RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 WI2-2373I1.2A0A1W2PRP0 233 aa11.91□□□□□ -0.5
PTPRF-201ENST00000359947 IGLV1-47P01700 117 aa11.91□□□□□ -0.5
PTPRF-201ENST00000359947 CCL25O15444 150 aa11.91□□□□□ -0.5
PTPRF-201ENST00000359947 CHKB-CPT1BH3BT56 60 aa11.91□□□□□ -0.5
PTPRF-201ENST00000359947 ODF3L1Q8IXM7 274 aa11.91□□□□□ -0.5
PTPRF-201ENST00000359947 CACNA1AO00555 2505 aa11.91□□□□□ -0.5
PTPRF-201ENST00000359947 P0DMU3 169 aa11.91□□□□□ -0.5
PTPRF-201ENST00000359947 FAM231AP0DMU4 169 aa11.91□□□□□ -0.5
PTPRF-201ENST00000359947 FAM231CP0DMU5 169 aa11.91□□□□□ -0.5
PTPRF-201ENST00000359947 IGLV2-18A0A075B6J9 118 aa11.9□□□□□ -0.5
PTPRF-201ENST00000359947 A0A1W2PPM0 123 aa11.9□□□□□ -0.5
PTPRF-201ENST00000359947 GAGE12HA6NDE8 117 aa11.9□□□□□ -0.5
PTPRF-201ENST00000359947 HILS1P60008 231 aa11.9□□□□□ -0.5
PTPRF-201ENST00000359947 A0A096LNI7 61 aa11.9□□□□□ -0.5
PTPRF-201ENST00000359947 DEFB131BA0A096LNP1 70 aa11.9□□□□□ -0.5
PTPRF-201ENST00000359947 LMO4P61968 165 aa11.9□□□□□ -0.5
PTPRF-201ENST00000359947 PRO0255Q9UI72 69 aa11.9□□□□□ -0.5
PTPRF-201ENST00000359947 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.9□□□□□ -0.5
PTPRF-201ENST00000359947 NDUFB1O75438 58 aa11.9□□□□□ -0.5
PTPRF-201ENST00000359947 FBXL19-AS1Q494R0 122 aa11.9□□□□□ -0.5
PTPRF-201ENST00000359947 C12orf74Q32Q52 190 aa11.9□□□□□ -0.51
PTPRF-201ENST00000359947 Q6YL49 198 aa11.89□□□□□ -0.51
PTPRF-201ENST00000359947 FAM222AQ5U5X8 452 aa11.89□□□□□ -0.51
PTPRF-201ENST00000359947 TP53TG3Q9ULZ0 132 aa11.89□□□□□ -0.51
PTPRF-201ENST00000359947 TNFRSF13BO14836 293 aaPredicted RBP11.89□□□□□ -0.51
PTPRF-201ENST00000359947 CFC1BP0CG36 223 aa11.89□□□□□ -0.51
PTPRF-201ENST00000359947 CFC1P0CG37 223 aa11.89□□□□□ -0.51
PTPRF-201ENST00000359947 MUSTN1Q8IVN3 82 aa11.89□□□□□ -0.51
PTPRF-201ENST00000359947 PCNX3Q9H6A9 2034 aa11.88□□□□□ -0.51
PTPRF-201ENST00000359947 CRYGDP07320 174 aa11.88□□□□□ -0.51
PTPRF-201ENST00000359947 CEMP1Q6PRD7 247 aaPredicted RBP11.88□□□□□ -0.51
PTPRF-201ENST00000359947 ZNF747Q9BV97 191 aa11.88□□□□□ -0.51
PTPRF-201ENST00000359947 TMEM258P61165 79 aa11.88□□□□□ -0.51
PTPRF-201ENST00000359947 LRRC75A-AS1Q8N1F1 130 aa11.88□□□□□ -0.51
PTPRF-201ENST00000359947 C20orf144Q9BQM9 153 aa11.88□□□□□ -0.51
PTPRF-201ENST00000359947 C22orf34Q6ZV56 151 aa11.88□□□□□ -0.51
PTPRF-201ENST00000359947 NTN5Q8WTR8 489 aaPredicted RBP11.88□□□□□ -0.51
PTPRF-201ENST00000359947 K7EP34 96 aa11.87□□□□□ -0.51
PTPRF-201ENST00000359947 LINC00269Q8N2A0 174 aa11.87□□□□□ -0.51
PTPRF-201ENST00000359947 OPRPNQ99935 248 aaPredicted RBP11.87□□□□□ -0.51
PTPRF-201ENST00000359947 Q6ZTI0 123 aa11.87□□□□□ -0.51
PTPRF-201ENST00000359947 KIAA1549LQ6ZVL6 1849 aa11.87□□□□□ -0.51
PTPRF-201ENST00000359947 LYPD6BQ8NI32 183 aa11.87□□□□□ -0.51
PTPRF-201ENST00000359947 A0A0J9YX75 114 aa11.86□□□□□ -0.51
PTPRF-201ENST00000359947 H0Y9J4 135 aa11.86□□□□□ -0.51
PTPRF-201ENST00000359947 MYO18BQ8IUG5 2567 aa11.86□□□□□ -0.51
PTPRF-201ENST00000359947 ANKHD1Q8IWZ3 2542 aaKnown RBP11.86□□□□□ -0.51
PTPRF-201ENST00000359947 C10orf99Q6UWK7 81 aa11.85□□□□□ -0.51
PTPRF-201ENST00000359947 SHISA2Q6UWI4 295 aa11.85□□□□□ -0.51
PTPRF-201ENST00000359947 TMEM89A2RUT3 159 aa11.85□□□□□ -0.51
PTPRF-201ENST00000359947 LINC00173Q6ZV60 143 aa11.85□□□□□ -0.51
PTPRF-201ENST00000359947 HIGD2AQ9BW72 106 aa11.85□□□□□ -0.51
PTPRF-201ENST00000359947 A0A087WZ39 114 aa11.84□□□□□ -0.51
PTPRF-201ENST00000359947 PRSS47A8MTI9 375 aa11.84□□□□□ -0.51
PTPRF-201ENST00000359947 B9D2Q9BPU9 175 aa11.84□□□□□ -0.51
PTPRF-201ENST00000359947 LY6G6CO95867 125 aa11.84□□□□□ -0.51
PTPRF-201ENST00000359947 CCDC140Q96MF4 163 aa11.84□□□□□ -0.51
PTPRF-201ENST00000359947 C14orf132Q9NPU4 83 aa11.84□□□□□ -0.51
PTPRF-201ENST00000359947 BAALCQ8WXS3 180 aa11.83□□□□□ -0.52
PTPRF-201ENST00000359947 LECT2O14960 151 aa11.83□□□□□ -0.52
PTPRF-201ENST00000359947 SPATA25Q9BR10 227 aa11.83□□□□□ -0.52
PTPRF-201ENST00000359947 NREPQ16612 68 aa11.83□□□□□ -0.52
PTPRF-201ENST00000359947 FAM167A-AS1Q96KT0 104 aa11.83□□□□□ -0.52
PTPRF-201ENST00000359947 SMR3AQ99954 134 aa11.83□□□□□ -0.52
PTPRF-201ENST00000359947 ABCA2Q9BZC7 2435 aa11.82□□□□□ -0.52
PTPRF-201ENST00000359947 PRRC2AP48634 2157 aaKnown RBP11.82□□□□□ -0.52
PTPRF-201ENST00000359947 MIR7-3HGQ8N6C7 128 aa11.82□□□□□ -0.52
PTPRF-201ENST00000359947 A4D1N5 150 aa11.82□□□□□ -0.52
PTPRF-201ENST00000359947 B5MCH6 92 aa11.82□□□□□ -0.52
PTPRF-201ENST00000359947 Q6ZSV7 163 aa11.82□□□□□ -0.52
PTPRF-201ENST00000359947 SS18L2Q9UHA2 77 aa11.82□□□□□ -0.52
PTPRF-201ENST00000359947 IGLV2-14P01704 120 aa11.81□□□□□ -0.52
PTPRF-201ENST00000359947 DIRC1Q969H9 104 aa11.81□□□□□ -0.52
PTPRF-201ENST00000359947 CCDC168Q8NDH2 2452 aa11.81□□□□□ -0.52
PTPRF-201ENST00000359947 COL4A4P53420 1690 aaPredicted RBP11.81□□□□□ -0.52
PTPRF-201ENST00000359947 REG3AQ06141 175 aa11.8□□□□□ -0.52
PTPRF-201ENST00000359947 IGKV3D-7A0A0C4DH55 119 aa11.8□□□□□ -0.52
PTPRF-201ENST00000359947 C14orf177Q52M58 125 aa11.8□□□□□ -0.52
PTPRF-201ENST00000359947 WFDC9Q8NEX5 89 aa11.8□□□□□ -0.52
PTPRF-201ENST00000359947 TRBV6-1A0A0K0K1D8 114 aa11.8□□□□□ -0.52
PTPRF-201ENST00000359947 DEFB114Q30KQ6 69 aa11.8□□□□□ -0.52
PTPRF-201ENST00000359947 PLA2G2AP14555 144 aa11.79□□□□□ -0.52
PTPRF-201ENST00000359947 Q6ZUT4 128 aa11.79□□□□□ -0.52
PTPRF-201ENST00000359947 SPANXDQ9BXN6 97 aa11.79□□□□□ -0.52
PTPRF-201ENST00000359947 TTTY13Q9BZ97 58 aa11.78□□□□□ -0.52
PTPRF-201ENST00000359947 PLA2G2EQ9NZK7 142 aa11.78□□□□□ -0.52
PTPRF-201ENST00000359947 LTBP2Q14767 1821 aa11.78□□□□□ -0.52
PTPRF-201ENST00000359947 Q6ZVH6 145 aa11.78□□□□□ -0.52
PTPRF-201ENST00000359947 IL15RAQ13261 267 aa11.77□□□□□ -0.52
PTPRF-201ENST00000359947 ARHGAP32A7KAX9 2087 aa11.77□□□□□ -0.52
PTPRF-201ENST00000359947 TOMM6Q96B49 74 aa11.77□□□□□ -0.52
PTPRF-201ENST00000359947 ODF3BA8MYP8 253 aa11.77□□□□□ -0.53
PTPRF-201ENST00000359947 DOPEY1Q5JWR5 2465 aa11.76□□□□□ -0.53
PTPRF-201ENST00000359947 SIVA1O15304 175 aa11.76□□□□□ -0.53
PTPRF-201ENST00000359947 CXCL5P42830 114 aa11.76□□□□□ -0.53
PTPRF-201ENST00000359947 FAM19A5Q7Z5A7 132 aaPredicted RBP11.76□□□□□ -0.53
PTPRF-201ENST00000359947 C18orf65Q6ZTR6 163 aa11.76□□□□□ -0.53
PTPRF-201ENST00000359947 CLEC2BQ92478 149 aa11.76□□□□□ -0.53
PTPRF-201ENST00000359947 H0YGX0 51 aa11.76□□□□□ -0.53
PTPRF-201ENST00000359947 FAM19A1Q7Z5A9 133 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 266.8 ms