RNA–Protein interactions for RNA: ENST00000343060.4

HOXA1-201, Transcript of homeobox A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA1, Length 2,517 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1-201ENST00000343060 PYGO1Q9Y3Y4 419 aa7.16□□□□□ -1.26
HOXA1-201ENST00000343060 CACNA1HO95180 2353 aa7.15□□□□□ -1.26
HOXA1-201ENST00000343060 MIAQ16674 131 aa7.15□□□□□ -1.26
HOXA1-201ENST00000343060 SMIM20Q8N5G0 67 aa7.15□□□□□ -1.26
HOXA1-201ENST00000343060 FAM104AQ969W3 186 aa7.15□□□□□ -1.26
HOXA1-201ENST00000343060 EDA2RQ9HAV5 297 aa7.15□□□□□ -1.26
HOXA1-201ENST00000343060 IGHV3-64A0A075B6Q5 118 aa7.15□□□□□ -1.27
HOXA1-201ENST00000343060 NPFFO15130 113 aa7.15□□□□□ -1.27
HOXA1-201ENST00000343060 HERV-K104P63124 156 aa7.15□□□□□ -1.27
HOXA1-201ENST00000343060 SHISA2Q6UWI4 295 aa7.15□□□□□ -1.27
HOXA1-201ENST00000343060 USMG5Q96IX5 58 aa7.15□□□□□ -1.27
HOXA1-201ENST00000343060 TIMM21Q9BVV7 248 aa7.15□□□□□ -1.27
HOXA1-201ENST00000343060 BEX4Q9NWD9 120 aaPredicted RBP7.15□□□□□ -1.27
HOXA1-201ENST00000343060 DCHS2Q6V1P9 2916 aa7.14□□□□□ -1.27
HOXA1-201ENST00000343060 I3L3M4 83 aa7.14□□□□□ -1.27
HOXA1-201ENST00000343060 COX6CP09669 75 aa7.14□□□□□ -1.27
HOXA1-201ENST00000343060 ZNF56Q15929 161 aa7.14□□□□□ -1.27
HOXA1-201ENST00000343060 TMEM61Q8N0U2 210 aa7.14□□□□□ -1.27
HOXA1-201ENST00000343060 CACNA1BQ00975 2339 aa7.14□□□□□ -1.27
HOXA1-201ENST00000343060 IGHV1-58A0A0C4DH39 117 aa7.13□□□□□ -1.27
HOXA1-201ENST00000343060 TIMM17BO60830 172 aa7.13□□□□□ -1.27
HOXA1-201ENST00000343060 ADAMTSL4-AS1Q5T5F5 129 aa7.13□□□□□ -1.27
HOXA1-201ENST00000343060 RHPN1-AS1Q9BWJ2 59 aa7.13□□□□□ -1.27
HOXA1-201ENST00000343060 FAM74A4Q5TZK3 123 aa7.13□□□□□ -1.27
HOXA1-201ENST00000343060 LINC01587Q99440 93 aa7.13□□□□□ -1.27
HOXA1-201ENST00000343060 TMEM126AQ9H061 195 aa7.13□□□□□ -1.27
HOXA1-201ENST00000343060 BDP1A6H8Y1 2624 aa7.13□□□□□ -1.27
HOXA1-201ENST00000343060 ANKRD11Q6UB99 2663 aaPredicted RBP7.13□□□□□ -1.27
HOXA1-201ENST00000343060 ACACAQ13085 2346 aa7.13□□□□□ -1.27
HOXA1-201ENST00000343060 MEIG1Q5JSS6 88 aa7.12□□□□□ -1.27
HOXA1-201ENST00000343060 DCANP1Q8TF63 244 aa7.12□□□□□ -1.27
HOXA1-201ENST00000343060 IMUPQ9GZP8 106 aa7.12□□□□□ -1.27
HOXA1-201ENST00000343060 SPTBN2O15020 2390 aa7.12□□□□□ -1.27
HOXA1-201ENST00000343060 TRAV12-3A0A0B4J271 114 aa7.12□□□□□ -1.27
HOXA1-201ENST00000343060 ID1P41134 155 aa7.12□□□□□ -1.27
HOXA1-201ENST00000343060 TMEM219Q86XT9 240 aa7.12□□□□□ -1.27
HOXA1-201ENST00000343060 DAZ1Q9NQZ3 744 aaKnown RBP7.12□□□□□ -1.27
HOXA1-201ENST00000343060 NDUFA12Q9UI09 145 aa7.12□□□□□ -1.27
HOXA1-201ENST00000343060 TRGV11A0A075B6L2 103 aa7.11□□□□□ -1.27
HOXA1-201ENST00000343060 RPL11P62913 178 aaKnown RBP7.11□□□□□ -1.27
HOXA1-201ENST00000343060 CLEC2BQ92478 149 aa7.11□□□□□ -1.27
HOXA1-201ENST00000343060 VSIG2Q96IQ7 327 aa7.11□□□□□ -1.27
HOXA1-201ENST00000343060 YAE1D1Q9NRH1 226 aa7.11□□□□□ -1.27
HOXA1-201ENST00000343060 LINC00527Q9UJ94 153 aa7.11□□□□□ -1.27
HOXA1-201ENST00000343060 EP300Q09472 2414 aaPredicted RBP7.11□□□□□ -1.27
HOXA1-201ENST00000343060 TINCRA0A1B0GVN0 87 aa7.11□□□□□ -1.27
HOXA1-201ENST00000343060 ADARB2-AS1A8MUL3 147 aa7.11□□□□□ -1.27
HOXA1-201ENST00000343060 ACYP1P07311 99 aa7.11□□□□□ -1.27
HOXA1-201ENST00000343060 CD28P10747 220 aa7.11□□□□□ -1.27
HOXA1-201ENST00000343060 LY6DQ14210 128 aa7.11□□□□□ -1.27
HOXA1-201ENST00000343060 TMEM101Q96IK0 257 aa7.11□□□□□ -1.27
HOXA1-201ENST00000343060 TNFRSF18Q9Y5U5 241 aa7.11□□□□□ -1.27
HOXA1-201ENST00000343060 PRRC2AP48634 2157 aaKnown RBP7.11□□□□□ -1.27
HOXA1-201ENST00000343060 TRAV8-3A0A0A6YYJ7 113 aa7.1□□□□□ -1.27
HOXA1-201ENST00000343060 K7EMT4 169 aa7.1□□□□□ -1.27
HOXA1-201ENST00000343060 LMO4P61968 165 aa7.1□□□□□ -1.27
HOXA1-201ENST00000343060 SPXQ9BT56 116 aa7.1□□□□□ -1.27
HOXA1-201ENST00000343060 DMXL1Q9Y485 3027 aa7.1□□□□□ -1.27
HOXA1-201ENST00000343060 LAMA5O15230 3695 aa7.1□□□□□ -1.27
HOXA1-201ENST00000343060 RNF152Q8N8N0 203 aa7.1□□□□□ -1.27
HOXA1-201ENST00000343060 DUX3Q96PT4 197 aa7.1□□□□□ -1.27
HOXA1-201ENST00000343060 IGKV3-7A0A075B6H7 116 aa7.09□□□□□ -1.27
HOXA1-201ENST00000343060 IGHV1OR15-1A0A075B7D0 117 aa7.09□□□□□ -1.27
HOXA1-201ENST00000343060 IGHG2P01859 326 aa7.09□□□□□ -1.27
HOXA1-201ENST00000343060 PRSS2P07478 247 aa7.09□□□□□ -1.27
HOXA1-201ENST00000343060 CDSNQ15517 529 aa7.09□□□□□ -1.27
HOXA1-201ENST00000343060 SDIM1Q6ZPB5 146 aa7.09□□□□□ -1.27
HOXA1-201ENST00000343060 Q6ZSV7 163 aa7.09□□□□□ -1.27
HOXA1-201ENST00000343060 CHCHD5Q9BSY4 110 aa7.09□□□□□ -1.27
HOXA1-201ENST00000343060 ATMQ13315 3056 aa7.09□□□□□ -1.27
HOXA1-201ENST00000343060 IGHV3-11P01762 117 aa7.08□□□□□ -1.28
HOXA1-201ENST00000343060 ADORA2A-AS1P86434 159 aa7.08□□□□□ -1.28
HOXA1-201ENST00000343060 HRNRQ86YZ3 2850 aaPredicted RBP7.08□□□□□ -1.28
HOXA1-201ENST00000343060 NDUFA1O15239 70 aa7.07□□□□□ -1.28
HOXA1-201ENST00000343060 IGLV1-40P01703 118 aa7.07□□□□□ -1.28
HOXA1-201ENST00000343060 TMEM95Q3KNT9 176 aa7.07□□□□□ -1.28
HOXA1-201ENST00000343060 LRBAP50851 2863 aa7.07□□□□□ -1.28
HOXA1-201ENST00000343060 AKAP13Q12802 2813 aa7.07□□□□□ -1.28
HOXA1-201ENST00000343060 IGLV5-45A0A087WSX0 123 aa7.07□□□□□ -1.28
HOXA1-201ENST00000343060 CCL21O00585 134 aa7.07□□□□□ -1.28
HOXA1-201ENST00000343060 EDN2P20800 178 aa7.07□□□□□ -1.28
HOXA1-201ENST00000343060 CITED2Q99967 270 aaPredicted RBP7.07□□□□□ -1.28
HOXA1-201ENST00000343060 FAM236AA0A1B0GUQ0 79 aa7.06□□□□□ -1.28
HOXA1-201ENST00000343060 FAM236BA0A1B0GV22 79 aa7.06□□□□□ -1.28
HOXA1-201ENST00000343060 ATP5G1P05496 136 aa7.06□□□□□ -1.28
HOXA1-201ENST00000343060 CHCHD7Q9BUK0 85 aa7.06□□□□□ -1.28
HOXA1-201ENST00000343060 VPREB3Q9UKI3 123 aa7.06□□□□□ -1.28
HOXA1-201ENST00000343060 UBE2D4Q9Y2X8 147 aa7.06□□□□□ -1.28
HOXA1-201ENST00000343060 TRAV12-2A0A075B6T6 113 aa7.06□□□□□ -1.28
HOXA1-201ENST00000343060 A0A1W2PPR1 153 aa7.06□□□□□ -1.28
HOXA1-201ENST00000343060 COX7A2LO14548 114 aa7.06□□□□□ -1.28
HOXA1-201ENST00000343060 CFHR3Q02985 330 aa7.06□□□□□ -1.28
HOXA1-201ENST00000343060 LINC00643Q86TS7 51 aa7.06□□□□□ -1.28
HOXA1-201ENST00000343060 MED13LQ71F56 2210 aa7.05□□□□□ -1.28
HOXA1-201ENST00000343060 PF4V1P10720 104 aa7.05□□□□□ -1.28
HOXA1-201ENST00000343060 SMCR5Q8TEV8 140 aa7.05□□□□□ -1.28
HOXA1-201ENST00000343060 A6NDX4 124 aa7.05□□□□□ -1.28
HOXA1-201ENST00000343060 A8MZ25 164 aa7.05□□□□□ -1.28
HOXA1-201ENST00000343060 K7EQG2 157 aa7.05□□□□□ -1.28
HOXA1-201ENST00000343060 CEMP1Q6PRD7 247 aaPredicted RBP7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms