RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 DEFB131AP59861 70 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 C3orf22Q8N5N4 141 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 ZNF525Q8N782 197 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 RHPN1-AS1Q9BWJ2 59 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 IGHV3OR16-10A0A075B7F0 116 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 PATE4P0C8F1 98 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 COX6A1P12074 109 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 CHCHD2P9Q5T1J5 151 aaPredicted RBP2.23□□□□□ -2.05
SCN1A-219ENST00000641575 PSG8Q9UQ74 426 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 LENEPQ9Y5L5 61 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 MIFP14174 115 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 R3HDMLQ9H3Y0 253 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 TRBV19A0A075B6N1 114 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP2.23□□□□□ -2.05
SCN1A-219ENST00000641575 COX7A2LO14548 114 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 SIVA1O15304 175 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 IGHV3-23P01764 117 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 NANOS3P60323 173 aaKnown RBP2.23□□□□□ -2.05
SCN1A-219ENST00000641575 RPL39P5Q59GN2 51 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 Q6ZS92 163 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 SEM1Q6ZVN7 128 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 FAM216BQ8N7L0 139 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 YPEL4Q96NS1 127 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 NDUFC1O43677 76 aa2.22□□□□□ -2.05
SCN1A-219ENST00000641575 C1orf100Q5SVJ3 147 aa2.22□□□□□ -2.05
SCN1A-219ENST00000641575 MRPS36P82909 103 aaKnown RBP2.22□□□□□ -2.05
SCN1A-219ENST00000641575 PRO0255Q9UI72 69 aa2.22□□□□□ -2.05
SCN1A-219ENST00000641575 UPK3BQ9BT76 320 aa2.22□□□□□ -2.05
SCN1A-219ENST00000641575 CELA2AP08217 269 aa2.22□□□□□ -2.05
SCN1A-219ENST00000641575 LEAP2Q969E1 77 aa2.22□□□□□ -2.05
SCN1A-219ENST00000641575 Q6ZUT4 128 aa2.22□□□□□ -2.05
SCN1A-219ENST00000641575 K7EM74 188 aa2.22□□□□□ -2.05
SCN1A-219ENST00000641575 IGHV1-8P0DP01 117 aa2.22□□□□□ -2.05
SCN1A-219ENST00000641575 AMTNQ6UX39 209 aa2.22□□□□□ -2.05
SCN1A-219ENST00000641575 SDIM1Q6ZPB5 146 aa2.22□□□□□ -2.05
SCN1A-219ENST00000641575 SERP2Q8N6R1 65 aa2.22□□□□□ -2.05
SCN1A-219ENST00000641575 CENPVL1A0A0U1RR11 272 aa2.22□□□□□ -2.05
SCN1A-219ENST00000641575 C12orf74Q32Q52 190 aa2.22□□□□□ -2.05
SCN1A-219ENST00000641575 IGF2-ASQ6U949 168 aa2.22□□□□□ -2.05
SCN1A-219ENST00000641575 TMEM105Q8N8V8 129 aa2.22□□□□□ -2.05
SCN1A-219ENST00000641575 RTBDNQ9BSG5 229 aaPredicted RBP2.22□□□□□ -2.05
SCN1A-219ENST00000641575 IGHV3-73A0A0B4J1V6 119 aa2.22□□□□□ -2.05
SCN1A-219ENST00000641575 SMKR1H3BMG3 65 aa2.22□□□□□ -2.05
SCN1A-219ENST00000641575 RPL28P46779 137 aaKnown RBP2.22□□□□□ -2.05
SCN1A-219ENST00000641575 SRRM5B3KS81 715 aa2.22□□□□□ -2.05
SCN1A-219ENST00000641575 NREPQ16612 68 aa2.22□□□□□ -2.05
SCN1A-219ENST00000641575 RNASE8Q8TDE3 154 aaKnown RBP2.22□□□□□ -2.05
SCN1A-219ENST00000641575 GPHA2Q96T91 129 aa2.22□□□□□ -2.05
SCN1A-219ENST00000641575 C1orf158Q8N1D5 194 aa2.21□□□□□ -2.05
SCN1A-219ENST00000641575 NTN5Q8WTR8 489 aaPredicted RBP2.21□□□□□ -2.05
SCN1A-219ENST00000641575 COL4A4P53420 1690 aaPredicted RBP2.21□□□□□ -2.06
SCN1A-219ENST00000641575 IGLV3-16A0A075B6K0 115 aa2.21□□□□□ -2.06
SCN1A-219ENST00000641575 IGHV3-35A0A0C4DH35 117 aa2.21□□□□□ -2.06
SCN1A-219ENST00000641575 A0A1B0GTL3 188 aa2.21□□□□□ -2.06
SCN1A-219ENST00000641575 H0YIZ8 118 aa2.21□□□□□ -2.06
SCN1A-219ENST00000641575 H7C423 109 aa2.21□□□□□ -2.06
SCN1A-219ENST00000641575 SH2D1AO60880 128 aa2.21□□□□□ -2.06
SCN1A-219ENST00000641575 TMEM219Q86XT9 240 aa2.21□□□□□ -2.06
SCN1A-219ENST00000641575 PCP2Q8IVA1 136 aa2.21□□□□□ -2.06
SCN1A-219ENST00000641575 C14orf178Q8N769 122 aaPredicted RBP2.21□□□□□ -2.06
SCN1A-219ENST00000641575 TRGV9Q99603 122 aa2.21□□□□□ -2.06
SCN1A-219ENST00000641575 NPYP01303 97 aa2.21□□□□□ -2.06
SCN1A-219ENST00000641575 COL18A1P39060 1754 aa2.21□□□□□ -2.06
SCN1A-219ENST00000641575 LRCOL1A6NCL2 159 aa2.21□□□□□ -2.06
SCN1A-219ENST00000641575 GATA1P15976 413 aaPredicted RBP2.21□□□□□ -2.06
SCN1A-219ENST00000641575 C18orf32Q8TCD1 76 aa2.21□□□□□ -2.06
SCN1A-219ENST00000641575 C4orf3Q8WVX3 66 aa2.21□□□□□ -2.06
SCN1A-219ENST00000641575 KLK9Q9UKQ9 250 aa2.21□□□□□ -2.06
SCN1A-219ENST00000641575 E9PLD3 99 aa2.21□□□□□ -2.06
SCN1A-219ENST00000641575 UQCRQO14949 82 aa2.21□□□□□ -2.06
SCN1A-219ENST00000641575 C1QCP02747 245 aa2.21□□□□□ -2.06
SCN1A-219ENST00000641575 PMAIP1Q13794 54 aa2.21□□□□□ -2.06
SCN1A-219ENST00000641575 S4R3C0 116 aa2.21□□□□□ -2.06
SCN1A-219ENST00000641575 IGKV2-40A0A087WW87 121 aaPredicted RBP2.21□□□□□ -2.06
SCN1A-219ENST00000641575 IGKV2D-40P01614 121 aaPredicted RBP2.21□□□□□ -2.06
SCN1A-219ENST00000641575 LYPD6Q86Y78 171 aa2.21□□□□□ -2.06
SCN1A-219ENST00000641575 PRSS33Q8NF86 280 aa2.21□□□□□ -2.06
SCN1A-219ENST00000641575 HS3ST6Q96QI5 342 aa2.21□□□□□ -2.06
SCN1A-219ENST00000641575 FAM110AQ9BQ89 295 aa2.21□□□□□ -2.06
SCN1A-219ENST00000641575 IGLC1P0CG04 106 aa2.21□□□□□ -2.06
SCN1A-219ENST00000641575 Q6ZVQ6 151 aa2.21□□□□□ -2.06
SCN1A-219ENST00000641575 C20orf197Q8N268 126 aa2.21□□□□□ -2.06
SCN1A-219ENST00000641575 COL5A3P25940 1745 aaPredicted RBP2.21□□□□□ -2.06
SCN1A-219ENST00000641575 A0A087WZ39 114 aa2.21□□□□□ -2.06
SCN1A-219ENST00000641575 Q0VFX4 171 aa2.21□□□□□ -2.06
SCN1A-219ENST00000641575 TNS1Q9HBL0 1735 aaKnown RBP2.21□□□□□ -2.06
SCN1A-219ENST00000641575 Q8N8P6 123 aa2.21□□□□□ -2.06
SCN1A-219ENST00000641575 SLC25A29Q8N8R3 303 aa2.21□□□□□ -2.06
SCN1A-219ENST00000641575 NRACQ8N912 160 aa2.21□□□□□ -2.06
SCN1A-219ENST00000641575 ZNF73O43830 326 aaPredicted RBP2.21□□□□□ -2.06
SCN1A-219ENST00000641575 DCANP1Q8TF63 244 aa2.21□□□□□ -2.06
SCN1A-219ENST00000641575 FGF23Q9GZV9 251 aaPredicted RBP2.21□□□□□ -2.06
SCN1A-219ENST00000641575 IGHV1-3A0A0C4DH29 117 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 PLA2G2AP14555 144 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 RNF126Q9BV68 326 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 U3KQK5 164 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 MXRA5Q9NR99 2828 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 DEFB131BA0A096LNP1 70 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 LGALS9CQ6DKI2 356 aa2.2□□□□□ -2.06
SCN1A-219ENST00000641575 COX7B2Q8TF08 81 aa2.2□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms