RNA–Protein interactions for RNA: ENST00000349124.2

PTP4A3-202, Transcript of protein tyrosine phosphatase type IVA, member 3, humanhuman

TSL 1 (best) BASIC

Gene PTP4A3, Length 2,710 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A3-202ENST00000349124 IGHV1OR15-1A0A075B7D0 117 aa13.36□□□□□ -0.27
PTP4A3-202ENST00000349124 SNRPD3P62318 126 aaKnown RBP13.36□□□□□ -0.27
PTP4A3-202ENST00000349124 SMAGPQ0VAQ4 97 aa13.36□□□□□ -0.27
PTP4A3-202ENST00000349124 TIMM17AQ99595 171 aa13.36□□□□□ -0.27
PTP4A3-202ENST00000349124 PTH2Q96A98 100 aa13.35□□□□□ -0.27
PTP4A3-202ENST00000349124 TMEM141Q96I45 108 aa13.35□□□□□ -0.27
PTP4A3-202ENST00000349124 AMELXQ99217 191 aa13.35□□□□□ -0.27
PTP4A3-202ENST00000349124 LRRK2Q5S007 2527 aa13.35□□□□□ -0.27
PTP4A3-202ENST00000349124 ANKRD17O75179 2603 aaKnown RBP13.35□□□□□ -0.27
PTP4A3-202ENST00000349124 RBMY1A1P0DJD3 496 aaKnown RBP13.35□□□□□ -0.27
PTP4A3-202ENST00000349124 RBMY1CP0DJD4 496 aa13.35□□□□□ -0.27
PTP4A3-202ENST00000349124 HERVK_113P61574 105 aa13.35□□□□□ -0.27
PTP4A3-202ENST00000349124 RBMY1FQ15415 496 aaKnown RBP13.35□□□□□ -0.27
PTP4A3-202ENST00000349124 ABCA12Q86UK0 2595 aa13.35□□□□□ -0.27
PTP4A3-202ENST00000349124 TLN2Q9Y4G6 2542 aa13.35□□□□□ -0.27
PTP4A3-202ENST00000349124 GAGE12HA6NDE8 117 aa13.34□□□□□ -0.27
PTP4A3-202ENST00000349124 TRBV6-5A0A0K0K1A5 114 aa13.34□□□□□ -0.27
PTP4A3-202ENST00000349124 KNCNA6PVL3 124 aa13.34□□□□□ -0.27
PTP4A3-202ENST00000349124 CFC1BP0CG36 223 aa13.34□□□□□ -0.27
PTP4A3-202ENST00000349124 CFC1P0CG37 223 aa13.34□□□□□ -0.27
PTP4A3-202ENST00000349124 C18orf65Q6ZTR6 163 aa13.34□□□□□ -0.27
PTP4A3-202ENST00000349124 NDUFA11Q86Y39 141 aa13.34□□□□□ -0.27
PTP4A3-202ENST00000349124 TEX15Q9BXT5 2789 aa13.34□□□□□ -0.27
PTP4A3-202ENST00000349124 ZNF418Q8TF45 676 aaPredicted RBP13.33□□□□□ -0.27
PTP4A3-202ENST00000349124 J3QQQ9 107 aa13.33□□□□□ -0.28
PTP4A3-202ENST00000349124 IGHV3-30P01768 117 aa13.33□□□□□ -0.28
PTP4A3-202ENST00000349124 IGHV3-30-5P0DP03 117 aa13.33□□□□□ -0.28
PTP4A3-202ENST00000349124 DEFB136Q30KP8 78 aa13.33□□□□□ -0.28
PTP4A3-202ENST00000349124 A6NJY4 79 aa13.33□□□□□ -0.28
PTP4A3-202ENST00000349124 CEMP1Q6PRD7 247 aaPredicted RBP13.33□□□□□ -0.28
PTP4A3-202ENST00000349124 A0A0J9YXV3 536 aa13.32□□□□□ -0.28
PTP4A3-202ENST00000349124 PAPPA-AS1Q5QFB9 102 aa13.32□□□□□ -0.28
PTP4A3-202ENST00000349124 HOXD3P31249 432 aaPredicted RBP13.32□□□□□ -0.28
PTP4A3-202ENST00000349124 SAMD13Q5VXD3 122 aa13.32□□□□□ -0.28
PTP4A3-202ENST00000349124 SLC25A29Q8N8R3 303 aa13.32□□□□□ -0.28
PTP4A3-202ENST00000349124 SYT8Q8NBV8 401 aa13.32□□□□□ -0.28
PTP4A3-202ENST00000349124 SIGMAR1Q99720 223 aa13.32□□□□□ -0.28
PTP4A3-202ENST00000349124 RNASE13Q5GAN3 156 aaKnown RBP13.31□□□□□ -0.28
PTP4A3-202ENST00000349124 CFAP126Q5VTH2 177 aa13.31□□□□□ -0.28
PTP4A3-202ENST00000349124 NFE4Q86UQ8 179 aa13.31□□□□□ -0.28
PTP4A3-202ENST00000349124 DLX4Q92988 240 aaPredicted RBP13.3□□□□□ -0.28
PTP4A3-202ENST00000349124 DUX3Q96PT4 197 aa13.3□□□□□ -0.28
PTP4A3-202ENST00000349124 BEX4Q9NWD9 120 aaPredicted RBP13.3□□□□□ -0.28
PTP4A3-202ENST00000349124 NOTCH3Q9UM47 2321 aa13.3□□□□□ -0.28
PTP4A3-202ENST00000349124 ADARB2-AS1A8MUL3 147 aa13.3□□□□□ -0.28
PTP4A3-202ENST00000349124 EIF4EBP3O60516 100 aaPredicted RBP13.3□□□□□ -0.28
PTP4A3-202ENST00000349124 C20orf203Q8NBC4 194 aa13.3□□□□□ -0.28
PTP4A3-202ENST00000349124 LGALS3P17931 250 aaKnown RBP13.29□□□□□ -0.28
PTP4A3-202ENST00000349124 TRPT1Q86TN4 253 aaKnown RBP13.29□□□□□ -0.28
PTP4A3-202ENST00000349124 RAX2Q96IS3 184 aa13.29□□□□□ -0.28
PTP4A3-202ENST00000349124 TCL1BO95988 128 aa13.28□□□□□ -0.28
PTP4A3-202ENST00000349124 SLURP1P55000 103 aa13.28□□□□□ -0.28
PTP4A3-202ENST00000349124 UBE2D3P61077 147 aa13.28□□□□□ -0.28
PTP4A3-202ENST00000349124 UBE2D2P62837 147 aa13.28□□□□□ -0.28
PTP4A3-202ENST00000349124 TCTEX1D4Q5JR98 221 aa13.28□□□□□ -0.28
PTP4A3-202ENST00000349124 ODF3Q96PU9 254 aa13.28□□□□□ -0.28
PTP4A3-202ENST00000349124 ZNF462Q96JM2 2506 aa13.28□□□□□ -0.28
PTP4A3-202ENST00000349124 ZNF22P17026 224 aaPredicted RBP13.28□□□□□ -0.28
PTP4A3-202ENST00000349124 NAV2Q8IVL1 2488 aa13.28□□□□□ -0.28
PTP4A3-202ENST00000349124 IGLV4-3A0A075B6K6 122 aa13.27□□□□□ -0.28
PTP4A3-202ENST00000349124 TMEM223A0PJW6 202 aa13.27□□□□□ -0.28
PTP4A3-202ENST00000349124 NSUN5P1Q3KNT7 163 aa13.27□□□□□ -0.28
PTP4A3-202ENST00000349124 H7C2G1 150 aa13.27□□□□□ -0.29
PTP4A3-202ENST00000349124 I3L3M4 83 aa13.27□□□□□ -0.29
PTP4A3-202ENST00000349124 J3QR89 54 aa13.27□□□□□ -0.29
PTP4A3-202ENST00000349124 DEFB131AP59861 70 aa13.27□□□□□ -0.29
PTP4A3-202ENST00000349124 Q6ZSN1 163 aa13.27□□□□□ -0.29
PTP4A3-202ENST00000349124 LINC01356Q8N9X3 169 aa13.27□□□□□ -0.29
PTP4A3-202ENST00000349124 FAM104AQ969W3 186 aa13.27□□□□□ -0.29
PTP4A3-202ENST00000349124 TRAV2A0A0B4J234 112 aa13.26□□□□□ -0.29
PTP4A3-202ENST00000349124 A4D1N5 150 aa13.26□□□□□ -0.29
PTP4A3-202ENST00000349124 SPXQ9BT56 116 aa13.26□□□□□ -0.29
PTP4A3-202ENST00000349124 VCX2Q9H322 139 aa13.26□□□□□ -0.29
PTP4A3-202ENST00000349124 SONP18583 2426 aaKnown RBP13.26□□□□□ -0.29
PTP4A3-202ENST00000349124 FOXI1Q12951 378 aa13.26□□□□□ -0.29
PTP4A3-202ENST00000349124 RHOHQ15669 191 aa13.26□□□□□ -0.29
PTP4A3-202ENST00000349124 ZNF469Q96JG9 3925 aaPredicted RBP13.26□□□□□ -0.29
PTP4A3-202ENST00000349124 EPG5Q9HCE0 2579 aa13.25□□□□□ -0.29
PTP4A3-202ENST00000349124 RBMY1BA6NDE4 496 aaKnown RBP13.25□□□□□ -0.29
PTP4A3-202ENST00000349124 RBMY1EA6NEQ0 496 aaKnown RBP13.25□□□□□ -0.29
PTP4A3-202ENST00000349124 RHODO00212 210 aa13.25□□□□□ -0.29
PTP4A3-202ENST00000349124 RBMY1DP0C7P1 496 aaKnown RBP13.25□□□□□ -0.29
PTP4A3-202ENST00000349124 SETD2Q9BYW2 2564 aaPredicted RBP13.25□□□□□ -0.29
PTP4A3-202ENST00000349124 NF1P21359 2839 aa13.25□□□□□ -0.29
PTP4A3-202ENST00000349124 C10orf126Q8N4M7 172 aa13.25□□□□□ -0.29
PTP4A3-202ENST00000349124 ZNF702PQ9H963 129 aa13.25□□□□□ -0.29
PTP4A3-202ENST00000349124 A0A096LNT2 108 aa13.24□□□□□ -0.29
PTP4A3-202ENST00000349124 SCGB1C2P0DMR2 95 aa13.24□□□□□ -0.29
PTP4A3-202ENST00000349124 MUSTN1Q8IVN3 82 aa13.24□□□□□ -0.29
PTP4A3-202ENST00000349124 SPATA25Q9BR10 227 aa13.24□□□□□ -0.29
PTP4A3-202ENST00000349124 C2CD3Q4AC94 2353 aa13.24□□□□□ -0.29
PTP4A3-202ENST00000349124 CHD6Q8TD26 2715 aa13.24□□□□□ -0.29
PTP4A3-202ENST00000349124 TRAV8-3A0A0A6YYJ7 113 aa13.24□□□□□ -0.29
PTP4A3-202ENST00000349124 A8MZ25 164 aa13.24□□□□□ -0.29
PTP4A3-202ENST00000349124 PRO1854Q9UHT4 67 aa13.24□□□□□ -0.29
PTP4A3-202ENST00000349124 NACAE9PAV3 2078 aa13.23□□□□□ -0.29
PTP4A3-202ENST00000349124 WNK1Q9H4A3 2382 aa13.23□□□□□ -0.29
PTP4A3-202ENST00000349124 LEPROTO15243 131 aa13.23□□□□□ -0.29
PTP4A3-202ENST00000349124 GATA3P23771 443 aa13.23□□□□□ -0.29
PTP4A3-202ENST00000349124 FHL3Q13643 280 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms