RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 LINC01545Q5VT33 79 aa9.64□□□□□ -0.87
HMGB1-202ENST00000339872 Q6ZTI0 123 aa9.64□□□□□ -0.87
HMGB1-202ENST00000339872 NDUFAF3Q9BU61 184 aa9.64□□□□□ -0.87
HMGB1-202ENST00000339872 NOP10Q9NPE3 64 aaKnown RBP9.64□□□□□ -0.87
HMGB1-202ENST00000339872 PLAC8L1A1L4L8 177 aa9.64□□□□□ -0.87
HMGB1-202ENST00000339872 VCYO14598 125 aa9.64□□□□□ -0.87
HMGB1-202ENST00000339872 P0DMU3 169 aa9.64□□□□□ -0.87
HMGB1-202ENST00000339872 FAM231AP0DMU4 169 aa9.64□□□□□ -0.87
HMGB1-202ENST00000339872 FAM231CP0DMU5 169 aa9.64□□□□□ -0.87
HMGB1-202ENST00000339872 MAJINQ3KP22 176 aa9.64□□□□□ -0.87
HMGB1-202ENST00000339872 SPATA45Q537H7 98 aa9.64□□□□□ -0.87
HMGB1-202ENST00000339872 KIR2DL4Q99706 377 aa9.64□□□□□ -0.87
HMGB1-202ENST00000339872 TRRAPQ9Y4A5 3859 aa9.63□□□□□ -0.87
HMGB1-202ENST00000339872 EDA2RQ9HAV5 297 aa9.63□□□□□ -0.87
HMGB1-202ENST00000339872 TRBV27A0A0K0K1C4 114 aa9.62□□□□□ -0.87
HMGB1-202ENST00000339872 DAZ2Q13117 558 aaKnown RBP9.62□□□□□ -0.87
HMGB1-202ENST00000339872 Q6ZSN1 163 aa9.62□□□□□ -0.87
HMGB1-202ENST00000339872 OR4C5Q8NGB2 326 aa9.62□□□□□ -0.87
HMGB1-202ENST00000339872 DDTP30046 118 aa9.62□□□□□ -0.87
HMGB1-202ENST00000339872 LGALS9BQ3B8N2 356 aa9.62□□□□□ -0.87
HMGB1-202ENST00000339872 TRAV9-2A0A087WT02 112 aa9.61□□□□□ -0.87
HMGB1-202ENST00000339872 ATP5LO75964 103 aa9.61□□□□□ -0.87
HMGB1-202ENST00000339872 OXLD1Q5BKU9 147 aa9.61□□□□□ -0.87
HMGB1-202ENST00000339872 C2orf66Q6UXQ4 117 aa9.61□□□□□ -0.87
HMGB1-202ENST00000339872 ZFP2Q6ZN57 461 aa9.61□□□□□ -0.87
HMGB1-202ENST00000339872 TOMM6Q96B49 74 aa9.61□□□□□ -0.87
HMGB1-202ENST00000339872 LGALS9CQ6DKI2 356 aa9.61□□□□□ -0.87
HMGB1-202ENST00000339872 ZNF479Q96JC4 524 aa9.61□□□□□ -0.87
HMGB1-202ENST00000339872 IGHV3-53P01767 116 aa9.6□□□□□ -0.87
HMGB1-202ENST00000339872 PRSS1P07477 247 aa9.6□□□□□ -0.87
HMGB1-202ENST00000339872 TNFRSF18Q9Y5U5 241 aa9.6□□□□□ -0.87
HMGB1-202ENST00000339872 hDV102S1A0JD36 115 aa9.6□□□□□ -0.87
HMGB1-202ENST00000339872 EMP1P54849 157 aa9.6□□□□□ -0.87
HMGB1-202ENST00000339872 APOC4P55056 127 aa9.6□□□□□ -0.87
HMGB1-202ENST00000339872 SCGB3A1Q96QR1 104 aa9.6□□□□□ -0.87
HMGB1-202ENST00000339872 Q9UF83 564 aa9.6□□□□□ -0.87
HMGB1-202ENST00000339872 TRAV4A0A0B4J268 109 aa9.59□□□□□ -0.87
HMGB1-202ENST00000339872 GAGE12BA1L429 117 aa9.59□□□□□ -0.87
HMGB1-202ENST00000339872 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.59□□□□□ -0.87
HMGB1-202ENST00000339872 I3L3M4 83 aa9.59□□□□□ -0.87
HMGB1-202ENST00000339872 GAGE7O76087 117 aa9.59□□□□□ -0.87
HMGB1-202ENST00000339872 GAGE12FP0CL80 117 aa9.59□□□□□ -0.87
HMGB1-202ENST00000339872 GAGE12GP0CL81 117 aa9.59□□□□□ -0.87
HMGB1-202ENST00000339872 GAGE12IP0CL82 117 aa9.59□□□□□ -0.87
HMGB1-202ENST00000339872 KIR2DL5BQ8NHK3 375 aa9.59□□□□□ -0.87
HMGB1-202ENST00000339872 TRGV2A0A075B6R0 118 aa9.59□□□□□ -0.87
HMGB1-202ENST00000339872 DEFB135Q30KP9 77 aa9.59□□□□□ -0.87
HMGB1-202ENST00000339872 NEXN-AS1Q8NBZ9 246 aa9.59□□□□□ -0.87
HMGB1-202ENST00000339872 OVOL2Q9BRP0 275 aa9.59□□□□□ -0.87
HMGB1-202ENST00000339872 CYSLTR1Q9Y271 337 aa9.59□□□□□ -0.87
HMGB1-202ENST00000339872 TP53TG1Q9Y2A0 90 aa9.59□□□□□ -0.87
HMGB1-202ENST00000339872 TSHBP01222 138 aa9.58□□□□□ -0.88
HMGB1-202ENST00000339872 DKK2Q9UBU2 259 aa9.58□□□□□ -0.88
HMGB1-202ENST00000339872 X6R8D5 127 aa9.58□□□□□ -0.88
HMGB1-202ENST00000339872 HSBP1L1C9JCN9 74 aa9.57□□□□□ -0.88
HMGB1-202ENST00000339872 IGHV4-30-4P0DP06 118 aa9.57□□□□□ -0.88
HMGB1-202ENST00000339872 G0S2P27469 103 aa9.57□□□□□ -0.88
HMGB1-202ENST00000339872 Q6ZN92 141 aa9.57□□□□□ -0.88
HMGB1-202ENST00000339872 RPL39P62891 51 aaKnown RBP9.57□□□□□ -0.88
HMGB1-202ENST00000339872 ODF1Q14990 250 aa9.57□□□□□ -0.88
HMGB1-202ENST00000339872 RHOHQ15669 191 aa9.57□□□□□ -0.88
HMGB1-202ENST00000339872 STAB1Q9NY15 2570 aa9.57□□□□□ -0.88
HMGB1-202ENST00000339872 RIPPLY3P57055 190 aa9.56□□□□□ -0.88
HMGB1-202ENST00000339872 ERASQ7Z444 233 aa9.56□□□□□ -0.88
HMGB1-202ENST00000339872 SMIM9A6NGZ8 99 aa9.56□□□□□ -0.88
HMGB1-202ENST00000339872 KRTAP10-11P60412 298 aa9.56□□□□□ -0.88
HMGB1-202ENST00000339872 DNAJC30Q96LL9 226 aa9.56□□□□□ -0.88
HMGB1-202ENST00000339872 IGLC3P0DOY3 106 aa9.55□□□□□ -0.88
HMGB1-202ENST00000339872 MIEN1Q9BRT3 115 aa9.55□□□□□ -0.88
HMGB1-202ENST00000339872 MAST4O15021 2626 aa9.55□□□□□ -0.88
HMGB1-202ENST00000339872 LINC01549A6NIU2 74 aa9.55□□□□□ -0.88
HMGB1-202ENST00000339872 K7EQD1 137 aa9.55□□□□□ -0.88
HMGB1-202ENST00000339872 DEFA6Q01524 100 aa9.55□□□□□ -0.88
HMGB1-202ENST00000339872 C14orf144Q96I85 54 aa9.55□□□□□ -0.88
HMGB1-202ENST00000339872 PHLDA1Q8WV24 401 aaPredicted RBP9.54□□□□□ -0.88
HMGB1-202ENST00000339872 BAALCQ8WXS3 180 aa9.54□□□□□ -0.88
HMGB1-202ENST00000339872 IGHV3-38A0A0C4DH36 116 aa9.54□□□□□ -0.88
HMGB1-202ENST00000339872 SLC25A29Q8N8R3 303 aa9.54□□□□□ -0.88
HMGB1-202ENST00000339872 A0A087WX48 190 aa9.53□□□□□ -0.88
HMGB1-202ENST00000339872 IGIPA6NJ69 53 aa9.53□□□□□ -0.88
HMGB1-202ENST00000339872 DEFB130BP0DP73 79 aa9.53□□□□□ -0.88
HMGB1-202ENST00000339872 DEFB130AP0DP74 79 aa9.53□□□□□ -0.88
HMGB1-202ENST00000339872 EGFEM1PQ0D2K5 195 aa9.53□□□□□ -0.88
HMGB1-202ENST00000339872 C20orf203Q8NBC4 194 aa9.53□□□□□ -0.88
HMGB1-202ENST00000339872 OR11H2Q8NH07 326 aa9.53□□□□□ -0.88
HMGB1-202ENST00000339872 ZNRF2Q8NHG8 242 aa9.53□□□□□ -0.88
HMGB1-202ENST00000339872 ZMAT4Q9H898 229 aa9.53□□□□□ -0.88
HMGB1-202ENST00000339872 MRPL35Q9NZE8 188 aaKnown RBP9.53□□□□□ -0.88
HMGB1-202ENST00000339872 UQCR10Q9UDW1 63 aa9.53□□□□□ -0.88
HMGB1-202ENST00000339872 TRAV12-1A0A0B4J245 112 aa9.53□□□□□ -0.88
HMGB1-202ENST00000339872 IGKCP01834 107 aa9.53□□□□□ -0.88
HMGB1-202ENST00000339872 TRBV7-3A0A075B6L6 115 aa9.52□□□□□ -0.89
HMGB1-202ENST00000339872 TRGV4A0A0C4DH28 118 aa9.52□□□□□ -0.89
HMGB1-202ENST00000339872 TRBV10-1A0A0K0K1A3 114 aa9.52□□□□□ -0.89
HMGB1-202ENST00000339872 DPM2O94777 84 aa9.52□□□□□ -0.89
HMGB1-202ENST00000339872 RPL36AP83881 106 aaKnown RBP9.52□□□□□ -0.89
HMGB1-202ENST00000339872 STPG4Q8N801 248 aa9.52□□□□□ -0.89
HMGB1-202ENST00000339872 RPL36ALQ969Q0 106 aaKnown RBP9.52□□□□□ -0.89
HMGB1-202ENST00000339872 TIMM17AQ99595 171 aa9.52□□□□□ -0.89
HMGB1-202ENST00000339872 CIDEAO60543 219 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms