RNA–Protein interactions for RNA: ENST00000330687.8

CMTM4-201, Transcript of CKLF like MARVEL transmembrane domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene CMTM4, Length 3,414 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM4-201ENST00000330687 KLRB1Q12918 225 aa15.46■□□□□ 0.07
CMTM4-201ENST00000330687 ZNF876PQ49A33 203 aa15.46■□□□□ 0.07
CMTM4-201ENST00000330687 AMELXQ99217 191 aa15.46■□□□□ 0.07
CMTM4-201ENST00000330687 CUBNO60494 3623 aa15.45■□□□□ 0.06
CMTM4-201ENST00000330687 PPP1R17O96001 155 aa15.45■□□□□ 0.06
CMTM4-201ENST00000330687 RNASE3P12724 160 aaKnown RBP15.45■□□□□ 0.06
CMTM4-201ENST00000330687 AKAP13Q12802 2813 aa15.45■□□□□ 0.06
CMTM4-201ENST00000330687 P0DMU3 169 aa15.45■□□□□ 0.06
CMTM4-201ENST00000330687 FAM231AP0DMU4 169 aa15.45■□□□□ 0.06
CMTM4-201ENST00000330687 FAM231CP0DMU5 169 aa15.45■□□□□ 0.06
CMTM4-201ENST00000330687 TIMM21Q9BVV7 248 aa15.45■□□□□ 0.06
CMTM4-201ENST00000330687 IGF2RP11717 2491 aa15.45■□□□□ 0.06
CMTM4-201ENST00000330687 A0A0B4J2C4 111 aa15.45■□□□□ 0.06
CMTM4-201ENST00000330687 LEPROTO15243 131 aa15.45■□□□□ 0.06
CMTM4-201ENST00000330687 Q6Q795 121 aa15.44■□□□□ 0.06
CMTM4-201ENST00000330687 TMEM141Q96I45 108 aa15.44■□□□□ 0.06
CMTM4-201ENST00000330687 NCOR2Q9Y618 2525 aa15.44■□□□□ 0.06
CMTM4-201ENST00000330687 OTOGLQ3ZCN5 2332 aa15.44■□□□□ 0.06
CMTM4-201ENST00000330687 CSPG4Q6UVK1 2322 aa15.44■□□□□ 0.06
CMTM4-201ENST00000330687 TRAV12-2A0A075B6T6 113 aa15.43■□□□□ 0.06
CMTM4-201ENST00000330687 ADAMTSL4-AS1Q5T5F5 129 aa15.43■□□□□ 0.06
CMTM4-201ENST00000330687 UNQ9165/PRO28630Q6UXU0 137 aa15.43■□□□□ 0.06
CMTM4-201ENST00000330687 IGHV3-30-3P0DP02 117 aa15.43■□□□□ 0.06
CMTM4-201ENST00000330687 CD28P10747 220 aa15.43■□□□□ 0.06
CMTM4-201ENST00000330687 IGHV1-69DA0A0B4J2H0 117 aa15.42■□□□□ 0.06
CMTM4-201ENST00000330687 ZNF883P0CG24 379 aa15.42■□□□□ 0.06
CMTM4-201ENST00000330687 NDUFA12Q9UI09 145 aa15.42■□□□□ 0.06
CMTM4-201ENST00000330687 TMEM223A0PJW6 202 aa15.42■□□□□ 0.06
CMTM4-201ENST00000330687 PRR30Q53SZ7 412 aaPredicted RBP15.42■□□□□ 0.06
CMTM4-201ENST00000330687 LINC01587Q99440 93 aa15.42■□□□□ 0.06
CMTM4-201ENST00000330687 CHD8Q9HCK8 2581 aa15.42■□□□□ 0.06
CMTM4-201ENST00000330687 TRBV12-3P01733 135 aa15.42■□□□□ 0.06
CMTM4-201ENST00000330687 PIP4P1Q86T03 277 aa15.42■□□□□ 0.06
CMTM4-201ENST00000330687 MDFICQ9P1T7 246 aa15.42■□□□□ 0.06
CMTM4-201ENST00000330687 HERVK_113P63121 156 aa15.41■□□□□ 0.06
CMTM4-201ENST00000330687 I3L3M4 83 aa15.41■□□□□ 0.06
CMTM4-201ENST00000330687 SPTBN4Q9H254 2564 aa15.41■□□□□ 0.06
CMTM4-201ENST00000330687 IGFL2Q6UWQ7 119 aa15.4■□□□□ 0.06
CMTM4-201ENST00000330687 Q8N9W7 124 aa15.4■□□□□ 0.06
CMTM4-201ENST00000330687 B9A039 149 aa15.4■□□□□ 0.06
CMTM4-201ENST00000330687 C9orf139Q6ZV77 190 aa15.4■□□□□ 0.06
CMTM4-201ENST00000330687 TIMM17AQ99595 171 aa15.4■□□□□ 0.06
CMTM4-201ENST00000330687 TMEM126AQ9H061 195 aa15.4■□□□□ 0.06
CMTM4-201ENST00000330687 NPFFO15130 113 aa15.39■□□□□ 0.05
CMTM4-201ENST00000330687 POLR2KP53803 58 aaKnown RBP15.39■□□□□ 0.05
CMTM4-201ENST00000330687 CELSR1Q9NYQ6 3014 aa15.39■□□□□ 0.05
CMTM4-201ENST00000330687 KLK9Q9UKQ9 250 aa15.39■□□□□ 0.05
CMTM4-201ENST00000330687 TRBV30A0A0K0K1B3 111 aa15.39■□□□□ 0.05
CMTM4-201ENST00000330687 FAM110DQ8TAY7 271 aaPredicted RBP15.37■□□□□ 0.05
CMTM4-201ENST00000330687 CSDC2Q9Y534 153 aaKnown RBP15.37■□□□□ 0.05
CMTM4-201ENST00000330687 GAGE2AQ6NT46 116 aa15.37■□□□□ 0.05
CMTM4-201ENST00000330687 GRNP28799 593 aaKnown RBP15.36■□□□□ 0.05
CMTM4-201ENST00000330687 H3BT86 120 aa15.35■□□□□ 0.05
CMTM4-201ENST00000330687 NDUFA7O95182 113 aa15.35■□□□□ 0.05
CMTM4-201ENST00000330687 RHOHQ15669 191 aa15.35■□□□□ 0.05
CMTM4-201ENST00000330687 TRAV13-1A0A0B4J241 112 aa15.34■□□□□ 0.05
CMTM4-201ENST00000330687 KNCNA6PVL3 124 aa15.34■□□□□ 0.05
CMTM4-201ENST00000330687 M0R1W7 72 aa15.34■□□□□ 0.05
CMTM4-201ENST00000330687 OVOL1O14753 267 aa15.33■□□□□ 0.05
CMTM4-201ENST00000330687 NSUN5P1Q3KNT7 163 aa15.33■□□□□ 0.04
CMTM4-201ENST00000330687 hADV29S1A0JD25 119 aa15.33■□□□□ 0.04
CMTM4-201ENST00000330687 HOXD3P31249 432 aaPredicted RBP15.33■□□□□ 0.04
CMTM4-201ENST00000330687 LINC00315P59091 139 aa15.33■□□□□ 0.04
CMTM4-201ENST00000330687 FAM19A5Q7Z5A7 132 aaPredicted RBP15.32■□□□□ 0.04
CMTM4-201ENST00000330687 NXPH4O95158 308 aa15.32■□□□□ 0.04
CMTM4-201ENST00000330687 C3orf22Q8N5N4 141 aa15.32■□□□□ 0.04
CMTM4-201ENST00000330687 IGLV4-3A0A075B6K6 122 aa15.31■□□□□ 0.04
CMTM4-201ENST00000330687 LST1O00453 97 aa15.3■□□□□ 0.04
CMTM4-201ENST00000330687 PF4V1P10720 104 aa15.3■□□□□ 0.04
CMTM4-201ENST00000330687 EDN2P20800 178 aa15.3■□□□□ 0.04
CMTM4-201ENST00000330687 LY6EQ16553 131 aa15.3■□□□□ 0.04
CMTM4-201ENST00000330687 SMCR5Q8TEV8 140 aa15.3■□□□□ 0.04
CMTM4-201ENST00000330687 MRPL53Q96EL3 112 aaKnown RBP15.3■□□□□ 0.04
CMTM4-201ENST00000330687 IGHV3-38A0A0C4DH36 116 aa15.29■□□□□ 0.04
CMTM4-201ENST00000330687 KIF25-AS1Q9Y6Z4 181 aa15.29■□□□□ 0.04
CMTM4-201ENST00000330687 C20orf203Q8NBC4 194 aa15.29■□□□□ 0.04
CMTM4-201ENST00000330687 SAA4P35542 130 aa15.29■□□□□ 0.04
CMTM4-201ENST00000330687 RHPN1-AS1Q9BWJ2 59 aa15.29■□□□□ 0.04
CMTM4-201ENST00000330687 COL27A1Q8IZC6 1860 aaPredicted RBP15.28■□□□□ 0.04
CMTM4-201ENST00000330687 PROK1P58294 105 aa15.28■□□□□ 0.04
CMTM4-201ENST00000330687 IGKV3D-7A0A0C4DH55 119 aa15.28■□□□□ 0.04
CMTM4-201ENST00000330687 DAZ2Q13117 558 aaKnown RBP15.28■□□□□ 0.04
CMTM4-201ENST00000330687 DAZ4Q86SG3 579 aaKnown RBP15.28■□□□□ 0.04
CMTM4-201ENST00000330687 NRGNQ92686 78 aa15.28■□□□□ 0.04
CMTM4-201ENST00000330687 DNAJC30Q96LL9 226 aa15.28■□□□□ 0.04
CMTM4-201ENST00000330687 Q9HAA7 133 aa15.28■□□□□ 0.04
CMTM4-201ENST00000330687 DAZ1Q9NQZ3 744 aaKnown RBP15.28■□□□□ 0.04
CMTM4-201ENST00000330687 DAZ3Q9NR90 486 aaKnown RBP15.28■□□□□ 0.04
CMTM4-201ENST00000330687 TRBV27A0A0K0K1C4 114 aa15.27■□□□□ 0.04
CMTM4-201ENST00000330687 IGKV2D-29A0A075B6S2 120 aaPredicted RBP15.27■□□□□ 0.04
CMTM4-201ENST00000330687 IGHV4OR15-8A0A075B7B6 117 aa15.27■□□□□ 0.04
CMTM4-201ENST00000330687 A0A087WW49 117 aa15.27■□□□□ 0.04
CMTM4-201ENST00000330687 TRBV7-1A0A0A6YYK4 115 aa15.27■□□□□ 0.04
CMTM4-201ENST00000330687 IGKV2-29A2NJV5 120 aaPredicted RBP15.27■□□□□ 0.04
CMTM4-201ENST00000330687 SPINK13Q1W4C9 94 aa15.27■□□□□ 0.04
CMTM4-201ENST00000330687 ITLN2Q8WWU7 325 aaPredicted RBP15.27■□□□□ 0.04
CMTM4-201ENST00000330687 ZFP36P26651 326 aaKnown RBP15.27■□□□□ 0.03
CMTM4-201ENST00000330687 POM121L12Q8N7R1 296 aa15.27■□□□□ 0.03
CMTM4-201ENST00000330687 SPANXA1Q9NS26 97 aa15.26■□□□□ 0.03
CMTM4-201ENST00000330687 LENEPQ9Y5L5 61 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms