RNA–Protein interactions for RNA: ENST00000348987.4

SCARF1-202, Transcript of scavenger receptor class F member 1, humanhuman

TSL 1 (best) BASIC

Gene SCARF1, Length 2,619 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-202ENST00000348987 TMEM141Q96I45 108 aa13.96□□□□□ -0.17
SCARF1-202ENST00000348987 OPRPNQ99935 248 aaPredicted RBP13.96□□□□□ -0.17
SCARF1-202ENST00000348987 PRORYQ9H606 182 aa13.96□□□□□ -0.17
SCARF1-202ENST00000348987 TRBV10-2A0A0K0K1G8 114 aa13.95□□□□□ -0.18
SCARF1-202ENST00000348987 RNASE3P12724 160 aaKnown RBP13.95□□□□□ -0.18
SCARF1-202ENST00000348987 RNASE4P34096 147 aaKnown RBP13.95□□□□□ -0.18
SCARF1-202ENST00000348987 JPT2Q9H910 190 aa13.95□□□□□ -0.18
SCARF1-202ENST00000348987 C3orf56Q8N813 242 aa13.95□□□□□ -0.18
SCARF1-202ENST00000348987 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.95□□□□□ -0.183e-6■□□□□ 10.1
SCARF1-202ENST00000348987 POLQO75417 2590 aa13.95□□□□□ -0.18
SCARF1-202ENST00000348987 LGALS9O00182 355 aa13.94□□□□□ -0.18
SCARF1-202ENST00000348987 TRIAP1O43715 76 aa13.94□□□□□ -0.18
SCARF1-202ENST00000348987 POLR2KP53803 58 aaKnown RBP13.94□□□□□ -0.18
SCARF1-202ENST00000348987 TIMM17AQ99595 171 aa13.94□□□□□ -0.18
SCARF1-202ENST00000348987 BRI3O95415 125 aa13.94□□□□□ -0.18
SCARF1-202ENST00000348987 LINC00315P59091 139 aa13.94□□□□□ -0.18
SCARF1-202ENST00000348987 NPFFO15130 113 aa13.94□□□□□ -0.18
SCARF1-202ENST00000348987 CHCHD5Q9BSY4 110 aa13.94□□□□□ -0.18
SCARF1-202ENST00000348987 LENEPQ9Y5L5 61 aa13.94□□□□□ -0.18
SCARF1-202ENST00000348987 C5orf56Q8N8D9 126 aa13.93□□□□□ -0.18
SCARF1-202ENST00000348987 MUC4Q99102 2169 aa13.93□□□□□ -0.18
SCARF1-202ENST00000348987 C2orf82Q6UX34 121 aa13.93□□□□□ -0.18
SCARF1-202ENST00000348987 BRD3OSQ6XYD6 125 aa13.93□□□□□ -0.18
SCARF1-202ENST00000348987 LINC00477Q96M19 166 aa13.93□□□□□ -0.18
SCARF1-202ENST00000348987 ZNF580Q9UK33 172 aa13.93□□□□□ -0.18
SCARF1-202ENST00000348987 KIF25-AS1Q9Y6Z4 181 aa13.93□□□□□ -0.18
SCARF1-202ENST00000348987 VCYO14598 125 aa13.92□□□□□ -0.18
SCARF1-202ENST00000348987 A0A087WWL8 130 aa13.92□□□□□ -0.18
SCARF1-202ENST00000348987 TMEM223A0PJW6 202 aa13.92□□□□□ -0.18
SCARF1-202ENST00000348987 SDHAF1A6NFY7 115 aa13.92□□□□□ -0.18
SCARF1-202ENST00000348987 F5H697 171 aa13.92□□□□□ -0.18
SCARF1-202ENST00000348987 LEPROTO15243 131 aa13.92□□□□□ -0.18
SCARF1-202ENST00000348987 TRBV12-3P01733 135 aa13.92□□□□□ -0.18
SCARF1-202ENST00000348987 ZNF56Q15929 161 aa13.92□□□□□ -0.18
SCARF1-202ENST00000348987 SUMO4Q6EEV6 95 aa13.92□□□□□ -0.18
SCARF1-202ENST00000348987 EEF1AKMT3Q96AZ1 226 aa13.92□□□□□ -0.18
SCARF1-202ENST00000348987 IGHV4OR15-8A0A075B7B6 117 aa13.91□□□□□ -0.18
SCARF1-202ENST00000348987 A0A087WW49 117 aa13.91□□□□□ -0.18
SCARF1-202ENST00000348987 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.91□□□□□ -0.18
SCARF1-202ENST00000348987 KLK9Q2XQG4 91 aa13.91□□□□□ -0.18
SCARF1-202ENST00000348987 MDFICQ9P1T7 246 aa13.91□□□□□ -0.18
SCARF1-202ENST00000348987 KLK9Q9UKQ9 250 aa13.91□□□□□ -0.18
SCARF1-202ENST00000348987 F6UB75 175 aa13.91□□□□□ -0.18
SCARF1-202ENST00000348987 POM121L12Q8N7R1 296 aa13.91□□□□□ -0.18
SCARF1-202ENST00000348987 U3KQE9 123 aa13.91□□□□□ -0.18
SCARF1-202ENST00000348987 CSPG4Q6UVK1 2322 aa13.9□□□□□ -0.18
SCARF1-202ENST00000348987 TRBV30A0A0K0K1B3 111 aa13.9□□□□□ -0.18
SCARF1-202ENST00000348987 H7C423 109 aa13.9□□□□□ -0.18
SCARF1-202ENST00000348987 UNQ9165/PRO28630Q6UXU0 137 aa13.9□□□□□ -0.18
SCARF1-202ENST00000348987 C9orf139Q6ZV77 190 aa13.9□□□□□ -0.18
SCARF1-202ENST00000348987 DUX3Q96PT4 197 aa13.9□□□□□ -0.18
SCARF1-202ENST00000348987 FAM208BQ5VWN6 2430 aa13.9□□□□□ -0.18
SCARF1-202ENST00000348987 LINC01600Q96MT4 127 aa13.9□□□□□ -0.18
SCARF1-202ENST00000348987 ZNF256Q9Y2P7 627 aaPredicted RBP13.9□□□□□ -0.18
SCARF1-202ENST00000348987 ADARB2-AS1A8MUL3 147 aa13.89□□□□□ -0.19
SCARF1-202ENST00000348987 USP9YO00507 2555 aaPredicted RBP13.89□□□□□ -0.19
SCARF1-202ENST00000348987 TNFRSF18Q9Y5U5 241 aa13.89□□□□□ -0.19
SCARF1-202ENST00000348987 TRBV7-1A0A0A6YYK4 115 aa13.88□□□□□ -0.19
SCARF1-202ENST00000348987 MED14OSP0DP75 135 aa13.88□□□□□ -0.19
SCARF1-202ENST00000348987 ZANQ9Y493 2812 aa13.88□□□□□ -0.19
SCARF1-202ENST00000348987 TRAV41A0A0B4J266 112 aa13.87□□□□□ -0.19
SCARF1-202ENST00000348987 M0R2P5 195 aa13.87□□□□□ -0.19
SCARF1-202ENST00000348987 PRSS2P07478 247 aa13.87□□□□□ -0.19
SCARF1-202ENST00000348987 TMEM95Q3KNT9 176 aa13.87□□□□□ -0.19
SCARF1-202ENST00000348987 A0A0J9YXY3 114 aa13.87□□□□□ -0.19
SCARF1-202ENST00000348987 ZNF22P17026 224 aaPredicted RBP13.87□□□□□ -0.19
SCARF1-202ENST00000348987 Q6ZSV7 163 aa13.86□□□□□ -0.19
SCARF1-202ENST00000348987 IGKV3-7A0A075B6H7 116 aa13.86□□□□□ -0.19
SCARF1-202ENST00000348987 FAM74A4Q5TZK3 123 aa13.86□□□□□ -0.19
SCARF1-202ENST00000348987 CLEC2BQ92478 149 aa13.86□□□□□ -0.19
SCARF1-202ENST00000348987 SPANXA1Q9NS26 97 aa13.86□□□□□ -0.19
SCARF1-202ENST00000348987 A0A0J9YXV3 536 aa13.85□□□□□ -0.19
SCARF1-202ENST00000348987 ICOSQ9Y6W8 199 aa13.85□□□□□ -0.19
SCARF1-202ENST00000348987 DOPEY1Q5JWR5 2465 aa13.85□□□□□ -0.19
SCARF1-202ENST00000348987 TRBV27A0A0K0K1C4 114 aa13.85□□□□□ -0.19
SCARF1-202ENST00000348987 OVOL1O14753 267 aa13.85□□□□□ -0.19
SCARF1-202ENST00000348987 LY6EQ16553 131 aa13.85□□□□□ -0.19
SCARF1-202ENST00000348987 IGHV3-11P01762 117 aa13.84□□□□□ -0.19
SCARF1-202ENST00000348987 RPL11P62913 178 aaKnown RBP13.84□□□□□ -0.19
SCARF1-202ENST00000348987 C19orf54Q5BKX5 351 aa13.84□□□□□ -0.19
SCARF1-202ENST00000348987 LRRK2Q5S007 2527 aa13.84□□□□□ -0.19
SCARF1-202ENST00000348987 NXPH4O95158 308 aa13.84□□□□□ -0.19
SCARF1-202ENST00000348987 PPDPFQ9H3Y8 114 aa13.84□□□□□ -0.19
SCARF1-202ENST00000348987 SPXQ9BT56 116 aa13.83□□□□□ -0.19
SCARF1-202ENST00000348987 MOB4Q9Y3A3 225 aa13.83□□□□□ -0.19
SCARF1-202ENST00000348987 NPC2P61916 151 aa13.83□□□□□ -0.2
SCARF1-202ENST00000348987 MRPL23Q16540 153 aaKnown RBP13.83□□□□□ -0.2
SCARF1-202ENST00000348987 NRGNQ92686 78 aa13.83□□□□□ -0.2
SCARF1-202ENST00000348987 FAM19A4Q96LR4 140 aa13.83□□□□□ -0.2
SCARF1-202ENST00000348987 LINC01587Q99440 93 aa13.83□□□□□ -0.2
SCARF1-202ENST00000348987 IGHV4-61A0A0C4DH41 118 aa13.82□□□□□ -0.2
SCARF1-202ENST00000348987 IGHV4-38-2P0DP08 117 aa13.82□□□□□ -0.2
SCARF1-202ENST00000348987 VPREB3Q9UKI3 123 aa13.82□□□□□ -0.2
SCARF1-202ENST00000348987 ZNF462Q96JM2 2506 aa13.82□□□□□ -0.2
SCARF1-202ENST00000348987 H3BT86 120 aa13.82□□□□□ -0.2
SCARF1-202ENST00000348987 ADAMTSL4-AS1Q5T5F5 129 aa13.82□□□□□ -0.2
SCARF1-202ENST00000348987 LITAFQ99732 161 aa13.82□□□□□ -0.2
SCARF1-202ENST00000348987 SOCS3O14543 225 aa13.81□□□□□ -0.2
SCARF1-202ENST00000348987 IGHV1-69P01742 117 aa13.81□□□□□ -0.2
SCARF1-202ENST00000348987 IGHV3-30-3P0DP02 117 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms