RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 RAB19A4D1S5 217 aa12.86□□□□□ -0.35
LIME1-201ENST00000309546 RBFOX3A6NFN3 312 aa12.86□□□□□ -0.35
LIME1-201ENST00000309546 SULT1A2P50226 295 aa12.86□□□□□ -0.35
LIME1-201ENST00000309546 C15orf54Q8N8G6 183 aa12.86□□□□□ -0.35
LIME1-201ENST00000309546 CHCHD5Q9BSY4 110 aa12.86□□□□□ -0.35
LIME1-201ENST00000309546 CRPP02741 224 aa12.85□□□□□ -0.35
LIME1-201ENST00000309546 C1QBP02746 253 aa12.85□□□□□ -0.35
LIME1-201ENST00000309546 MGPP08493 103 aa12.85□□□□□ -0.35
LIME1-201ENST00000309546 GNG4P50150 75 aa12.85□□□□□ -0.35
LIME1-201ENST00000309546 LINC01620Q4KN68 170 aa12.85□□□□□ -0.35
LIME1-201ENST00000309546 MPV17L2Q567V2 206 aa12.85□□□□□ -0.35
LIME1-201ENST00000309546 OR2D3Q8NGH3 330 aa12.85□□□□□ -0.35
LIME1-201ENST00000309546 IFNA1P01562 189 aa12.84□□□□□ -0.35
LIME1-201ENST00000309546 IGLV2-8P01709 118 aa12.84□□□□□ -0.35
LIME1-201ENST00000309546 RPS20P60866 119 aaKnown RBP12.84□□□□□ -0.35
LIME1-201ENST00000309546 MEF2BQ02080 365 aaPredicted RBP12.84□□□□□ -0.35
LIME1-201ENST00000309546 Q0VG73 95 aa12.84□□□□□ -0.35
LIME1-201ENST00000309546 Q8N976 141 aa12.84□□□□□ -0.35
LIME1-201ENST00000309546 FER1L6-AS1Q8NA97 138 aa12.84□□□□□ -0.35
LIME1-201ENST00000309546 C1orf43Q9BWL3 253 aa12.84□□□□□ -0.35
LIME1-201ENST00000309546 KIF25-AS1Q9Y6Z4 181 aa12.84□□□□□ -0.35
LIME1-201ENST00000309546 ANGP03950 147 aaKnown RBP12.83□□□□□ -0.36
LIME1-201ENST00000309546 TCTE3Q8IZS6 198 aa12.83□□□□□ -0.36
LIME1-201ENST00000309546 MED9Q9NWA0 146 aa12.83□□□□□ -0.36
LIME1-201ENST00000309546 PDE6DO43924 150 aa12.82□□□□□ -0.36
LIME1-201ENST00000309546 IGLC6P0CF74 106 aa12.82□□□□□ -0.36
LIME1-201ENST00000309546 ATRAIDQ6UW56 229 aa12.82□□□□□ -0.36
LIME1-201ENST00000309546 C19orf71A6NCJ1 209 aa12.81□□□□□ -0.36
LIME1-201ENST00000309546 P01737 135 aa12.81□□□□□ -0.36
LIME1-201ENST00000309546 BCL2P10415 239 aa12.81□□□□□ -0.36
LIME1-201ENST00000309546 PKIAP61925 76 aa12.81□□□□□ -0.36
LIME1-201ENST00000309546 TMEM97Q5BJF2 176 aa12.81□□□□□ -0.36
LIME1-201ENST00000309546 ENHOQ6UWT2 76 aa12.81□□□□□ -0.36
LIME1-201ENST00000309546 Q6ZSA8 131 aa12.81□□□□□ -0.36
LIME1-201ENST00000309546 CACNG7P62955 275 aa12.8□□□□□ -0.36
LIME1-201ENST00000309546 NTM-AS1Q6ZSK4 140 aa12.8□□□□□ -0.36
LIME1-201ENST00000309546 SLC51BQ86UW2 128 aa12.8□□□□□ -0.36
LIME1-201ENST00000309546 SMIM12Q96EX1 92 aa12.8□□□□□ -0.36
LIME1-201ENST00000309546 VAX2Q9UIW0 290 aa12.8□□□□□ -0.36
LIME1-201ENST00000309546 TRBV20OR9-2A0A075B6H5 130 aa12.79□□□□□ -0.36
LIME1-201ENST00000309546 XKRY2A2RUG3 117 aa12.79□□□□□ -0.36
LIME1-201ENST00000309546 HLA-DQA1P01909 254 aa12.79□□□□□ -0.36
LIME1-201ENST00000309546 GAGE6Q13070 117 aa12.79□□□□□ -0.36
LIME1-201ENST00000309546 SUMO4Q6EEV6 95 aa12.79□□□□□ -0.36
LIME1-201ENST00000309546 CLPSL2Q6UWE3 100 aa12.79□□□□□ -0.36
LIME1-201ENST00000309546 TRBV25-1A0A075B6N4 114 aa12.78□□□□□ -0.36
LIME1-201ENST00000309546 H7C1H1 209 aa12.78□□□□□ -0.36
LIME1-201ENST00000309546 M0QY20 66 aa12.77□□□□□ -0.37
LIME1-201ENST00000309546 C14orf177Q52M58 125 aa12.77□□□□□ -0.37
LIME1-201ENST00000309546 LINC00528Q8N1L1 170 aa12.77□□□□□ -0.37
LIME1-201ENST00000309546 BIN3Q9NQY0 253 aa12.77□□□□□ -0.37
LIME1-201ENST00000309546 FLG2Q5D862 2391 aaPredicted RBP12.77□□□□□ -0.37
LIME1-201ENST00000309546 HERC1Q15751 4861 aa12.76□□□□□ -0.37
LIME1-201ENST00000309546 TRGC1P0CF51 173 aa12.76□□□□□ -0.37
LIME1-201ENST00000309546 RBX1P62877 108 aa12.76□□□□□ -0.37
LIME1-201ENST00000309546 MIAQ16674 131 aa12.76□□□□□ -0.37
LIME1-201ENST00000309546 LYZL1Q6UWQ5 148 aa12.76□□□□□ -0.37
LIME1-201ENST00000309546 IGHV1-24A0A0C4DH33 117 aa12.75□□□□□ -0.37
LIME1-201ENST00000309546 F2Z2F3 143 aa12.75□□□□□ -0.37
LIME1-201ENST00000309546 PLA2G1BP04054 148 aaKnown RBP12.75□□□□□ -0.37
LIME1-201ENST00000309546 NKX2-5P52952 324 aaPredicted RBP12.75□□□□□ -0.37
LIME1-201ENST00000309546 SCXQ7RTU7 201 aa12.75□□□□□ -0.37
LIME1-201ENST00000309546 MYCBP2O75592 4640 aa12.74□□□□□ -0.37
LIME1-201ENST00000309546 hCG_2014768A0A024R1R8 64 aa12.74□□□□□ -0.37
LIME1-201ENST00000309546 USP17L23D6RBM5 183 aa12.74□□□□□ -0.37
LIME1-201ENST00000309546 IQCJQ1A5X6 159 aa12.74□□□□□ -0.37
LIME1-201ENST00000309546 RASL11AQ6T310 242 aa12.74□□□□□ -0.37
LIME1-201ENST00000309546 LINC00269Q8N2A0 174 aa12.74□□□□□ -0.37
LIME1-201ENST00000309546 NUDT10Q8NFP7 164 aa12.74□□□□□ -0.37
LIME1-201ENST00000309546 NUDT11Q96G61 164 aa12.74□□□□□ -0.37
LIME1-201ENST00000309546 DPH3P1Q9H4G8 78 aa12.74□□□□□ -0.37
LIME1-201ENST00000309546 NTF3P20783 257 aa12.73□□□□□ -0.37
LIME1-201ENST00000309546 TAGLN2P37802 199 aaKnown RBP12.73□□□□□ -0.37
LIME1-201ENST00000309546 AKAP14Q86UN6 197 aa12.72□□□□□ -0.37
LIME1-201ENST00000309546 DEFB104AQ8WTQ1 72 aa12.72□□□□□ -0.37
LIME1-201ENST00000309546 RNASE7Q9H1E1 156 aaKnown RBP12.72□□□□□ -0.37
LIME1-201ENST00000309546 PRR34Q9NV39 138 aa12.72□□□□□ -0.37
LIME1-201ENST00000309546 DMBT1Q9UGM3 2413 aaPredicted RBP12.72□□□□□ -0.37
LIME1-201ENST00000309546 SRRM2Q9UQ35 2752 aaKnown RBP12.72□□□□□ -0.37
LIME1-201ENST00000309546 CTRLP40313 264 aa12.71□□□□□ -0.37
LIME1-201ENST00000309546 C9orf62Q8N4C0 152 aa12.71□□□□□ -0.37
LIME1-201ENST00000309546 RPP21Q9H633 154 aaKnown RBP12.71□□□□□ -0.37
LIME1-201ENST00000309546 A0A1B0GVG6 124 aa12.7□□□□□ -0.38
LIME1-201ENST00000309546 TWIST1Q15672 202 aa12.7□□□□□ -0.38
LIME1-201ENST00000309546 TMEM243Q9BU79 118 aa12.7□□□□□ -0.38
LIME1-201ENST00000309546 CHAC1Q9BUX1 264 aa12.7□□□□□ -0.38
LIME1-201ENST00000309546 IGLV10-54A0A075B6I4 117 aa12.69□□□□□ -0.38
LIME1-201ENST00000309546 K7EN84 100 aa12.69□□□□□ -0.38
LIME1-201ENST00000309546 REG3AQ06141 175 aa12.69□□□□□ -0.38
LIME1-201ENST00000309546 ALKAL2Q6UX46 152 aa12.69□□□□□ -0.38
LIME1-201ENST00000309546 OCC1Q8TAD7 63 aa12.69□□□□□ -0.38
LIME1-201ENST00000309546 NIT2Q9NQR4 276 aa12.69□□□□□ -0.38
LIME1-201ENST00000309546 CIRBP-AS1Q8TBR5 109 aa12.68□□□□□ -0.38
LIME1-201ENST00000309546 UBE2L6O14933 153 aa12.67□□□□□ -0.38
LIME1-201ENST00000309546 PRSS1P07477 247 aa12.67□□□□□ -0.38
LIME1-201ENST00000309546 WDR73Q6P4I2 378 aa12.67□□□□□ -0.38
LIME1-201ENST00000309546 C20orf203Q8NBC4 194 aa12.67□□□□□ -0.38
LIME1-201ENST00000309546 IGLV4-60A0A075B6I1 120 aa12.66□□□□□ -0.38
LIME1-201ENST00000309546 TRAV26-2A0A0B4J265 109 aa12.66□□□□□ -0.38
LIME1-201ENST00000309546 AMTP48728 403 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 102.8 ms