RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 GAGE1Q13065 139 aa4.53□□□□□ -1.68
DEPDC4-201ENST00000299185 GAGE4Q13068 117 aa4.53□□□□□ -1.68
DEPDC4-201ENST00000299185 GAGE5Q13069 117 aa4.53□□□□□ -1.68
DEPDC4-201ENST00000299185 GAGE13Q4V321 117 aa4.53□□□□□ -1.68
DEPDC4-201ENST00000299185 SUMO4Q6EEV6 95 aa4.53□□□□□ -1.68
DEPDC4-201ENST00000299185 RPL39LQ96EH5 51 aaKnown RBP4.53□□□□□ -1.68
DEPDC4-201ENST00000299185 RNF185Q96GF1 192 aa4.53□□□□□ -1.68
DEPDC4-201ENST00000299185 VSIG2Q96IQ7 327 aa4.53□□□□□ -1.68
DEPDC4-201ENST00000299185 YPEL4Q96NS1 127 aa4.53□□□□□ -1.68
DEPDC4-201ENST00000299185 GFRA4Q9GZZ7 299 aa4.53□□□□□ -1.68
DEPDC4-201ENST00000299185 NAT8BQ9UHF3 227 aa4.53□□□□□ -1.68
DEPDC4-201ENST00000299185 HYDINQ4G0P3 5121 aa4.53□□□□□ -1.68
DEPDC4-201ENST00000299185 TRBV24-1A0A075B6N3 115 aa4.52□□□□□ -1.69
DEPDC4-201ENST00000299185 IGHV4-4A0A075B6R2 117 aa4.52□□□□□ -1.69
DEPDC4-201ENST00000299185 TRAV9-1A0A075B6T8 112 aa4.52□□□□□ -1.69
DEPDC4-201ENST00000299185 IGHV3-38A0A0C4DH36 116 aa4.52□□□□□ -1.69
DEPDC4-201ENST00000299185 COLCA2A8K830 154 aa4.52□□□□□ -1.69
DEPDC4-201ENST00000299185 IGLL5B9A064 214 aa4.52□□□□□ -1.69
DEPDC4-201ENST00000299185 F5H697 171 aa4.52□□□□□ -1.69
DEPDC4-201ENST00000299185 GYPEP15421 78 aa4.52□□□□□ -1.69
DEPDC4-201ENST00000299185 S100PP25815 95 aa4.52□□□□□ -1.69
DEPDC4-201ENST00000299185 RAB4BP61018 213 aa4.52□□□□□ -1.69
DEPDC4-201ENST00000299185 HBBP68871 147 aa4.52□□□□□ -1.69
DEPDC4-201ENST00000299185 RIGQ13278 110 aa4.52□□□□□ -1.69
DEPDC4-201ENST00000299185 ELOBQ15370 118 aa4.52□□□□□ -1.69
DEPDC4-201ENST00000299185 LGALS9BQ3B8N2 356 aa4.52□□□□□ -1.69
DEPDC4-201ENST00000299185 KIAA1644Q3SXP7 199 aa4.52□□□□□ -1.69
DEPDC4-201ENST00000299185 KCNIP4Q6PIL6 250 aa4.52□□□□□ -1.69
DEPDC4-201ENST00000299185 SREK1IP1Q8N9Q2 155 aaPredicted RBP4.52□□□□□ -1.69
DEPDC4-201ENST00000299185 MUC7Q8TAX7 377 aa4.52□□□□□ -1.69
DEPDC4-201ENST00000299185 BORCS7Q96B45 105 aa4.52□□□□□ -1.69
DEPDC4-201ENST00000299185 BTF3L4Q96K17 158 aa4.52□□□□□ -1.69
DEPDC4-201ENST00000299185 CNFNQ9BYD5 112 aa4.52□□□□□ -1.69
DEPDC4-201ENST00000299185 TEX48A0A1B0GUV7 120 aa4.51□□□□□ -1.69
DEPDC4-201ENST00000299185 A8MWV9 139 aa4.51□□□□□ -1.69
DEPDC4-201ENST00000299185 K7EQD1 137 aa4.51□□□□□ -1.69
DEPDC4-201ENST00000299185 NUDT3O95989 172 aa4.51□□□□□ -1.69
DEPDC4-201ENST00000299185 TRGC1P0CF51 173 aa4.51□□□□□ -1.69
DEPDC4-201ENST00000299185 CRYBA4P53673 196 aa4.51□□□□□ -1.69
DEPDC4-201ENST00000299185 SLAQ13239 276 aa4.51□□□□□ -1.69
DEPDC4-201ENST00000299185 MRPL51Q4U2R6 128 aaKnown RBP4.51□□□□□ -1.69
DEPDC4-201ENST00000299185 TMEM136Q6ZRR5 245 aa4.51□□□□□ -1.69
DEPDC4-201ENST00000299185 SLC25A29Q8N8R3 303 aa4.51□□□□□ -1.69
DEPDC4-201ENST00000299185 NEXN-AS1Q8NBZ9 246 aa4.51□□□□□ -1.69
DEPDC4-201ENST00000299185 PTH2Q96A98 100 aa4.51□□□□□ -1.69
DEPDC4-201ENST00000299185 DPH3P1Q9H4G8 78 aa4.51□□□□□ -1.69
DEPDC4-201ENST00000299185 STARD9Q9P2P6 4700 aa4.5□□□□□ -1.69
DEPDC4-201ENST00000299185 STAB2Q8WWQ8 2551 aa4.5□□□□□ -1.69
DEPDC4-201ENST00000299185 F2Z2F3 143 aa4.5□□□□□ -1.69
DEPDC4-201ENST00000299185 RHODO00212 210 aa4.5□□□□□ -1.69
DEPDC4-201ENST00000299185 NPYP01303 97 aa4.5□□□□□ -1.69
DEPDC4-201ENST00000299185 SMIM17P0DL12 118 aa4.5□□□□□ -1.69
DEPDC4-201ENST00000299185 LINC00694P0DN24 101 aa4.5□□□□□ -1.69
DEPDC4-201ENST00000299185 CEMP1Q6PRD7 247 aaPredicted RBP4.5□□□□□ -1.69
DEPDC4-201ENST00000299185 GATD1Q8NB37 220 aa4.5□□□□□ -1.69
DEPDC4-201ENST00000299185 C18orf15Q96N68 181 aa4.5□□□□□ -1.69
DEPDC4-201ENST00000299185 ALMS1Q8TCU4 4167 aa4.5□□□□□ -1.69
DEPDC4-201ENST00000299185 D6R8Y8 96 aa4.49□□□□□ -1.69
DEPDC4-201ENST00000299185 M0QY20 66 aa4.49□□□□□ -1.69
DEPDC4-201ENST00000299185 RAB4AP20338 218 aa4.49□□□□□ -1.69
DEPDC4-201ENST00000299185 RAB5AP20339 215 aa4.49□□□□□ -1.69
DEPDC4-201ENST00000299185 IQCJQ1A5X6 159 aa4.49□□□□□ -1.69
DEPDC4-201ENST00000299185 FAM104BQ5XKR9 115 aa4.49□□□□□ -1.69
DEPDC4-201ENST00000299185 NRACQ8N912 160 aa4.49□□□□□ -1.69
DEPDC4-201ENST00000299185 FAM210BQ96KR6 192 aa4.49□□□□□ -1.69
DEPDC4-201ENST00000299185 NDUFAF3Q9BU61 184 aa4.49□□□□□ -1.69
DEPDC4-201ENST00000299185 TMEM191AQ9H0A3 160 aa4.49□□□□□ -1.69
DEPDC4-201ENST00000299185 APLNQ9ULZ1 77 aa4.49□□□□□ -1.69
DEPDC4-201ENST00000299185 HHLA3Q9XRX5 114 aa4.49□□□□□ -1.69
DEPDC4-201ENST00000299185 NUPR2A6NF83 97 aa4.48□□□□□ -1.69
DEPDC4-201ENST00000299185 RHOHQ15669 191 aa4.48□□□□□ -1.69
DEPDC4-201ENST00000299185 COX19Q49B96 90 aa4.48□□□□□ -1.69
DEPDC4-201ENST00000299185 OR10J3Q5JRS4 329 aa4.48□□□□□ -1.69
DEPDC4-201ENST00000299185 CASC10Q5T4H9 136 aa4.48□□□□□ -1.69
DEPDC4-201ENST00000299185 WDR73Q6P4I2 378 aa4.48□□□□□ -1.69
DEPDC4-201ENST00000299185 RASL11AQ6T310 242 aa4.48□□□□□ -1.69
DEPDC4-201ENST00000299185 ZFP2Q6ZN57 461 aa4.48□□□□□ -1.69
DEPDC4-201ENST00000299185 ATP5L2Q7Z4Y8 100 aa4.48□□□□□ -1.69
DEPDC4-201ENST00000299185 ZNRF2Q8NHG8 242 aa4.48□□□□□ -1.69
DEPDC4-201ENST00000299185 PRO0255Q9UI72 69 aa4.48□□□□□ -1.69
DEPDC4-201ENST00000299185 DYNC2H1Q8NCM8 4307 aaKnown RBP4.48□□□□□ -1.69
DEPDC4-201ENST00000299185 A0A1B0GW15 77 aa4.47□□□□□ -1.69
DEPDC4-201ENST00000299185 SRIP30626 198 aa4.47□□□□□ -1.69
DEPDC4-201ENST00000299185 PIK3CD-AS1Q5SR53 167 aa4.47□□□□□ -1.69
DEPDC4-201ENST00000299185 SMIM15Q7Z3B0 74 aa4.47□□□□□ -1.69
DEPDC4-201ENST00000299185 FRZBQ92765 325 aa4.47□□□□□ -1.69
DEPDC4-201ENST00000299185 GNB1LQ9BYB4 327 aa4.47□□□□□ -1.69
DEPDC4-201ENST00000299185 ICOSQ9Y6W8 199 aa4.47□□□□□ -1.69
DEPDC4-201ENST00000299185 DNAH7Q8WXX0 4024 aa4.47□□□□□ -1.69
DEPDC4-201ENST00000299185 COL7A1Q02388 2944 aa4.46□□□□□ -1.69
DEPDC4-201ENST00000299185 LOC389332A0A1B0GUA5 103 aa4.46□□□□□ -1.7
DEPDC4-201ENST00000299185 TRBV6-4A0A1B0GX49 114 aa4.46□□□□□ -1.7
DEPDC4-201ENST00000299185 HLA-DQA1P01909 254 aa4.46□□□□□ -1.7
DEPDC4-201ENST00000299185 APCSP02743 223 aa4.46□□□□□ -1.7
DEPDC4-201ENST00000299185 CKS2P33552 79 aa4.46□□□□□ -1.7
DEPDC4-201ENST00000299185 UBE2D3P61077 147 aa4.46□□□□□ -1.7
DEPDC4-201ENST00000299185 UBE2D2P62837 147 aa4.46□□□□□ -1.7
DEPDC4-201ENST00000299185 FABP9Q0Z7S8 132 aa4.46□□□□□ -1.7
DEPDC4-201ENST00000299185 ESRGQ1W209 222 aa4.46□□□□□ -1.7
DEPDC4-201ENST00000299185 WFDC10BQ8IUB3 73 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms