RNA–Protein interactions for RNA: ENST00000300862.7

HIF3A-204, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene HIF3A, Length 2,551 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-204ENST00000300862 HOXD3P31249 432 aaPredicted RBP9.56□□□□□ -0.88
HIF3A-204ENST00000300862 DSCR9P59020 149 aa9.56□□□□□ -0.88
HIF3A-204ENST00000300862 ZNF56Q15929 161 aa9.56□□□□□ -0.88
HIF3A-204ENST00000300862 ZNF580Q9UK33 172 aa9.56□□□□□ -0.88
HIF3A-204ENST00000300862 C11orf86A6NJI1 115 aa9.56□□□□□ -0.88
HIF3A-204ENST00000300862 PRM2P04554 102 aa9.56□□□□□ -0.88
HIF3A-204ENST00000300862 CKS1BP61024 79 aa9.56□□□□□ -0.88
HIF3A-204ENST00000300862 CFAP126Q5VTH2 177 aa9.56□□□□□ -0.88
HIF3A-204ENST00000300862 C1QTNF4Q9BXJ3 329 aa9.56□□□□□ -0.88
HIF3A-204ENST00000300862 EPG5Q9HCE0 2579 aa9.55□□□□□ -0.88
HIF3A-204ENST00000300862 KRTAP10-9P60411 292 aa9.55□□□□□ -0.88
HIF3A-204ENST00000300862 FOXI1Q12951 378 aa9.55□□□□□ -0.88
HIF3A-204ENST00000300862 FHL3Q13643 280 aa9.55□□□□□ -0.88
HIF3A-204ENST00000300862 KIR2DL4Q99706 377 aa9.55□□□□□ -0.88
HIF3A-204ENST00000300862 SETD2Q9BYW2 2564 aaPredicted RBP9.55□□□□□ -0.88
HIF3A-204ENST00000300862 IGIPA6NJ69 53 aa9.55□□□□□ -0.88
HIF3A-204ENST00000300862 HOXA3O43365 443 aaPredicted RBP9.55□□□□□ -0.88
HIF3A-204ENST00000300862 NFE4Q86UQ8 179 aa9.55□□□□□ -0.88
HIF3A-204ENST00000300862 PLEKHB2Q96CS7 222 aa9.55□□□□□ -0.88
HIF3A-204ENST00000300862 C9orf85Q96MD7 179 aa9.55□□□□□ -0.88
HIF3A-204ENST00000300862 DUX3Q96PT4 197 aa9.55□□□□□ -0.88
HIF3A-204ENST00000300862 OPRPNQ99935 248 aaPredicted RBP9.55□□□□□ -0.88
HIF3A-204ENST00000300862 CDIP1Q9H305 208 aa9.55□□□□□ -0.88
HIF3A-204ENST00000300862 VCX2Q9H322 139 aa9.55□□□□□ -0.88
HIF3A-204ENST00000300862 VPREB3Q9UKI3 123 aa9.55□□□□□ -0.88
HIF3A-204ENST00000300862 KNCNA6PVL3 124 aa9.54□□□□□ -0.88
HIF3A-204ENST00000300862 ZNF815PA8K554 130 aa9.54□□□□□ -0.88
HIF3A-204ENST00000300862 VCYO14598 125 aa9.54□□□□□ -0.88
HIF3A-204ENST00000300862 TSPAN13O95857 204 aa9.54□□□□□ -0.88
HIF3A-204ENST00000300862 ZNF702PQ9H963 129 aa9.54□□□□□ -0.88
HIF3A-204ENST00000300862 YAE1D1Q9NRH1 226 aa9.54□□□□□ -0.88
HIF3A-204ENST00000300862 MRPL16Q9NX20 251 aaKnown RBP9.54□□□□□ -0.88
HIF3A-204ENST00000300862 NOTCH3Q9UM47 2321 aa9.54□□□□□ -0.88
HIF3A-204ENST00000300862 WNK1Q9H4A3 2382 aa9.54□□□□□ -0.88
HIF3A-204ENST00000300862 IGLV4-69A0A075B6H9 119 aa9.54□□□□□ -0.88
HIF3A-204ENST00000300862 IGHV1OR15-1A0A075B7D0 117 aa9.54□□□□□ -0.88
HIF3A-204ENST00000300862 SLURP1P55000 103 aa9.54□□□□□ -0.88
HIF3A-204ENST00000300862 SFTA2Q6UW10 78 aa9.54□□□□□ -0.88
HIF3A-204ENST00000300862 SYT8Q8NBV8 401 aa9.54□□□□□ -0.88
HIF3A-204ENST00000300862 ZNF469Q96JG9 3925 aaPredicted RBP9.54□□□□□ -0.88
HIF3A-204ENST00000300862 LINC01549A6NIU2 74 aa9.53□□□□□ -0.88
HIF3A-204ENST00000300862 NF1P21359 2839 aa9.53□□□□□ -0.88
HIF3A-204ENST00000300862 CCDC168Q8NDH2 2452 aa9.53□□□□□ -0.88
HIF3A-204ENST00000300862 IGHV3-73A0A0B4J1V6 119 aa9.53□□□□□ -0.88
HIF3A-204ENST00000300862 M0QY20 66 aa9.53□□□□□ -0.88
HIF3A-204ENST00000300862 COX6B1P14854 86 aa9.53□□□□□ -0.88
HIF3A-204ENST00000300862 UBE2D1P51668 147 aa9.53□□□□□ -0.88
HIF3A-204ENST00000300862 ZNF876PQ49A33 203 aa9.53□□□□□ -0.88
HIF3A-204ENST00000300862 SCGB1D4Q6XE38 83 aa9.53□□□□□ -0.88
HIF3A-204ENST00000300862 DLX4Q92988 240 aaPredicted RBP9.53□□□□□ -0.88
HIF3A-204ENST00000300862 LGALS9O00182 355 aa9.52□□□□□ -0.89
HIF3A-204ENST00000300862 RBMY1A1P0DJD3 496 aaKnown RBP9.52□□□□□ -0.89
HIF3A-204ENST00000300862 RBMY1CP0DJD4 496 aa9.52□□□□□ -0.89
HIF3A-204ENST00000300862 RBMY1FQ15415 496 aaKnown RBP9.52□□□□□ -0.89
HIF3A-204ENST00000300862 ATP6V0E2Q8NHE4 81 aa9.52□□□□□ -0.89
HIF3A-204ENST00000300862 BBC3Q96PG8 261 aaPredicted RBP9.52□□□□□ -0.89
HIF3A-204ENST00000300862 CHD6Q8TD26 2715 aa9.52□□□□□ -0.89
HIF3A-204ENST00000300862 TRBV27A0A0K0K1C4 114 aa9.51□□□□□ -0.89
HIF3A-204ENST00000300862 IGHV4-31P0DP07 118 aa9.51□□□□□ -0.89
HIF3A-204ENST00000300862 PMVKQ15126 192 aa9.51□□□□□ -0.89
HIF3A-204ENST00000300862 TMEM170BQ5T4T1 132 aa9.51□□□□□ -0.89
HIF3A-204ENST00000300862 Q6YL49 198 aa9.51□□□□□ -0.89
HIF3A-204ENST00000300862 PTH2Q96A98 100 aa9.51□□□□□ -0.89
HIF3A-204ENST00000300862 J3QLI3 93 aa9.51□□□□□ -0.89
HIF3A-204ENST00000300862 ZNRF2Q8NHG8 242 aa9.51□□□□□ -0.89
HIF3A-204ENST00000300862 ODF3Q96PU9 254 aa9.51□□□□□ -0.89
HIF3A-204ENST00000300862 PRRC2AP48634 2157 aaKnown RBP9.5□□□□□ -0.89
HIF3A-204ENST00000300862 TMEM89A2RUT3 159 aa9.5□□□□□ -0.89
HIF3A-204ENST00000300862 MT-ATP8P03928 68 aa9.5□□□□□ -0.89
HIF3A-204ENST00000300862 PSMB2P49721 201 aa9.5□□□□□ -0.89
HIF3A-204ENST00000300862 PROK1P58294 105 aa9.5□□□□□ -0.89
HIF3A-204ENST00000300862 DEFB131AP59861 70 aa9.5□□□□□ -0.89
HIF3A-204ENST00000300862 UBE2D3P61077 147 aa9.5□□□□□ -0.89
HIF3A-204ENST00000300862 UBE2D2P62837 147 aa9.5□□□□□ -0.89
HIF3A-204ENST00000300862 RPL32P62910 135 aaKnown RBP9.5□□□□□ -0.89
HIF3A-204ENST00000300862 UBE2E2Q96LR5 201 aa9.5□□□□□ -0.89
HIF3A-204ENST00000300862 CR1P17927 2039 aa9.5□□□□□ -0.89
HIF3A-204ENST00000300862 UBR5O95071 2799 aaPredicted RBP9.5□□□□□ -0.89
HIF3A-204ENST00000300862 LOC107984156A0A0G2JMH3 177 aa9.5□□□□□ -0.89
HIF3A-204ENST00000300862 ELANEP08246 267 aa9.5□□□□□ -0.89
HIF3A-204ENST00000300862 P0DMU3 169 aa9.5□□□□□ -0.89
HIF3A-204ENST00000300862 FAM231AP0DMU4 169 aa9.5□□□□□ -0.89
HIF3A-204ENST00000300862 FAM231CP0DMU5 169 aa9.5□□□□□ -0.89
HIF3A-204ENST00000300862 TSPEAR-AS2P59090 65 aa9.5□□□□□ -0.89
HIF3A-204ENST00000300862 SRSF9Q13242 221 aaKnown RBP eCLIP9.5□□□□□ -0.89
HIF3A-204ENST00000300862 KHDC1LQ5JSQ8 128 aa9.5□□□□□ -0.89
HIF3A-204ENST00000300862 ARL17AQ8IVW1 177 aa9.5□□□□□ -0.89
HIF3A-204ENST00000300862 ZNF418Q8TF45 676 aaPredicted RBP9.5□□□□□ -0.89
HIF3A-204ENST00000300862 XGP55808 180 aa9.49□□□□□ -0.89
HIF3A-204ENST00000300862 CARD19Q96LW7 228 aa9.49□□□□□ -0.89
HIF3A-204ENST00000300862 GEMIN7Q9H840 131 aaKnown RBP9.49□□□□□ -0.89
HIF3A-204ENST00000300862 TRBV6-5A0A0K0K1A5 114 aa9.48□□□□□ -0.89
HIF3A-204ENST00000300862 SPINK8P0C7L1 97 aa9.48□□□□□ -0.89
HIF3A-204ENST00000300862 Q9UF83 564 aa9.48□□□□□ -0.89
HIF3A-204ENST00000300862 APCP25054 2843 aa9.48□□□□□ -0.89
HIF3A-204ENST00000300862 Q6ZUT4 128 aa9.48□□□□□ -0.89
HIF3A-204ENST00000300862 TMEM141Q96I45 108 aa9.48□□□□□ -0.89
HIF3A-204ENST00000300862 TIMM17AQ99595 171 aa9.48□□□□□ -0.89
HIF3A-204ENST00000300862 IGHV3-64A0A075B6Q5 118 aa9.47□□□□□ -0.89
HIF3A-204ENST00000300862 TRAV25A0A0B4J276 109 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms