221 aa6.87□□□□□ -1.31
SYNE1-209ENST00000367257 MIAQ16674 131 aa6.87□□□□□ -1.31
SYNE1-209ENST00000367257 FBXL19-AS1Q494R0 122 aa6.87□□□□□ -1.31
SYNE1-209ENST00000367257 HIGD2BQ4VC39 106 aa6.87□□□□□ -1.31
SYNE1-209ENST00000367257 C20orf203Q8NBC4 194 aa6.87□□□□□ -1.31
SYNE1-209ENST00000367257 HIST2H2BCQ6DN03 193 aa6.86□□□□□ -1.31
SYNE1-209ENST00000367257 FANCD2OSQ96PS1 177 aa6.86□□□□□ -1.31
SYNE1-209ENST00000367257 TNRC6BQ9UPQ9 1833 aaKnown RBP6.86□□□□□ -1.31
SYNE1-209ENST00000367257 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.86□□□□□ -1.31
SYNE1-209ENST00000367257 IGKV2-29A2NJV5 120 aaPredicted RBP6.86□□□□□ -1.31
SYNE1-209ENST00000367257 CFHR3Q02985 330 aa6.86□□□□□ -1.31
SYNE1-209ENST00000367257 SDIM1Q6ZPB5 146 aa6.86□□□□□ -1.31
SYNE1-209ENST00000367257 CLEC2BQ92478 149 aa6.86□□□□□ -1.31
SYNE1-209ENST00000367257 BSNQ9UPA5 3926 aa6.86□□□□□ -1.31
SYNE1-209ENST00000367257 IGKV2D-24A0A075B6R9 120 aa6.86□□□□□ -1.31
SYNE1-209ENST00000367257 A0A0J9YXV3 536 aa6.86□□□□□ -1.31
SYNE1-209ENST00000367257 C5orf56Q8N8D9 126 aa6.86□□□□□ -1.31
SYNE1-209ENST00000367257 IL17DQ8TAD2 202 aa6.86□□□□□ -1.31
SYNE1-209ENST00000367257 IGLV2-23P01705 113 aa6.86□□□□□ -1.31
SYNE1-209ENST00000367257 PLXNB3Q9ULL4 1909 aa6.85□□□□□ -1.31
SYNE1-209ENST00000367257 PLXND1Q9Y4D7 1925 aa6.85□□□□□ -1.31
SYNE1-209ENST00000367257 VPREB1P12018 145 aa6.85□□□□□ -1.31
SYNE1-209ENST00000367257 C4orf3Q8WVX3 66 aa6.85□□□□□ -1.31
SYNE1-209ENST00000367257 PRORYQ9H606 182 aa6.85□□□□□ -1.31
SYNE1-209ENST00000367257 TEX22C9J3V5 150 aa6.85□□□□□ -1.31
SYNE1-209ENST00000367257 IGLV1-47P01700 117 aa6.85□□□□□ -1.31
SYNE1-209ENST00000367257 LOXL1Q08397 574 aaPredicted RBP6.85□□□□□ -1.31
SYNE1-209ENST00000367257 Q8N9W7 124 aa6.85□□□□□ -1.31
SYNE1-209ENST00000367257 KIR2DL5BQ8NHK3 375 aa6.85□□□□□ -1.31
SYNE1-209ENST00000367257 C17orf77Q96MU5 243 aa6.85□□□□□ -1.31
SYNE1-209ENST00000367257 MRPS12O15235 138 aaKnown RBP6.85□□□□□ -1.31
SYNE1-209ENST00000367257 P0C879 139 aa6.85□□□□□ -1.31
SYNE1-209ENST00000367257 ASPMQ8IZT6 3477 aa6.84□□□□□ -1.31
SYNE1-209ENST00000367257 WISP1O95388 367 aa6.84□□□□□ -1.31
SYNE1-209ENST00000367257 PRB1P04280 392 aa6.84□□□□□ -1.31
SYNE1-209ENST00000367257 P0DMU3 169 aa6.84□□□□□ -1.31
SYNE1-209ENST00000367257 FAM231AP0DMU4 169 aa6.84□□□□□ -1.31
SYNE1-209ENST00000367257 FAM231CP0DMU5 169 aa6.84□□□□□ -1.31
SYNE1-209ENST00000367257 GYPEP15421 78 aa6.84□□□□□ -1.31
SYNE1-209ENST00000367257 TMEM263Q8WUH6 116 aaKnown RBP6.84□□□□□ -1.31
SYNE1-209ENST00000367257 PROP1O75360 226 aa6.84□□□□□ -1.31
SYNE1-209ENST00000367257 DEFB112Q30KQ8 113 aa6.84□□□□□ -1.31
SYNE1-209ENST00000367257 TMEM61Q8N0U2 210 aa6.84□□□□□ -1.31
SYNE1-209ENST00000367257 AJUBAQ96IF1 538 aa6.84□□□□□ -1.31
SYNE1-209ENST00000367257 J3QKU1 62 aa6.84□□□□□ -1.31
SYNE1-209ENST00000367257 NDUFS5O43920 106 aa6.84□□□□□ -1.31
SYNE1-209ENST00000367257 CGB3P0DN86 165 aa6.84□□□□□ -1.31
SYNE1-209ENST00000367257 HIST2H2BDQ6DRA6 164 aa6.84□□□□□ -1.31
SYNE1-209ENST00000367257 SONP18583 2426 aaKnown RBP6.84□□□□□ -1.32
SYNE1-209ENST00000367257 LY6HO94772 140 aa6.84□□□□□ -1.32
SYNE1-209ENST00000367257 DIAPH2-AS1Q14236 149 aa6.84□□□□□ -1.32
SYNE1-209ENST00000367257 FAM222AQ5U5X8 452 aa6.84□□□□□ -1.32
SYNE1-209ENST00000367257 RPL39LQ96EH5 51 aaKnown RBP6.84□□□□□ -1.32
SYNE1-209ENST00000367257 PCNX1Q96RV3 2341 aa6.83□□□□□ -1.32
SYNE1-209ENST00000367257 USP17L23D6RBM5 183 aa6.83□□□□□ -1.32
SYNE1-209ENST00000367257 PRSS33Q8NF86 280 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms