RNA–Protein interactions for RNA: ENST00000359759.8

COL18A1-203, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL18A1, Length 6,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-203ENST00000359759 IGLC6P0CF74 106 aa12.26□□□□□ -0.45
COL18A1-203ENST00000359759 MRPL55Q7Z7F7 128 aaKnown RBP12.26□□□□□ -0.45
COL18A1-203ENST00000359759 HIGD2AQ9BW72 106 aa12.26□□□□□ -0.45
COL18A1-203ENST00000359759 PLXNA2O75051 1894 aa12.26□□□□□ -0.45
COL18A1-203ENST00000359759 CTRLP40313 264 aa12.25□□□□□ -0.45
COL18A1-203ENST00000359759 COL6A6A6NMZ7 2263 aa12.25□□□□□ -0.45
COL18A1-203ENST00000359759 C3orf22Q8N5N4 141 aa12.25□□□□□ -0.45
COL18A1-203ENST00000359759 LINC00643Q86TS7 51 aa12.25□□□□□ -0.45
COL18A1-203ENST00000359759 TP73-AS1Q9UF72 201 aa12.25□□□□□ -0.45
COL18A1-203ENST00000359759 SPTBN1Q01082 2364 aaKnown RBP12.24□□□□□ -0.45
COL18A1-203ENST00000359759 FAM236DA0A1B0GTK5 79 aa12.24□□□□□ -0.45
COL18A1-203ENST00000359759 FAM236CP0DP71 79 aa12.24□□□□□ -0.45
COL18A1-203ENST00000359759 UNQ9165/PRO28630Q6UXU0 137 aa12.24□□□□□ -0.45
COL18A1-203ENST00000359759 USP17L23D6RBM5 183 aa12.23□□□□□ -0.45
COL18A1-203ENST00000359759 FRMPD3Q5JV73 1810 aa12.23□□□□□ -0.45
COL18A1-203ENST00000359759 A0A0J9YXY3 114 aa12.23□□□□□ -0.45
COL18A1-203ENST00000359759 LINC00269Q8N2A0 174 aa12.23□□□□□ -0.45
COL18A1-203ENST00000359759 ARHGAP21Q5T5U3 1957 aa12.22□□□□□ -0.45
COL18A1-203ENST00000359759 TRBV6-1A0A0K0K1D8 114 aa12.22□□□□□ -0.45
COL18A1-203ENST00000359759 NCOR1O75376 2440 aa12.21□□□□□ -0.45
COL18A1-203ENST00000359759 C4orf3Q8WVX3 66 aa12.21□□□□□ -0.45
COL18A1-203ENST00000359759 ZFP36P26651 326 aaKnown RBP12.21□□□□□ -0.45
COL18A1-203ENST00000359759 CNOT1A5YKK6 2376 aaKnown RBP12.21□□□□□ -0.45
COL18A1-203ENST00000359759 WT1P19544 449 aaPredicted RBP12.21□□□□□ -0.45
COL18A1-203ENST00000359759 PIK3CD-AS1Q5SR53 167 aa12.21□□□□□ -0.45
COL18A1-203ENST00000359759 ZNF407Q9C0G0 2248 aa12.21□□□□□ -0.46
COL18A1-203ENST00000359759 NLRC5Q86WI3 1866 aa12.21□□□□□ -0.46
COL18A1-203ENST00000359759 C20orf203Q8NBC4 194 aa12.2□□□□□ -0.46
COL18A1-203ENST00000359759 Q8NFD4 153 aa12.2□□□□□ -0.46
COL18A1-203ENST00000359759 OBSL1O75147 1896 aa12.2□□□□□ -0.46
COL18A1-203ENST00000359759 IGLV2-14P01704 120 aa12.2□□□□□ -0.46
COL18A1-203ENST00000359759 FAM19A1Q7Z5A9 133 aa12.2□□□□□ -0.46
COL18A1-203ENST00000359759 ABCA1O95477 2261 aa12.2□□□□□ -0.46
COL18A1-203ENST00000359759 MED14OSP0DP75 135 aa12.19□□□□□ -0.46
COL18A1-203ENST00000359759 THSD7BQ9C0I4 1608 aa12.19□□□□□ -0.46
COL18A1-203ENST00000359759 GPHB5Q86YW7 130 aa12.19□□□□□ -0.46
COL18A1-203ENST00000359759 ODF3L1Q8IXM7 274 aa12.19□□□□□ -0.46
COL18A1-203ENST00000359759 C10orf105Q8TEF2 133 aa12.19□□□□□ -0.46
COL18A1-203ENST00000359759 DCANP1Q8TF63 244 aa12.19□□□□□ -0.46
COL18A1-203ENST00000359759 USF3Q68DE3 2245 aa12.19□□□□□ -0.46
COL18A1-203ENST00000359759 NDUFC2-KCTD14E9PQ53 114 aa12.19□□□□□ -0.46
COL18A1-203ENST00000359759 ZNF80P51504 273 aaPredicted RBP12.19□□□□□ -0.46
COL18A1-203ENST00000359759 ZFAND2AQ8N6M9 145 aa12.19□□□□□ -0.46
COL18A1-203ENST00000359759 HIST2H2BDQ6DRA6 164 aa12.18□□□□□ -0.46
COL18A1-203ENST00000359759 SNURFQ9Y675 71 aa12.18□□□□□ -0.46
COL18A1-203ENST00000359759 GTF3C1Q12789 2109 aa12.18□□□□□ -0.46
COL18A1-203ENST00000359759 Q8N7P7 452 aa12.18□□□□□ -0.46
COL18A1-203ENST00000359759 SLX1AQ9BQ83 275 aa12.18□□□□□ -0.46
COL18A1-203ENST00000359759 KRTAP27-1Q3LI81 207 aa12.18□□□□□ -0.46
COL18A1-203ENST00000359759 FAM240AA0A1B0GVK7 77 aa12.17□□□□□ -0.46
COL18A1-203ENST00000359759 IGKV1D-37A0A075B6S9 117 aa12.17□□□□□ -0.46
COL18A1-203ENST00000359759 REG3AQ06141 175 aa12.17□□□□□ -0.46
COL18A1-203ENST00000359759 PLA2G2CQ5R387 149 aa12.17□□□□□ -0.46
COL18A1-203ENST00000359759 LINC00467Q9BRT7 94 aa12.17□□□□□ -0.46
COL18A1-203ENST00000359759 MAP6D1Q9H9H5 199 aa12.17□□□□□ -0.46
COL18A1-203ENST00000359759 KLK5Q9Y337 293 aaPredicted RBP12.16□□□□□ -0.46
COL18A1-203ENST00000359759 C19orf71A6NCJ1 209 aa12.16□□□□□ -0.46
COL18A1-203ENST00000359759 UQCRQO14949 82 aa12.16□□□□□ -0.46
COL18A1-203ENST00000359759 MGAMO43451 1857 aa12.16□□□□□ -0.46
COL18A1-203ENST00000359759 PDE6GP18545 87 aa12.16□□□□□ -0.46
COL18A1-203ENST00000359759 ABCA4P78363 2273 aa12.16□□□□□ -0.46
COL18A1-203ENST00000359759 LINC00322Q6ZN03 302 aaPredicted RBP12.16□□□□□ -0.46
COL18A1-203ENST00000359759 Q6ZTI0 123 aa12.15□□□□□ -0.46
COL18A1-203ENST00000359759 PRO0255Q9UI72 69 aa12.15□□□□□ -0.46
COL18A1-203ENST00000359759 K7EMT4 169 aa12.15□□□□□ -0.46
COL18A1-203ENST00000359759 GDF5OSQ5U4N7 250 aa12.15□□□□□ -0.46
COL18A1-203ENST00000359759 HRCT1Q6UXD1 115 aa12.15□□□□□ -0.46
COL18A1-203ENST00000359759 C3orf84H3BNL1 204 aa12.15□□□□□ -0.46
COL18A1-203ENST00000359759 FAM19A5Q7Z5A7 132 aaPredicted RBP12.15□□□□□ -0.46
COL18A1-203ENST00000359759 A0A087WZ39 114 aa12.15□□□□□ -0.47
COL18A1-203ENST00000359759 A0A0J9YX75 114 aa12.15□□□□□ -0.47
COL18A1-203ENST00000359759 SPANXB1Q9NS25 103 aaPredicted RBP12.14□□□□□ -0.47
COL18A1-203ENST00000359759 SMAD5-AS1Q9Y6J3 95 aa12.14□□□□□ -0.47
COL18A1-203ENST00000359759 GVINP1Q7Z2Y8 2422 aa12.13□□□□□ -0.47
COL18A1-203ENST00000359759 K7ERS5 55 aa12.13□□□□□ -0.47
COL18A1-203ENST00000359759 PRR4Q16378 134 aa12.13□□□□□ -0.47
COL18A1-203ENST00000359759 CHCHD10Q8WYQ3 142 aaPredicted RBP12.13□□□□□ -0.47
COL18A1-203ENST00000359759 WNK2Q9Y3S1 2297 aa12.13□□□□□ -0.47
COL18A1-203ENST00000359759 UFSP1Q6NVU6 142 aa12.12□□□□□ -0.47
COL18A1-203ENST00000359759 ADORA2A-AS1P86434 159 aa12.12□□□□□ -0.47
COL18A1-203ENST00000359759 C1orf158Q8N1D5 194 aa12.12□□□□□ -0.47
COL18A1-203ENST00000359759 IGHV4-30-4P0DP06 118 aa12.12□□□□□ -0.47
COL18A1-203ENST00000359759 IGHV4-31P0DP07 118 aa12.12□□□□□ -0.47
COL18A1-203ENST00000359759 V9GYY9 64 aa12.12□□□□□ -0.47
COL18A1-203ENST00000359759 TRBV10-1A0A0K0K1A3 114 aa12.12□□□□□ -0.47
COL18A1-203ENST00000359759 MYCNOSP40205 109 aa12.11□□□□□ -0.47
COL18A1-203ENST00000359759 TRIAP1O43715 76 aa12.11□□□□□ -0.47
COL18A1-203ENST00000359759 C11orf45Q8TAV5 145 aa12.11□□□□□ -0.47
COL18A1-203ENST00000359759 ACACAQ13085 2346 aa12.11□□□□□ -0.47
COL18A1-203ENST00000359759 PKDREJQ9NTG1 2253 aa12.11□□□□□ -0.47
COL18A1-203ENST00000359759 CRYGDP07320 174 aa12.1□□□□□ -0.47
COL18A1-203ENST00000359759 TMEM223A0PJW6 202 aa12.1□□□□□ -0.47
COL18A1-203ENST00000359759 MAPKAPK5-AS1Q8N8E1 139 aa12.1□□□□□ -0.47
COL18A1-203ENST00000359759 CDKN2A-AS1Q9UH64 79 aa12.1□□□□□ -0.47
COL18A1-203ENST00000359759 XAGE1AQ9HD64 81 aa12.1□□□□□ -0.47
COL18A1-203ENST00000359759 DENND4AQ7Z401 1863 aa12.09□□□□□ -0.47
COL18A1-203ENST00000359759 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.09□□□□□ -0.47
COL18A1-203ENST00000359759 LINC01548A6NM66 108 aa12.09□□□□□ -0.47
COL18A1-203ENST00000359759 IGF1P05019 195 aa12.09□□□□□ -0.47
COL18A1-203ENST00000359759 NEXN-AS1Q8NBZ9 246 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms