RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 SPTSSBQ8NFR3 76 aa5.53□□□□□ -1.52
VPS13A-202ENST00000357409 DIRC1Q969H9 104 aa5.53□□□□□ -1.52
VPS13A-202ENST00000357409 A0A1B0GX51 115 aa5.53□□□□□ -1.52
VPS13A-202ENST00000357409 FUSP35637 526 aaKnown RBP eCLIP5.53□□□□□ -1.52
VPS13A-202ENST00000357409 TMEM190Q8WZ59 177 aa5.53□□□□□ -1.52
VPS13A-202ENST00000357409 TRBV10-1A0A0K0K1A3 114 aa5.53□□□□□ -1.52
VPS13A-202ENST00000357409 TRBV6-1A0A0K0K1D8 114 aa5.53□□□□□ -1.52
VPS13A-202ENST00000357409 KIAA2026Q5HYC2 2103 aa5.53□□□□□ -1.52
VPS13A-202ENST00000357409 GFRA4Q9GZZ7 299 aa5.53□□□□□ -1.52
VPS13A-202ENST00000357409 LGALS9O00182 355 aa5.52□□□□□ -1.53
VPS13A-202ENST00000357409 DEFB114Q30KQ6 69 aa5.52□□□□□ -1.53
VPS13A-202ENST00000357409 CADP27708 2225 aa5.52□□□□□ -1.53
VPS13A-202ENST00000357409 THSD7BQ9C0I4 1608 aa5.52□□□□□ -1.53
VPS13A-202ENST00000357409 C11orf86A6NJI1 115 aa5.52□□□□□ -1.53
VPS13A-202ENST00000357409 ZDBF2Q9HCK1 2354 aa5.52□□□□□ -1.53
VPS13A-202ENST00000357409 K7EP13 123 aa5.52□□□□□ -1.53
VPS13A-202ENST00000357409 DAZAP2Q15038 168 aaPredicted RBP5.52□□□□□ -1.53
VPS13A-202ENST00000357409 CHCHD10Q8WYQ3 142 aaPredicted RBP5.52□□□□□ -1.53
VPS13A-202ENST00000357409 SBF2Q86WG5 1849 aa5.52□□□□□ -1.53
VPS13A-202ENST00000357409 IFITM1P13164 125 aa5.52□□□□□ -1.53
VPS13A-202ENST00000357409 CRIP2P52943 208 aaPredicted RBP5.51□□□□□ -1.53
VPS13A-202ENST00000357409 FXYD2P54710 66 aa5.51□□□□□ -1.53
VPS13A-202ENST00000357409 LY6LH3BQJ8 138 aa5.51□□□□□ -1.53
VPS13A-202ENST00000357409 NDUFA11Q86Y39 141 aa5.51□□□□□ -1.53
VPS13A-202ENST00000357409 B9D2Q9BPU9 175 aa5.51□□□□□ -1.53
VPS13A-202ENST00000357409 TEX49A0A1B0GTD5 131 aa5.51□□□□□ -1.53
VPS13A-202ENST00000357409 UBE2D3P61077 147 aa5.51□□□□□ -1.53
VPS13A-202ENST00000357409 SIVA1O15304 175 aa5.51□□□□□ -1.53
VPS13A-202ENST00000357409 INAFM2P0DMQ5 153 aa5.51□□□□□ -1.53
VPS13A-202ENST00000357409 LCTP09848 1927 aa5.51□□□□□ -1.53
VPS13A-202ENST00000357409 XIRP1Q702N8 1843 aaKnown RBP5.51□□□□□ -1.53
VPS13A-202ENST00000357409 Q0VG73 95 aa5.51□□□□□ -1.53
VPS13A-202ENST00000357409 TMEM14CQ9P0S9 112 aa5.51□□□□□ -1.53
VPS13A-202ENST00000357409 SIPA1L1O43166 1804 aa5.5□□□□□ -1.53
VPS13A-202ENST00000357409 KPRPQ5T749 579 aaPredicted RBP5.5□□□□□ -1.53
VPS13A-202ENST00000357409 Q6Q795 121 aa5.5□□□□□ -1.53
VPS13A-202ENST00000357409 DOPEY2Q9Y3R5 2298 aa5.5□□□□□ -1.53
VPS13A-202ENST00000357409 ADAMTS9Q9P2N4 1935 aa5.5□□□□□ -1.53
VPS13A-202ENST00000357409 FNDC10F2Z333 226 aa5.5□□□□□ -1.53
VPS13A-202ENST00000357409 IGLV1-47P01700 117 aa5.5□□□□□ -1.53
VPS13A-202ENST00000357409 CCDC140Q96MF4 163 aa5.5□□□□□ -1.53
VPS13A-202ENST00000357409 AKAP6Q13023 2319 aa5.5□□□□□ -1.53
VPS13A-202ENST00000357409 A0A0G2JMZ2 1700 aa5.5□□□□□ -1.53
VPS13A-202ENST00000357409 LRRC37A2A6NM11 1700 aa5.5□□□□□ -1.53
VPS13A-202ENST00000357409 A0A0J9YX75 114 aa5.5□□□□□ -1.53
VPS13A-202ENST00000357409 PSMB8P28062 276 aa5.5□□□□□ -1.53
VPS13A-202ENST00000357409 PRR3P79522 188 aaKnown RBP5.5□□□□□ -1.53
VPS13A-202ENST00000357409 WFDC13Q8IUB5 93 aa5.49□□□□□ -1.53
VPS13A-202ENST00000357409 TNRC6BQ9UPQ9 1833 aaKnown RBP5.49□□□□□ -1.53
VPS13A-202ENST00000357409 C11orf52Q96A22 123 aa5.49□□□□□ -1.53
VPS13A-202ENST00000357409 SEC61GP60059 68 aa5.49□□□□□ -1.53
VPS13A-202ENST00000357409 Q6ZS49 121 aa5.49□□□□□ -1.53
VPS13A-202ENST00000357409 TRAV1-1A0A0B4J248 108 aa5.49□□□□□ -1.53
VPS13A-202ENST00000357409 C20orf78Q9BR46 151 aa5.49□□□□□ -1.53
VPS13A-202ENST00000357409 FREM3P0C091 2139 aa5.48□□□□□ -1.53
VPS13A-202ENST00000357409 OVOL2Q9BRP0 275 aa5.48□□□□□ -1.53
VPS13A-202ENST00000357409 PLXND1Q9Y4D7 1925 aa5.48□□□□□ -1.53
VPS13A-202ENST00000357409 SPINK1P00995 79 aa5.48□□□□□ -1.53
VPS13A-202ENST00000357409 IGLV3-1P01715 115 aa5.48□□□□□ -1.53
VPS13A-202ENST00000357409 C9orf116Q5BN46 136 aaPredicted RBP5.48□□□□□ -1.53
VPS13A-202ENST00000357409 TUBGCP6Q96RT7 1819 aa5.48□□□□□ -1.53
VPS13A-202ENST00000357409 SHISA2Q6UWI4 295 aa5.48□□□□□ -1.53
VPS13A-202ENST00000357409 H3BUA1 57 aa5.48□□□□□ -1.53
VPS13A-202ENST00000357409 CELSR3Q9NYQ7 3312 aa5.48□□□□□ -1.53
VPS13A-202ENST00000357409 ZNF407Q9C0G0 2248 aa5.48□□□□□ -1.53
VPS13A-202ENST00000357409 HERV-K104P63124 156 aa5.48□□□□□ -1.53
VPS13A-202ENST00000357409 CDKN2A-AS1Q9UH64 79 aa5.48□□□□□ -1.53
VPS13A-202ENST00000357409 SDIM1Q6ZPB5 146 aa5.47□□□□□ -1.53
VPS13A-202ENST00000357409 ZFAND2AQ8N6M9 145 aa5.47□□□□□ -1.53
VPS13A-202ENST00000357409 SPRY4Q9C004 299 aa5.47□□□□□ -1.53
VPS13A-202ENST00000357409 LINC01620Q4KN68 170 aa5.47□□□□□ -1.53
VPS13A-202ENST00000357409 DSCAML1Q8TD84 2053 aa5.47□□□□□ -1.53
VPS13A-202ENST00000357409 FAM167A-AS1Q96KT0 104 aa5.47□□□□□ -1.53
VPS13A-202ENST00000357409 NCOR1O75376 2440 aa5.47□□□□□ -1.53
VPS13A-202ENST00000357409 CEP250Q9BV73 2442 aa5.47□□□□□ -1.53
VPS13A-202ENST00000357409 UBE2D2P62837 147 aa5.47□□□□□ -1.53
VPS13A-202ENST00000357409 FAM236AA0A1B0GUQ0 79 aa5.47□□□□□ -1.53
VPS13A-202ENST00000357409 FAM236BA0A1B0GV22 79 aa5.47□□□□□ -1.53
VPS13A-202ENST00000357409 PCNX2A6NKB5 2137 aa5.47□□□□□ -1.53
VPS13A-202ENST00000357409 GAS8-AS1O95177 125 aa5.46□□□□□ -1.53
VPS13A-202ENST00000357409 TNFRSF13BO14836 293 aaPredicted RBP5.46□□□□□ -1.53
VPS13A-202ENST00000357409 PLXNA4Q9HCM2 1894 aa5.46□□□□□ -1.54
VPS13A-202ENST00000357409 BRK1Q8WUW1 75 aa5.46□□□□□ -1.54
VPS13A-202ENST00000357409 ZNF702PQ9H963 129 aa5.46□□□□□ -1.54
VPS13A-202ENST00000357409 C6orf223Q8N319 242 aa5.46□□□□□ -1.54
VPS13A-202ENST00000357409 NEXN-AS1Q8NBZ9 246 aa5.46□□□□□ -1.54
VPS13A-202ENST00000357409 ANK1P16157 1881 aa5.46□□□□□ -1.54
VPS13A-202ENST00000357409 TMEM89A2RUT3 159 aa5.46□□□□□ -1.54
VPS13A-202ENST00000357409 C6orf99Q4VX62 202 aa5.46□□□□□ -1.54
VPS13A-202ENST00000357409 COX7BP24311 80 aa5.46□□□□□ -1.54
VPS13A-202ENST00000357409 CRIP1P50238 77 aa5.46□□□□□ -1.54
VPS13A-202ENST00000357409 Q6ZTC4 211 aa5.46□□□□□ -1.54
VPS13A-202ENST00000357409 A0A0U1RQV1 116 aa5.46□□□□□ -1.54
VPS13A-202ENST00000357409 IGLV4-69A0A075B6H9 119 aa5.45□□□□□ -1.54
VPS13A-202ENST00000357409 IGHV1-58A0A0C4DH39 117 aa5.45□□□□□ -1.54
VPS13A-202ENST00000357409 C3orf22Q8N5N4 141 aa5.45□□□□□ -1.54
VPS13A-202ENST00000357409 C7orf33Q8WU49 177 aa5.45□□□□□ -1.54
VPS13A-202ENST00000357409 PLAC8L1A1L4L8 177 aa5.45□□□□□ -1.54
VPS13A-202ENST00000357409 NUPR2A6NF83 97 aa5.45□□□□□ -1.54
VPS13A-202ENST00000357409 FAM236DA0A1B0GTK5 79 aa5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 171.5 ms