RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 SNAI2O43623 268 aa8.32□□□□□ -1.08
CD44-203ENST00000278386 ZNF345Q14585 488 aa8.32□□□□□ -1.08
CD44-203ENST00000278386 CLPSL2Q6UWE3 100 aa8.32□□□□□ -1.08
CD44-203ENST00000278386 ENHOQ6UWT2 76 aa8.32□□□□□ -1.08
CD44-203ENST00000278386 CIRBP-AS1Q8TBR5 109 aa8.32□□□□□ -1.08
CD44-203ENST00000278386 AP1S3Q96PC3 154 aa8.32□□□□□ -1.08
CD44-203ENST00000278386 UMAD1C9J7I0 102 aa8.31□□□□□ -1.08
CD44-203ENST00000278386 USP17L23D6RBM5 183 aa8.31□□□□□ -1.08
CD44-203ENST00000278386 TMEM97Q5BJF2 176 aa8.31□□□□□ -1.08
CD44-203ENST00000278386 FAT3Q8TDW7 4589 aa8.3□□□□□ -1.08
CD44-203ENST00000278386 KANTRA0A1W2PQU2 76 aa8.3□□□□□ -1.08
CD44-203ENST00000278386 BCL2L11O43521 198 aa8.3□□□□□ -1.08
CD44-203ENST00000278386 IGLV2-8P01709 118 aa8.3□□□□□ -1.08
CD44-203ENST00000278386 MGPP08493 103 aa8.3□□□□□ -1.08
CD44-203ENST00000278386 OR5AL1P0C617 328 aa8.3□□□□□ -1.08
CD44-203ENST00000278386 GAGE6Q13070 117 aa8.3□□□□□ -1.08
CD44-203ENST00000278386 MIAQ16674 131 aa8.3□□□□□ -1.08
CD44-203ENST00000278386 Q6ZNX1 250 aa8.3□□□□□ -1.08
CD44-203ENST00000278386 MBD3L1Q8WWY6 194 aa8.3□□□□□ -1.08
CD44-203ENST00000278386 MLST8Q9BVC4 326 aa8.3□□□□□ -1.08
CD44-203ENST00000278386 TPPP3Q9BW30 176 aa8.3□□□□□ -1.08
CD44-203ENST00000278386 TRBV25-1A0A075B6N4 114 aa8.29□□□□□ -1.08
CD44-203ENST00000278386 H2AFB1P0C5Y9 115 aa8.29□□□□□ -1.08
CD44-203ENST00000278386 RPL35P42766 123 aaKnown RBP8.29□□□□□ -1.08
CD44-203ENST00000278386 TMUB2Q71RG4 321 aa8.29□□□□□ -1.08
CD44-203ENST00000278386 DERL1Q9BUN8 251 aa8.29□□□□□ -1.08
CD44-203ENST00000278386 SSBP4Q9BWG4 385 aaPredicted RBP8.29□□□□□ -1.08
CD44-203ENST00000278386 LRP1Q07954 4544 aaKnown RBP8.29□□□□□ -1.08
CD44-203ENST00000278386 A0A0D9SG52 128 aa8.28□□□□□ -1.08
CD44-203ENST00000278386 RBX1P62877 108 aa8.28□□□□□ -1.08
CD44-203ENST00000278386 VAX2Q9UIW0 290 aa8.28□□□□□ -1.08
CD44-203ENST00000278386 KRTAP10-4P60372 401 aaPredicted RBP8.27□□□□□ -1.09
CD44-203ENST00000278386 RPL37AP61513 92 aaKnown RBP8.27□□□□□ -1.09
CD44-203ENST00000278386 EIF5AP63241 154 aaKnown RBP8.27□□□□□ -1.09
CD44-203ENST00000278386 NTM-AS1Q6ZSK4 140 aa8.27□□□□□ -1.09
CD44-203ENST00000278386 LINC00269Q8N2A0 174 aa8.27□□□□□ -1.09
CD44-203ENST00000278386 MANBALQ9NQG1 85 aa8.27□□□□□ -1.09
CD44-203ENST00000278386 GNG13Q9P2W3 67 aa8.27□□□□□ -1.09
CD44-203ENST00000278386 IGHV1-24A0A0C4DH33 117 aa8.26□□□□□ -1.09
CD44-203ENST00000278386 H7C1H1 209 aa8.26□□□□□ -1.09
CD44-203ENST00000278386 PRSS1P07477 247 aa8.26□□□□□ -1.09
CD44-203ENST00000278386 GZMBP10144 247 aa8.26□□□□□ -1.09
CD44-203ENST00000278386 CENPWQ5EE01 88 aa8.26□□□□□ -1.09
CD44-203ENST00000278386 TCTE3Q8IZS6 198 aa8.26□□□□□ -1.09
CD44-203ENST00000278386 FER1L6-AS1Q8NA97 138 aa8.26□□□□□ -1.09
CD44-203ENST00000278386 DAZAP1Q96EP5 407 aaKnown RBP8.26□□□□□ -1.09
CD44-203ENST00000278386 KIF25-AS1Q9Y6Z4 181 aa8.26□□□□□ -1.09
CD44-203ENST00000278386 hCG_2014768A0A024R1R8 64 aa8.25□□□□□ -1.09
CD44-203ENST00000278386 IGLV10-54A0A075B6I4 117 aa8.25□□□□□ -1.09
CD44-203ENST00000278386 RPS20P60866 119 aaKnown RBP8.25□□□□□ -1.09
CD44-203ENST00000278386 SUMO4Q6EEV6 95 aa8.25□□□□□ -1.09
CD44-203ENST00000278386 OR2D3Q8NGH3 330 aa8.25□□□□□ -1.09
CD44-203ENST00000278386 C11orf52Q96A22 123 aa8.25□□□□□ -1.09
CD44-203ENST00000278386 PRR34Q9NV39 138 aa8.25□□□□□ -1.09
CD44-203ENST00000278386 OXTP01178 125 aa8.24□□□□□ -1.09
CD44-203ENST00000278386 REG3AQ06141 175 aa8.24□□□□□ -1.09
CD44-203ENST00000278386 IQCJQ1A5X6 159 aa8.24□□□□□ -1.09
CD44-203ENST00000278386 HMCN2Q8NDA2 5059 aa8.23□□□□□ -1.09
CD44-203ENST00000278386 M0QY20 66 aa8.23□□□□□ -1.09
CD44-203ENST00000278386 IGLC6P0CF74 106 aa8.23□□□□□ -1.09
CD44-203ENST00000278386 GNG4P50150 75 aa8.23□□□□□ -1.09
CD44-203ENST00000278386 NKX2-5P52952 324 aaPredicted RBP8.23□□□□□ -1.09
CD44-203ENST00000278386 CACNG7P62955 275 aa8.23□□□□□ -1.09
CD44-203ENST00000278386 CCL20P78556 96 aa8.23□□□□□ -1.09
CD44-203ENST00000278386 SERTAD4-AS1Q5TG53 156 aa8.23□□□□□ -1.09
CD44-203ENST00000278386 DGAT2L7PQ6IED9 249 aa8.23□□□□□ -1.09
CD44-203ENST00000278386 C9orf163Q8N9P6 203 aa8.23□□□□□ -1.09
CD44-203ENST00000278386 hDV102S1A0JD36 115 aa8.22□□□□□ -1.09
CD44-203ENST00000278386 XKRY2A2RUG3 117 aa8.22□□□□□ -1.09
CD44-203ENST00000278386 TEX46H3BTG2 121 aa8.22□□□□□ -1.09
CD44-203ENST00000278386 P01737 135 aa8.22□□□□□ -1.09
CD44-203ENST00000278386 TRGC1P0CF51 173 aa8.22□□□□□ -1.09
CD44-203ENST00000278386 TMEM243Q9BU79 118 aa8.22□□□□□ -1.09
CD44-203ENST00000278386 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.22□□□□□ -1.09
CD44-203ENST00000278386 RAB19A4D1S5 217 aa8.21□□□□□ -1.1
CD44-203ENST00000278386 C19orf71A6NCJ1 209 aa8.21□□□□□ -1.1
CD44-203ENST00000278386 UBE2L6O14933 153 aa8.21□□□□□ -1.1
CD44-203ENST00000278386 IFNA1P01562 189 aa8.21□□□□□ -1.1
CD44-203ENST00000278386 KRTAP26-1Q6PEX3 210 aa8.21□□□□□ -1.1
CD44-203ENST00000278386 RASL11AQ6T310 242 aa8.21□□□□□ -1.1
CD44-203ENST00000278386 CLRN3Q8NCR9 226 aa8.21□□□□□ -1.1
CD44-203ENST00000278386 DPH3P1Q9H4G8 78 aa8.21□□□□□ -1.1
CD44-203ENST00000278386 A0A1B0GVG6 124 aa8.2□□□□□ -1.1
CD44-203ENST00000278386 PANO1I0J062 215 aa8.2□□□□□ -1.1
CD44-203ENST00000278386 RAB5CP51148 216 aa8.2□□□□□ -1.1
CD44-203ENST00000278386 MEF2BQ02080 365 aaPredicted RBP8.2□□□□□ -1.1
CD44-203ENST00000278386 WDR73Q6P4I2 378 aa8.2□□□□□ -1.1
CD44-203ENST00000278386 LYZL1Q6UWQ5 148 aa8.2□□□□□ -1.1
CD44-203ENST00000278386 C20orf203Q8NBC4 194 aa8.2□□□□□ -1.1
CD44-203ENST00000278386 SMIM12Q96EX1 92 aa8.2□□□□□ -1.1
CD44-203ENST00000278386 AP5S1Q9NUS5 200 aa8.2□□□□□ -1.1
CD44-203ENST00000278386 IGLV4-60A0A075B6I1 120 aa8.19□□□□□ -1.1
CD44-203ENST00000278386 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.19□□□□□ -1.1
CD44-203ENST00000278386 TRAV8-4A0A0B4J246 113 aa8.19□□□□□ -1.1
CD44-203ENST00000278386 TRAV1-1A0A0B4J248 108 aa8.19□□□□□ -1.1
CD44-203ENST00000278386 F2Z2F3 143 aa8.19□□□□□ -1.1
CD44-203ENST00000278386 PDE6DO43924 150 aa8.19□□□□□ -1.1
CD44-203ENST00000278386 AMTP48728 403 aa8.19□□□□□ -1.1
CD44-203ENST00000278386 SULT1A2P50226 295 aa8.19□□□□□ -1.1
CD44-203ENST00000278386 HNRNPA3P51991 378 aaKnown RBP8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 126.8 ms