RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 IGFL3Q6UXB1 125 aa11.14□□□□□ -0.63
COL7A1-201ENST00000328333 SERP2Q8N6R1 65 aa11.14□□□□□ -0.63
COL7A1-201ENST00000328333 H7C423 109 aa11.14□□□□□ -0.63
COL7A1-201ENST00000328333 IGLV1-44P01699 117 aa11.14□□□□□ -0.63
COL7A1-201ENST00000328333 GTSF1Q8WW33 167 aa11.14□□□□□ -0.63
COL7A1-201ENST00000328333 TEX49A0A1B0GTD5 131 aa11.14□□□□□ -0.63
COL7A1-201ENST00000328333 IGLV3-9A0A075B6K5 115 aa11.14□□□□□ -0.63
COL7A1-201ENST00000328333 RNASE13Q5GAN3 156 aaKnown RBP11.14□□□□□ -0.63
COL7A1-201ENST00000328333 RPL39LQ96EH5 51 aaKnown RBP11.14□□□□□ -0.63
COL7A1-201ENST00000328333 LOXP28300 417 aaPredicted RBP11.13□□□□□ -0.63
COL7A1-201ENST00000328333 IGKV2D-24A0A075B6R9 120 aa11.13□□□□□ -0.63
COL7A1-201ENST00000328333 RNF183Q96D59 192 aa11.13□□□□□ -0.63
COL7A1-201ENST00000328333 PRR30Q53SZ7 412 aaPredicted RBP11.13□□□□□ -0.63
COL7A1-201ENST00000328333 VPREB3Q9UKI3 123 aa11.13□□□□□ -0.63
COL7A1-201ENST00000328333 Q0VFX4 171 aa11.13□□□□□ -0.63
COL7A1-201ENST00000328333 GNLYP22749 145 aa11.12□□□□□ -0.63
COL7A1-201ENST00000328333 E7EQL1 145 aa11.12□□□□□ -0.63
COL7A1-201ENST00000328333 ZMAT4Q9H898 229 aa11.12□□□□□ -0.63
COL7A1-201ENST00000328333 WI2-2373I1.2A0A1W2PRP0 233 aa11.12□□□□□ -0.63
COL7A1-201ENST00000328333 RNF144BQ7Z419 303 aa11.12□□□□□ -0.63
COL7A1-201ENST00000328333 C3orf56Q8N813 242 aa11.11□□□□□ -0.63
COL7A1-201ENST00000328333 VWCEQ96DN2 955 aa11.11□□□□□ -0.63
COL7A1-201ENST00000328333 C4orf48Q5BLP8 95 aa11.11□□□□□ -0.63
COL7A1-201ENST00000328333 FAM110AQ9BQ89 295 aa11.11□□□□□ -0.63
COL7A1-201ENST00000328333 G3V318 75 aa11.11□□□□□ -0.63
COL7A1-201ENST00000328333 TRBV10-1A0A0K0K1A3 114 aa11.11□□□□□ -0.63
COL7A1-201ENST00000328333 COL8A2P25067 703 aa11.11□□□□□ -0.63
COL7A1-201ENST00000328333 DEFB121Q5J5C9 76 aa11.11□□□□□ -0.63
COL7A1-201ENST00000328333 CLEC2BQ92478 149 aa11.1□□□□□ -0.63
COL7A1-201ENST00000328333 TRAV23DV6A0A075B6W5 121 aa11.1□□□□□ -0.63
COL7A1-201ENST00000328333 BLCAPP62952 87 aa11.1□□□□□ -0.63
COL7A1-201ENST00000328333 GYPEP15421 78 aa11.1□□□□□ -0.63
COL7A1-201ENST00000328333 LRRC75A-AS1Q8N1F1 130 aa11.1□□□□□ -0.63
COL7A1-201ENST00000328333 IGKV4-1P06312 121 aa11.1□□□□□ -0.63
COL7A1-201ENST00000328333 COX7BP24311 80 aa11.1□□□□□ -0.63
COL7A1-201ENST00000328333 IGHV4-28A0A0C4DH34 117 aa11.1□□□□□ -0.63
COL7A1-201ENST00000328333 C14orf177Q52M58 125 aa11.09□□□□□ -0.63
COL7A1-201ENST00000328333 CLPSL2Q6UWE3 100 aa11.09□□□□□ -0.63
COL7A1-201ENST00000328333 FAM19A3Q7Z5A8 133 aa11.09□□□□□ -0.63
COL7A1-201ENST00000328333 UNQ6494/PRO21346Q6UXR6 183 aa11.09□□□□□ -0.63
COL7A1-201ENST00000328333 WDR86Q86TI4 376 aa11.09□□□□□ -0.63
COL7A1-201ENST00000328333 SPRY4Q9C004 299 aa11.09□□□□□ -0.63
COL7A1-201ENST00000328333 COLQQ9Y215 455 aaPredicted RBP11.09□□□□□ -0.63
COL7A1-201ENST00000328333 HOXB4P17483 251 aaPredicted RBP11.08□□□□□ -0.64
COL7A1-201ENST00000328333 MT-ATP8P03928 68 aa11.08□□□□□ -0.64
COL7A1-201ENST00000328333 GNRH2O43555 120 aa11.08□□□□□ -0.64
COL7A1-201ENST00000328333 IGHV3-30-3P0DP02 117 aa11.08□□□□□ -0.64
COL7A1-201ENST00000328333 FAM167A-AS1Q96KT0 104 aa11.08□□□□□ -0.64
COL7A1-201ENST00000328333 A0A0J9YXV3 536 aa11.07□□□□□ -0.64
COL7A1-201ENST00000328333 SEM1Q6ZVN7 128 aa11.07□□□□□ -0.64
COL7A1-201ENST00000328333 IGLV11-55A0A075B6I3 123 aa11.07□□□□□ -0.64
COL7A1-201ENST00000328333 LTBP2Q14767 1821 aa11.07□□□□□ -0.64
COL7A1-201ENST00000328333 ODF3Q96PU9 254 aa11.07□□□□□ -0.64
COL7A1-201ENST00000328333 IGLC6P0CF74 106 aa11.06□□□□□ -0.64
COL7A1-201ENST00000328333 CASC2Q6XLA1 102 aa11.06□□□□□ -0.64
COL7A1-201ENST00000328333 C20orf197Q8N268 126 aa11.06□□□□□ -0.64
COL7A1-201ENST00000328333 H0Y9J4 135 aa11.06□□□□□ -0.64
COL7A1-201ENST00000328333 B9D2Q9BPU9 175 aa11.06□□□□□ -0.64
COL7A1-201ENST00000328333 SPART-AS1P0CW21 52 aa11.06□□□□□ -0.64
COL7A1-201ENST00000328333 TPSG1Q9NRR2 321 aa11.06□□□□□ -0.64
COL7A1-201ENST00000328333 TRBV30A0A0K0K1B3 111 aa11.06□□□□□ -0.64
COL7A1-201ENST00000328333 C2orf70A6NJV1 201 aa11.06□□□□□ -0.64
COL7A1-201ENST00000328333 A0A1B0GXF2 115 aa11.06□□□□□ -0.64
COL7A1-201ENST00000328333 A6NED7 52 aa11.06□□□□□ -0.64
COL7A1-201ENST00000328333 I3L2K1 104 aa11.06□□□□□ -0.64
COL7A1-201ENST00000328333 PRRC2CQ9Y520 2896 aaKnown RBP11.05□□□□□ -0.64
COL7A1-201ENST00000328333 TMEM89A2RUT3 159 aa11.05□□□□□ -0.64
COL7A1-201ENST00000328333 DAND5Q8N907 189 aa11.05□□□□□ -0.64
COL7A1-201ENST00000328333 TMEM263Q8WUH6 116 aaKnown RBP11.05□□□□□ -0.64
COL7A1-201ENST00000328333 TIMM17BO60830 172 aa11.05□□□□□ -0.64
COL7A1-201ENST00000328333 IGKV1-17P01599 117 aa11.05□□□□□ -0.64
COL7A1-201ENST00000328333 WISP1O95388 367 aa11.05□□□□□ -0.64
COL7A1-201ENST00000328333 Q6Q795 121 aa11.05□□□□□ -0.64
COL7A1-201ENST00000328333 C5orf38Q86SI9 138 aa11.05□□□□□ -0.64
COL7A1-201ENST00000328333 K7EIM0 57 aa11.04□□□□□ -0.64
COL7A1-201ENST00000328333 K7EMT4 169 aa11.04□□□□□ -0.64
COL7A1-201ENST00000328333 Q6ZR03 302 aa11.04□□□□□ -0.64
COL7A1-201ENST00000328333 TP73-AS1Q9UF72 201 aa11.04□□□□□ -0.64
COL7A1-201ENST00000328333 UFSP1Q6NVU6 142 aa11.04□□□□□ -0.64
COL7A1-201ENST00000328333 CCL18P55774 89 aa11.04□□□□□ -0.64
COL7A1-201ENST00000328333 SDIM1Q6ZPB5 146 aa11.04□□□□□ -0.64
COL7A1-201ENST00000328333 MPLKIPQ8TAP9 179 aa11.04□□□□□ -0.64
COL7A1-201ENST00000328333 USP24Q9UPU5 2620 aa11.04□□□□□ -0.64
COL7A1-201ENST00000328333 IGHV4-4A0A075B6R2 117 aa11.03□□□□□ -0.64
COL7A1-201ENST00000328333 C1orf195Q5TG92 126 aa11.03□□□□□ -0.64
COL7A1-201ENST00000328333 C5orf24Q7Z6I8 188 aa11.03□□□□□ -0.64
COL7A1-201ENST00000328333 MIR7-3HGQ8N6C7 128 aa11.03□□□□□ -0.64
COL7A1-201ENST00000328333 C19orf71A6NCJ1 209 aa11.03□□□□□ -0.64
COL7A1-201ENST00000328333 PRB1P04280 392 aa11.03□□□□□ -0.64
COL7A1-201ENST00000328333 RPL39P62891 51 aaKnown RBP11.03□□□□□ -0.64
COL7A1-201ENST00000328333 C20orf203Q8NBC4 194 aa11.02□□□□□ -0.64
COL7A1-201ENST00000328333 IGKV1OR2-108A0A075B7D4 117 aa11.02□□□□□ -0.64
COL7A1-201ENST00000328333 COX7CP15954 63 aa11.02□□□□□ -0.64
COL7A1-201ENST00000328333 RUSC1-AS1Q66K80 236 aa11.02□□□□□ -0.65
COL7A1-201ENST00000328333 MUC7Q8TAX7 377 aa11.02□□□□□ -0.65
COL7A1-201ENST00000328333 LINC00173Q6ZV60 143 aa11.02□□□□□ -0.65
COL7A1-201ENST00000328333 HHLA3Q9XRX5 114 aa11.02□□□□□ -0.65
COL7A1-201ENST00000328333 IBA57-AS1B1ANH7 110 aa11.02□□□□□ -0.65
COL7A1-201ENST00000328333 NUPR1O60356 82 aa11.02□□□□□ -0.65
COL7A1-201ENST00000328333 SPAG11BQ08648 103 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms