RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 MUC6Q6W4X9 2439 aa4.11□□□□□ -1.75
SCN1A-201ENST00000303395 WI2-2373I1.2A0A1W2PRP0 233 aa4.11□□□□□ -1.75
SCN1A-201ENST00000303395 DEFB131AP59861 70 aa4.11□□□□□ -1.75
SCN1A-201ENST00000303395 NDPQ00604 133 aa4.11□□□□□ -1.75
SCN1A-201ENST00000303395 SPRY4Q9C004 299 aa4.11□□□□□ -1.75
SCN1A-201ENST00000303395 CSDC2Q9Y534 153 aaKnown RBP4.11□□□□□ -1.75
SCN1A-201ENST00000303395 IGHV3-16A0A0C4DH30 117 aa4.11□□□□□ -1.75
SCN1A-201ENST00000303395 NDUFA11Q86Y39 141 aa4.11□□□□□ -1.75
SCN1A-201ENST00000303395 KIAA1549LQ6ZVL6 1849 aa4.11□□□□□ -1.75
SCN1A-201ENST00000303395 NOTCH2Q04721 2471 aa4.11□□□□□ -1.75
SCN1A-201ENST00000303395 C5orf24Q7Z6I8 188 aa4.11□□□□□ -1.75
SCN1A-201ENST00000303395 C9orf66Q5T8R8 295 aa4.11□□□□□ -1.75
SCN1A-201ENST00000303395 ZNF491Q8N8L2 437 aa4.11□□□□□ -1.75
SCN1A-201ENST00000303395 RSPO1Q2MKA7 263 aaPredicted RBP4.11□□□□□ -1.75
SCN1A-201ENST00000303395 FBXL19-AS1Q494R0 122 aa4.11□□□□□ -1.75
SCN1A-201ENST00000303395 NFE4Q86UQ8 179 aa4.11□□□□□ -1.75
SCN1A-201ENST00000303395 ZNRF2Q8NHG8 242 aa4.11□□□□□ -1.75
SCN1A-201ENST00000303395 NDUFA1O15239 70 aa4.1□□□□□ -1.75
SCN1A-201ENST00000303395 IGHV4-59P01825 116 aa4.1□□□□□ -1.75
SCN1A-201ENST00000303395 CD24P25063 80 aa4.1□□□□□ -1.75
SCN1A-201ENST00000303395 C10orf142B7Z368 130 aa4.1□□□□□ -1.75
SCN1A-201ENST00000303395 F8W735 103 aaPredicted RBP4.1□□□□□ -1.75
SCN1A-201ENST00000303395 NDUFA7O95182 113 aa4.1□□□□□ -1.75
SCN1A-201ENST00000303395 WT1-ASQ06250 92 aa4.1□□□□□ -1.75
SCN1A-201ENST00000303395 RHPN1-AS1Q9BWJ2 59 aa4.1□□□□□ -1.75
SCN1A-201ENST00000303395 EXOC3-AS1Q8N2X6 119 aa4.1□□□□□ -1.75
SCN1A-201ENST00000303395 GPHA2Q96T91 129 aa4.1□□□□□ -1.75
SCN1A-201ENST00000303395 SPART-AS1P0CW21 52 aa4.1□□□□□ -1.75
SCN1A-201ENST00000303395 CFAP126Q5VTH2 177 aa4.1□□□□□ -1.75
SCN1A-201ENST00000303395 TMEM200BQ69YZ2 307 aa4.1□□□□□ -1.75
SCN1A-201ENST00000303395 LINC01561Q8N1V8 128 aa4.1□□□□□ -1.75
SCN1A-201ENST00000303395 DEFB104AQ8WTQ1 72 aa4.1□□□□□ -1.75
SCN1A-201ENST00000303395 SPINK13Q1W4C9 94 aa4.1□□□□□ -1.75
SCN1A-201ENST00000303395 IGLV11-55A0A075B6I3 123 aa4.09□□□□□ -1.75
SCN1A-201ENST00000303395 FAM27E3Q08E93 113 aa4.09□□□□□ -1.75
SCN1A-201ENST00000303395 C17orf58Q2M2W7 97 aa4.09□□□□□ -1.75
SCN1A-201ENST00000303395 Q6ZVQ6 151 aa4.09□□□□□ -1.75
SCN1A-201ENST00000303395 MIAQ16674 131 aa4.09□□□□□ -1.75
SCN1A-201ENST00000303395 CTSGP08311 255 aa4.09□□□□□ -1.75
SCN1A-201ENST00000303395 LINC00526Q96FQ7 95 aa4.09□□□□□ -1.75
SCN1A-201ENST00000303395 RFPL3SP0C7P2 107 aa4.09□□□□□ -1.75
SCN1A-201ENST00000303395 Q6JHZ5 121 aa4.09□□□□□ -1.75
SCN1A-201ENST00000303395 A0A096LPF7 62 aa4.09□□□□□ -1.76
SCN1A-201ENST00000303395 HIST2H2BCQ6DN03 193 aa4.09□□□□□ -1.76
SCN1A-201ENST00000303395 PRSS57Q6UWY2 283 aa4.09□□□□□ -1.76
SCN1A-201ENST00000303395 ODF3L1Q8IXM7 274 aa4.09□□□□□ -1.76
SCN1A-201ENST00000303395 C9orf85Q96MD7 179 aa4.09□□□□□ -1.76
SCN1A-201ENST00000303395 RAI1Q7Z5J4 1906 aaPredicted RBP4.09□□□□□ -1.76
SCN1A-201ENST00000303395 PATE3B3GLJ2 98 aa4.09□□□□□ -1.76
SCN1A-201ENST00000303395 K7EIM0 57 aa4.09□□□□□ -1.76
SCN1A-201ENST00000303395 WT1P19544 449 aaPredicted RBP4.09□□□□□ -1.76
SCN1A-201ENST00000303395 FAM219BQ5XKK7 198 aa4.09□□□□□ -1.76
SCN1A-201ENST00000303395 DIRC1Q969H9 104 aa4.09□□□□□ -1.76
SCN1A-201ENST00000303395 TRAV23DV6A0A075B6W5 121 aa4.08□□□□□ -1.76
SCN1A-201ENST00000303395 ZNF706Q9Y5V0 76 aaPredicted RBP4.08□□□□□ -1.76
SCN1A-201ENST00000303395 TRAV26-2A0A0B4J265 109 aa4.08□□□□□ -1.76
SCN1A-201ENST00000303395 I3L2K1 104 aa4.08□□□□□ -1.76
SCN1A-201ENST00000303395 TRBV7-7A0A0K0K1E9 115 aa4.08□□□□□ -1.76
SCN1A-201ENST00000303395 TEX49A0A1B0GTD5 131 aa4.08□□□□□ -1.76
SCN1A-201ENST00000303395 EBI3Q14213 229 aa4.08□□□□□ -1.76
SCN1A-201ENST00000303395 TLN1Q9Y490 2541 aaKnown RBP4.08□□□□□ -1.76
SCN1A-201ENST00000303395 Q8N9L7 120 aa4.08□□□□□ -1.76
SCN1A-201ENST00000303395 LINC00527Q9UJ94 153 aa4.08□□□□□ -1.76
SCN1A-201ENST00000303395 PRR31Q5SQ13 230 aa4.08□□□□□ -1.76
SCN1A-201ENST00000303395 HIST2H2BDQ6DRA6 164 aa4.08□□□□□ -1.76
SCN1A-201ENST00000303395 Q6ZQT7 251 aa4.08□□□□□ -1.76
SCN1A-201ENST00000303395 ZNF524Q96C55 264 aa4.08□□□□□ -1.76
SCN1A-201ENST00000303395 A0A1B0GUS0 222 aa4.08□□□□□ -1.76
SCN1A-201ENST00000303395 LGALS9O00182 355 aa4.08□□□□□ -1.76
SCN1A-201ENST00000303395 BPY2O14599 106 aa4.08□□□□□ -1.76
SCN1A-201ENST00000303395 COX7CP15954 63 aa4.08□□□□□ -1.76
SCN1A-201ENST00000303395 DUX4L9Q6RFH8 374 aaPredicted RBP4.08□□□□□ -1.76
SCN1A-201ENST00000303395 AJUBAQ96IF1 538 aa4.08□□□□□ -1.76
SCN1A-201ENST00000303395 CYYR1Q96J86 154 aa4.08□□□□□ -1.76
SCN1A-201ENST00000303395 PKD1L2Q7Z442 2459 aa4.07□□□□□ -1.76
SCN1A-201ENST00000303395 IGHV7-4-1A0A0J9YVY3 117 aa4.07□□□□□ -1.76
SCN1A-201ENST00000303395 IGKV1-17P01599 117 aa4.07□□□□□ -1.76
SCN1A-201ENST00000303395 UBE2D2P62837 147 aa4.07□□□□□ -1.76
SCN1A-201ENST00000303395 C20orf203Q8NBC4 194 aa4.07□□□□□ -1.76
SCN1A-201ENST00000303395 NEXN-AS1Q8NBZ9 246 aa4.07□□□□□ -1.76
SCN1A-201ENST00000303395 NTN5Q8WTR8 489 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-201ENST00000303395 NOP10Q9NPE3 64 aaKnown RBP4.07□□□□□ -1.76
SCN1A-201ENST00000303395 TRBV27A0A0K0K1C4 114 aa4.07□□□□□ -1.76
SCN1A-201ENST00000303395 TDRG1Q3Y452 100 aa4.07□□□□□ -1.76
SCN1A-201ENST00000303395 C9orf106Q8NAJ2 232 aa4.07□□□□□ -1.76
SCN1A-201ENST00000303395 Q96MF0 132 aa4.07□□□□□ -1.76
SCN1A-201ENST00000303395 MUC22E2RYF6 1773 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-201ENST00000303395 LOC107984640A0A0U1RRK4 108 aa4.07□□□□□ -1.76
SCN1A-201ENST00000303395 FAM236AA0A1B0GUQ0 79 aa4.07□□□□□ -1.76
SCN1A-201ENST00000303395 FAM236BA0A1B0GV22 79 aa4.07□□□□□ -1.76
SCN1A-201ENST00000303395 IBA57-AS1B1ANH7 110 aa4.07□□□□□ -1.76
SCN1A-201ENST00000303395 C16orf74Q96GX8 76 aa4.07□□□□□ -1.76
SCN1A-201ENST00000303395 BDP1A6H8Y1 2624 aa4.07□□□□□ -1.76
SCN1A-201ENST00000303395 LOXP28300 417 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-201ENST00000303395 ZNF837Q96EG3 531 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-201ENST00000303395 CELA2AP08217 269 aa4.07□□□□□ -1.76
SCN1A-201ENST00000303395 COX17Q14061 63 aa4.07□□□□□ -1.76
SCN1A-201ENST00000303395 MSMBP08118 114 aa4.07□□□□□ -1.76
SCN1A-201ENST00000303395 Q8TAT8 98 aa4.07□□□□□ -1.76
SCN1A-201ENST00000303395 USP9XQ93008 2570 aaPredicted RBP4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms