RNA–Protein interactions for RNA: ENST00000273317.4

LIMD1-201, Transcript of LIM domains containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD1, Length 11,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-201ENST00000273317 TAX1BP3O14907 124 aa6.19□□□□□ -1.42
LIMD1-201ENST00000273317 ATP5EP56381 51 aaPredicted RBP6.19□□□□□ -1.42
LIMD1-201ENST00000273317 C17orf77Q96MU5 243 aa6.19□□□□□ -1.42
LIMD1-201ENST00000273317 CRYGBP07316 175 aa6.19□□□□□ -1.42
LIMD1-201ENST00000273317 LRP4O75096 1905 aa6.19□□□□□ -1.42
LIMD1-201ENST00000273317 IGKV1-17P01599 117 aa6.19□□□□□ -1.42
LIMD1-201ENST00000273317 TRBV12-3P01733 135 aa6.19□□□□□ -1.42
LIMD1-201ENST00000273317 C14orf177Q52M58 125 aa6.19□□□□□ -1.42
LIMD1-201ENST00000273317 IGHV7-81A0A0B4J1V7 117 aa6.18□□□□□ -1.42
LIMD1-201ENST00000273317 Q6ZSR3 168 aa6.18□□□□□ -1.42
LIMD1-201ENST00000273317 C4orf3Q8WVX3 66 aa6.18□□□□□ -1.42
LIMD1-201ENST00000273317 DIRC1Q969H9 104 aa6.18□□□□□ -1.42
LIMD1-201ENST00000273317 CENPVL3A0A0U1RRI6 287 aa6.18□□□□□ -1.42
LIMD1-201ENST00000273317 ANKRD39Q53RE8 183 aa6.18□□□□□ -1.42
LIMD1-201ENST00000273317 FAM167A-AS1Q96KT0 104 aa6.18□□□□□ -1.42
LIMD1-201ENST00000273317 WI2-2373I1.2A0A1W2PRP0 233 aa6.18□□□□□ -1.42
LIMD1-201ENST00000273317 ODF1Q14990 250 aa6.18□□□□□ -1.42
LIMD1-201ENST00000273317 CCL18P55774 89 aa6.18□□□□□ -1.42
LIMD1-201ENST00000273317 CTSGP08311 255 aa6.18□□□□□ -1.42
LIMD1-201ENST00000273317 FXYD2P54710 66 aa6.18□□□□□ -1.42
LIMD1-201ENST00000273317 SEC61GP60059 68 aa6.18□□□□□ -1.42
LIMD1-201ENST00000273317 IGHV4-59P01825 116 aa6.18□□□□□ -1.42
LIMD1-201ENST00000273317 DIAPH2-AS1Q14236 149 aa6.18□□□□□ -1.42
LIMD1-201ENST00000273317 PLA2G2CQ5R387 149 aa6.18□□□□□ -1.42
LIMD1-201ENST00000273317 MIAQ16674 131 aa6.17□□□□□ -1.42
LIMD1-201ENST00000273317 A0A0J9YWU9 116 aa6.17□□□□□ -1.42
LIMD1-201ENST00000273317 ARTNQ5T4W7 220 aa6.17□□□□□ -1.42
LIMD1-201ENST00000273317 FGF23Q9GZV9 251 aaPredicted RBP6.17□□□□□ -1.42
LIMD1-201ENST00000273317 A0A0J9YY99 117 aa6.17□□□□□ -1.42
LIMD1-201ENST00000273317 LINC00643Q86TS7 51 aa6.17□□□□□ -1.42
LIMD1-201ENST00000273317 GPHB5Q86YW7 130 aa6.17□□□□□ -1.42
LIMD1-201ENST00000273317 SLX1AQ9BQ83 275 aa6.17□□□□□ -1.42
LIMD1-201ENST00000273317 UBE2AP49459 152 aa6.17□□□□□ -1.42
LIMD1-201ENST00000273317 PIP4P1Q86T03 277 aa6.17□□□□□ -1.42
LIMD1-201ENST00000273317 C5orf56Q8N8D9 126 aa6.17□□□□□ -1.42
LIMD1-201ENST00000273317 MDFICQ9P1T7 246 aa6.17□□□□□ -1.42
LIMD1-201ENST00000273317 ODF3Q96PU9 254 aa6.17□□□□□ -1.42
LIMD1-201ENST00000273317 HIGD2BQ4VC39 106 aa6.17□□□□□ -1.42
LIMD1-201ENST00000273317 GTSF1Q8WW33 167 aa6.17□□□□□ -1.42
LIMD1-201ENST00000273317 COX7BP24311 80 aa6.16□□□□□ -1.42
LIMD1-201ENST00000273317 RAI1Q7Z5J4 1906 aaPredicted RBP6.16□□□□□ -1.42
LIMD1-201ENST00000273317 SPATA12Q7Z6I5 190 aa6.16□□□□□ -1.42
LIMD1-201ENST00000273317 C5orf38Q86SI9 138 aa6.16□□□□□ -1.42
LIMD1-201ENST00000273317 PRRC2CQ9Y520 2896 aaKnown RBP6.16□□□□□ -1.42
LIMD1-201ENST00000273317 H7C423 109 aa6.16□□□□□ -1.42
LIMD1-201ENST00000273317 A0A0J9YXV3 536 aa6.16□□□□□ -1.42
LIMD1-201ENST00000273317 GATA1P15976 413 aaPredicted RBP6.16□□□□□ -1.42
LIMD1-201ENST00000273317 NDUFA11Q86Y39 141 aa6.16□□□□□ -1.42
LIMD1-201ENST00000273317 TMEM263Q8WUH6 116 aaKnown RBP6.16□□□□□ -1.42
LIMD1-201ENST00000273317 IGLV2-23P01705 113 aa6.16□□□□□ -1.42
LIMD1-201ENST00000273317 B9D2Q9BPU9 175 aa6.16□□□□□ -1.42
LIMD1-201ENST00000273317 SLURP1P55000 103 aa6.16□□□□□ -1.42
LIMD1-201ENST00000273317 DAND5Q8N907 189 aa6.15□□□□□ -1.42
LIMD1-201ENST00000273317 ZFHX2Q9C0A1 2572 aaPredicted RBP6.15□□□□□ -1.42
LIMD1-201ENST00000273317 C2orf70A6NJV1 201 aa6.15□□□□□ -1.42
LIMD1-201ENST00000273317 MRPL55Q7Z7F7 128 aaKnown RBP6.15□□□□□ -1.42
LIMD1-201ENST00000273317 CTSZQ9UBR2 303 aa6.15□□□□□ -1.42
LIMD1-201ENST00000273317 KIR2DL5BQ8NHK3 375 aa6.15□□□□□ -1.42
LIMD1-201ENST00000273317 TRBV10-1A0A0K0K1A3 114 aa6.15□□□□□ -1.43
LIMD1-201ENST00000273317 PRSS33Q8NF86 280 aa6.15□□□□□ -1.43
LIMD1-201ENST00000273317 NCR3O14931 201 aa6.15□□□□□ -1.43
LIMD1-201ENST00000273317 NDUFV3P56181 108 aaKnown RBP6.15□□□□□ -1.43
LIMD1-201ENST00000273317 DEFB112Q30KQ8 113 aa6.15□□□□□ -1.43
LIMD1-201ENST00000273317 LINC00173Q6ZV60 143 aa6.15□□□□□ -1.43
LIMD1-201ENST00000273317 UPK3BQ9BT76 320 aa6.15□□□□□ -1.43
LIMD1-201ENST00000273317 TEX22C9J3V5 150 aa6.15□□□□□ -1.43
LIMD1-201ENST00000273317 LECT2O14960 151 aa6.15□□□□□ -1.43
LIMD1-201ENST00000273317 Q9HAA7 133 aa6.15□□□□□ -1.43
LIMD1-201ENST00000273317 ADAMTS20P59510 1910 aa6.15□□□□□ -1.43
LIMD1-201ENST00000273317 RNF138Q8WVD3 245 aa6.15□□□□□ -1.43
LIMD1-201ENST00000273317 NOTCH2Q04721 2471 aa6.14□□□□□ -1.43
LIMD1-201ENST00000273317 A0A0J9YXY3 114 aa6.14□□□□□ -1.43
LIMD1-201ENST00000273317 HHLA3Q9XRX5 114 aa6.14□□□□□ -1.43
LIMD1-201ENST00000273317 WFDC2Q14508 124 aa6.14□□□□□ -1.43
LIMD1-201ENST00000273317 MAPK1IP1LQ8NDC0 245 aa6.14□□□□□ -1.43
LIMD1-201ENST00000273317 PATE2Q6UY27 113 aa6.14□□□□□ -1.43
LIMD1-201ENST00000273317 WFDC11Q8NEX6 87 aa6.14□□□□□ -1.43
LIMD1-201ENST00000273317 J3QKU1 62 aa6.14□□□□□ -1.43
LIMD1-201ENST00000273317 C4orf48Q5BLP8 95 aa6.14□□□□□ -1.43
LIMD1-201ENST00000273317 Q6ZUT4 128 aa6.14□□□□□ -1.43
LIMD1-201ENST00000273317 PKD1L2Q7Z442 2459 aa6.14□□□□□ -1.43
LIMD1-201ENST00000273317 CLEC2BQ92478 149 aa6.14□□□□□ -1.43
LIMD1-201ENST00000273317 WISP1O95388 367 aa6.14□□□□□ -1.43
LIMD1-201ENST00000273317 RPL39P62891 51 aaKnown RBP6.14□□□□□ -1.43
LIMD1-201ENST00000273317 SPAG11BQ08648 103 aa6.14□□□□□ -1.43
LIMD1-201ENST00000273317 DEFB136Q30KP8 78 aa6.14□□□□□ -1.43
LIMD1-201ENST00000273317 AJUBAQ96IF1 538 aa6.14□□□□□ -1.43
LIMD1-201ENST00000273317 IGHV4-30-2A0A087WSY4 118 aa6.13□□□□□ -1.43
LIMD1-201ENST00000273317 UFSP1Q6NVU6 142 aa6.13□□□□□ -1.43
LIMD1-201ENST00000273317 C19orf71A6NCJ1 209 aa6.13□□□□□ -1.43
LIMD1-201ENST00000273317 LOXL1Q08397 574 aaPredicted RBP6.13□□□□□ -1.43
LIMD1-201ENST00000273317 COL4A4P53420 1690 aaPredicted RBP6.13□□□□□ -1.43
LIMD1-201ENST00000273317 COL5A1P20908 1838 aaPredicted RBP6.13□□□□□ -1.43
LIMD1-201ENST00000273317 F8W735 103 aaPredicted RBP6.13□□□□□ -1.43
LIMD1-201ENST00000273317 IGLV10-54A0A075B6I4 117 aa6.13□□□□□ -1.43
LIMD1-201ENST00000273317 TRAV26-1A0A087WT03 109 aa6.13□□□□□ -1.43
LIMD1-201ENST00000273317 IGFL2Q6UWQ7 119 aa6.13□□□□□ -1.43
LIMD1-201ENST00000273317 RNASE8Q8TDE3 154 aaKnown RBP6.13□□□□□ -1.43
LIMD1-201ENST00000273317 A0A1B0GXF2 115 aa6.12□□□□□ -1.43
LIMD1-201ENST00000273317 V9GYY9 64 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms