RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 IGHV4OR15-8A0A075B7B6 117 aa7.68□□□□□ -1.18
COL6A3-201ENST00000295550 A0A087WW49 117 aa7.68□□□□□ -1.18
COL6A3-201ENST00000295550 K7EQD1 137 aa7.68□□□□□ -1.18
COL6A3-201ENST00000295550 HIGD2BQ4VC39 106 aa7.68□□□□□ -1.18
COL6A3-201ENST00000295550 FAM236DA0A1B0GTK5 79 aa7.68□□□□□ -1.18
COL6A3-201ENST00000295550 MSMBP08118 114 aa7.68□□□□□ -1.18
COL6A3-201ENST00000295550 FAM236CP0DP71 79 aa7.68□□□□□ -1.18
COL6A3-201ENST00000295550 A0A0J9YY99 117 aa7.68□□□□□ -1.18
COL6A3-201ENST00000295550 TRBV10-2A0A0K0K1G8 114 aa7.68□□□□□ -1.18
COL6A3-201ENST00000295550 GYPEP15421 78 aa7.68□□□□□ -1.18
COL6A3-201ENST00000295550 DAZ2Q13117 558 aaKnown RBP7.68□□□□□ -1.18
COL6A3-201ENST00000295550 SEM1Q6ZVN7 128 aa7.68□□□□□ -1.18
COL6A3-201ENST00000295550 DAZ4Q86SG3 579 aaKnown RBP7.68□□□□□ -1.18
COL6A3-201ENST00000295550 DAZ3Q9NR90 486 aaKnown RBP7.68□□□□□ -1.18
COL6A3-201ENST00000295550 IGF2-ASQ6U949 168 aa7.68□□□□□ -1.18
COL6A3-201ENST00000295550 C5orf38Q86SI9 138 aa7.68□□□□□ -1.18
COL6A3-201ENST00000295550 H3BT86 120 aa7.68□□□□□ -1.18
COL6A3-201ENST00000295550 IGFL2Q6UWQ7 119 aa7.68□□□□□ -1.18
COL6A3-201ENST00000295550 FAM240AA0A1B0GVK7 77 aa7.68□□□□□ -1.18
COL6A3-201ENST00000295550 JMJD7-PLA2G4BH0Y9G9 81 aa7.68□□□□□ -1.18
COL6A3-201ENST00000295550 LECT2O14960 151 aa7.68□□□□□ -1.18
COL6A3-201ENST00000295550 USP24Q9UPU5 2620 aa7.68□□□□□ -1.18
COL6A3-201ENST00000295550 TEX49A0A1B0GTD5 131 aa7.67□□□□□ -1.18
COL6A3-201ENST00000295550 DIAPH2-AS1Q14236 149 aa7.67□□□□□ -1.18
COL6A3-201ENST00000295550 Q71RC1 249 aaPredicted RBP7.67□□□□□ -1.18
COL6A3-201ENST00000295550 RNF152Q8N8N0 203 aa7.67□□□□□ -1.18
COL6A3-201ENST00000295550 ANKRD11Q6UB99 2663 aaPredicted RBP7.67□□□□□ -1.18
COL6A3-201ENST00000295550 TMEM256-PLSCR3K7ERE1 68 aa7.67□□□□□ -1.18
COL6A3-201ENST00000295550 H0Y9J4 135 aa7.67□□□□□ -1.18
COL6A3-201ENST00000295550 PDE6GP18545 87 aa7.67□□□□□ -1.18
COL6A3-201ENST00000295550 NDUFC2-KCTD14E9PQ53 114 aa7.67□□□□□ -1.18
COL6A3-201ENST00000295550 C17orf77Q96MU5 243 aa7.67□□□□□ -1.18
COL6A3-201ENST00000295550 WI2-2373I1.2A0A1W2PRP0 233 aa7.66□□□□□ -1.18
COL6A3-201ENST00000295550 MT-ATP8P03928 68 aa7.66□□□□□ -1.18
COL6A3-201ENST00000295550 PRR30Q53SZ7 412 aaPredicted RBP7.66□□□□□ -1.18
COL6A3-201ENST00000295550 Q6ZPA2 131 aa7.66□□□□□ -1.18
COL6A3-201ENST00000295550 SDIM1Q6ZPB5 146 aa7.66□□□□□ -1.18
COL6A3-201ENST00000295550 SPRNQ5BIV9 151 aa7.65□□□□□ -1.18
COL6A3-201ENST00000295550 FAM167A-AS1Q96KT0 104 aa7.65□□□□□ -1.18
COL6A3-201ENST00000295550 UQCRQO14949 82 aa7.65□□□□□ -1.18
COL6A3-201ENST00000295550 C3orf22Q8N5N4 141 aa7.65□□□□□ -1.18
COL6A3-201ENST00000295550 TOMM6Q96B49 74 aa7.65□□□□□ -1.18
COL6A3-201ENST00000295550 RNF223E7ERA6 249 aa7.65□□□□□ -1.18
COL6A3-201ENST00000295550 HOXB4P17483 251 aaPredicted RBP7.65□□□□□ -1.18
COL6A3-201ENST00000295550 RPL39P62891 51 aaKnown RBP7.65□□□□□ -1.18
COL6A3-201ENST00000295550 LENEPQ9Y5L5 61 aa7.65□□□□□ -1.18
COL6A3-201ENST00000295550 NUPR1O60356 82 aa7.65□□□□□ -1.18
COL6A3-201ENST00000295550 IGKV2D-26A0A0A0MRZ7 120 aa7.65□□□□□ -1.18
COL6A3-201ENST00000295550 TCL1BO95988 128 aa7.65□□□□□ -1.18
COL6A3-201ENST00000295550 UBE2AP49459 152 aa7.65□□□□□ -1.18
COL6A3-201ENST00000295550 YPEL4Q96NS1 127 aa7.65□□□□□ -1.18
COL6A3-201ENST00000295550 K7ERS5 55 aa7.65□□□□□ -1.18
COL6A3-201ENST00000295550 LINC00643Q86TS7 51 aa7.65□□□□□ -1.18
COL6A3-201ENST00000295550 ZNF295-AS1Q8N0V1 137 aa7.65□□□□□ -1.18
COL6A3-201ENST00000295550 K7ENP7 123 aa7.65□□□□□ -1.19
COL6A3-201ENST00000295550 ATP5EP2Q5VTU8 51 aa7.65□□□□□ -1.19
COL6A3-201ENST00000295550 ODF3L1Q8IXM7 274 aa7.65□□□□□ -1.19
COL6A3-201ENST00000295550 NPBQ8NG41 125 aa7.65□□□□□ -1.19
COL6A3-201ENST00000295550 IGLV2-23P01705 113 aa7.64□□□□□ -1.19
COL6A3-201ENST00000295550 ATP5EP56381 51 aaPredicted RBP7.64□□□□□ -1.19
COL6A3-201ENST00000295550 C16orf74Q96GX8 76 aa7.64□□□□□ -1.19
COL6A3-201ENST00000295550 CXCL5P42830 114 aa7.64□□□□□ -1.19
COL6A3-201ENST00000295550 ZNF491Q8N8L2 437 aa7.64□□□□□ -1.19
COL6A3-201ENST00000295550 NDUFA1O15239 70 aa7.64□□□□□ -1.19
COL6A3-201ENST00000295550 NDUFA11Q86Y39 141 aa7.64□□□□□ -1.19
COL6A3-201ENST00000295550 PRR15LQ9BU68 103 aa7.64□□□□□ -1.19
COL6A3-201ENST00000295550 PTH2Q96A98 100 aa7.64□□□□□ -1.19
COL6A3-201ENST00000295550 CTSZQ9UBR2 303 aa7.64□□□□□ -1.19
COL6A3-201ENST00000295550 MLST8Q9BVC4 326 aa7.64□□□□□ -1.19
COL6A3-201ENST00000295550 AGPAT4-IT1Q9H0P7 198 aa7.64□□□□□ -1.19
COL6A3-201ENST00000295550 ODF1Q14990 250 aa7.63□□□□□ -1.19
COL6A3-201ENST00000295550 MAPK1IP1LQ8NDC0 245 aa7.63□□□□□ -1.19
COL6A3-201ENST00000295550 FANCD2OSQ96PS1 177 aa7.63□□□□□ -1.19
COL6A3-201ENST00000295550 A0A0J9YXV3 536 aa7.63□□□□□ -1.19
COL6A3-201ENST00000295550 I3L2K1 104 aa7.63□□□□□ -1.19
COL6A3-201ENST00000295550 GNLYP22749 145 aa7.63□□□□□ -1.19
COL6A3-201ENST00000295550 USP9YO00507 2555 aaPredicted RBP7.63□□□□□ -1.19
COL6A3-201ENST00000295550 TRBV7-3A0A075B6L6 115 aa7.63□□□□□ -1.19
COL6A3-201ENST00000295550 DIRC1Q969H9 104 aa7.63□□□□□ -1.19
COL6A3-201ENST00000295550 SPRY2O43597 315 aa7.63□□□□□ -1.19
COL6A3-201ENST00000295550 LINC00574Q9H8X3 128 aa7.63□□□□□ -1.19
COL6A3-201ENST00000295550 EIF4EBP1Q13541 118 aaPredicted RBP7.62□□□□□ -1.19
COL6A3-201ENST00000295550 SPRY4Q9C004 299 aa7.62□□□□□ -1.19
COL6A3-201ENST00000295550 TRBV6-1A0A0K0K1D8 114 aa7.62□□□□□ -1.19
COL6A3-201ENST00000295550 CTRLP40313 264 aa7.62□□□□□ -1.19
COL6A3-201ENST00000295550 USP17L23D6RBM5 183 aa7.62□□□□□ -1.19
COL6A3-201ENST00000295550 E9PLD3 99 aa7.62□□□□□ -1.19
COL6A3-201ENST00000295550 PATE2Q6UY27 113 aa7.62□□□□□ -1.19
COL6A3-201ENST00000295550 H3BUA1 57 aa7.62□□□□□ -1.19
COL6A3-201ENST00000295550 PIFOQ8TCI5 191 aa7.62□□□□□ -1.19
COL6A3-201ENST00000295550 C11orf86A6NJI1 115 aa7.62□□□□□ -1.19
COL6A3-201ENST00000295550 NDUFA7O95182 113 aa7.62□□□□□ -1.19
COL6A3-201ENST00000295550 SPANXB1Q9NS25 103 aaPredicted RBP7.61□□□□□ -1.19
COL6A3-201ENST00000295550 DEFB136Q30KP8 78 aa7.61□□□□□ -1.19
COL6A3-201ENST00000295550 CASC2Q6XLA1 102 aa7.61□□□□□ -1.19
COL6A3-201ENST00000295550 C20orf197Q8N268 126 aa7.61□□□□□ -1.19
COL6A3-201ENST00000295550 GTSF1Q8WW33 167 aa7.61□□□□□ -1.19
COL6A3-201ENST00000295550 BPY2O14599 106 aa7.61□□□□□ -1.19
COL6A3-201ENST00000295550 PRSS33Q8NF86 280 aa7.61□□□□□ -1.19
COL6A3-201ENST00000295550 Q8N1Y9 231 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 571.9 ms