RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 K7EMT4 169 aa4.79□□□□□ -1.64
SCN1A-217ENST00000637988 MORN5Q5VZ52 161 aa4.79□□□□□ -1.64
SCN1A-217ENST00000637988 TINCRA0A1B0GVN0 87 aa4.78□□□□□ -1.64
SCN1A-217ENST00000637988 NPSP0C0P6 89 aa4.78□□□□□ -1.64
SCN1A-217ENST00000637988 BLCAPP62952 87 aa4.78□□□□□ -1.64
SCN1A-217ENST00000637988 AJUBAQ96IF1 538 aa4.78□□□□□ -1.64
SCN1A-217ENST00000637988 BDP1A6H8Y1 2624 aa4.78□□□□□ -1.64
SCN1A-217ENST00000637988 MRPL51Q4U2R6 128 aaKnown RBP4.78□□□□□ -1.64
SCN1A-217ENST00000637988 KLHDC3Q9BQ90 382 aa4.78□□□□□ -1.64
SCN1A-217ENST00000637988 TEX22C9J3V5 150 aa4.78□□□□□ -1.64
SCN1A-217ENST00000637988 LRRK2Q5S007 2527 aa4.78□□□□□ -1.64
SCN1A-217ENST00000637988 K7EM74 188 aa4.78□□□□□ -1.64
SCN1A-217ENST00000637988 MIFP14174 115 aa4.78□□□□□ -1.64
SCN1A-217ENST00000637988 IGKV2D-26A0A0A0MRZ7 120 aa4.78□□□□□ -1.64
SCN1A-217ENST00000637988 IGHV4-31P0DP07 118 aa4.78□□□□□ -1.64
SCN1A-217ENST00000637988 ANKRD39Q53RE8 183 aa4.78□□□□□ -1.64
SCN1A-217ENST00000637988 PRO1854Q9UHT4 67 aa4.78□□□□□ -1.64
SCN1A-217ENST00000637988 IGKV1D-8A0A087WSZ0 117 aa4.78□□□□□ -1.64
SCN1A-217ENST00000637988 TMEM213A2RRL7 107 aa4.78□□□□□ -1.64
SCN1A-217ENST00000637988 H0YGX0 51 aa4.78□□□□□ -1.64
SCN1A-217ENST00000637988 GNRH2O43555 120 aa4.78□□□□□ -1.64
SCN1A-217ENST00000637988 HLA-DMBP28068 263 aa4.78□□□□□ -1.64
SCN1A-217ENST00000637988 J3QQQ9 107 aa4.77□□□□□ -1.65
SCN1A-217ENST00000637988 DEFB125Q8N687 156 aa4.77□□□□□ -1.65
SCN1A-217ENST00000637988 TRAV26-1A0A087WT03 109 aa4.77□□□□□ -1.65
SCN1A-217ENST00000637988 F8VRH5 84 aa4.77□□□□□ -1.65
SCN1A-217ENST00000637988 KIR3DS1Q14943 382 aa4.77□□□□□ -1.65
SCN1A-217ENST00000637988 ANKRD29Q8N6D5 301 aa4.77□□□□□ -1.65
SCN1A-217ENST00000637988 Q6ZR03 302 aa4.77□□□□□ -1.65
SCN1A-217ENST00000637988 J3QRE1 110 aa4.77□□□□□ -1.65
SCN1A-217ENST00000637988 CCL25O15444 150 aa4.77□□□□□ -1.65
SCN1A-217ENST00000637988 IGLL1P15814 213 aa4.77□□□□□ -1.65
SCN1A-217ENST00000637988 ZNF664Q8N3J9 261 aa4.77□□□□□ -1.65
SCN1A-217ENST00000637988 CARD19Q96LW7 228 aa4.77□□□□□ -1.65
SCN1A-217ENST00000637988 SPANXCQ9NY87 97 aa4.77□□□□□ -1.65
SCN1A-217ENST00000637988 ACACBO00763 2458 aa4.77□□□□□ -1.65
SCN1A-217ENST00000637988 LINC00205P59089 165 aa4.77□□□□□ -1.65
SCN1A-217ENST00000637988 SMIM27A0A1W2PRY6 76 aa4.77□□□□□ -1.65
SCN1A-217ENST00000637988 MLANAQ16655 118 aa4.77□□□□□ -1.65
SCN1A-217ENST00000637988 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-217ENST00000637988 A0A087X0K7 114 aa4.76□□□□□ -1.65
SCN1A-217ENST00000637988 LINC00322Q6ZN03 302 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-217ENST00000637988 LHFPL1Q86WI0 220 aa4.76□□□□□ -1.65
SCN1A-217ENST00000637988 SND1-IT1Q9HBX3 110 aa4.76□□□□□ -1.65
SCN1A-217ENST00000637988 WFDC1Q9HC57 220 aa4.76□□□□□ -1.65
SCN1A-217ENST00000637988 IGKV1-17P01599 117 aa4.76□□□□□ -1.65
SCN1A-217ENST00000637988 Q6ZVH6 145 aa4.76□□□□□ -1.65
SCN1A-217ENST00000637988 FGF23Q9GZV9 251 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-217ENST00000637988 RNF222A6NCQ9 220 aa4.76□□□□□ -1.65
SCN1A-217ENST00000637988 NCR3O14931 201 aa4.76□□□□□ -1.65
SCN1A-217ENST00000637988 C16orf54Q6UWD8 224 aa4.76□□□□□ -1.65
SCN1A-217ENST00000637988 NAA38Q9BRA0 125 aaKnown RBP4.76□□□□□ -1.65
SCN1A-217ENST00000637988 CPAMD8Q8IZJ3 1885 aa4.76□□□□□ -1.65
SCN1A-217ENST00000637988 M0R2N4 97 aa4.76□□□□□ -1.65
SCN1A-217ENST00000637988 IGLC1P0CG04 106 aa4.76□□□□□ -1.65
SCN1A-217ENST00000637988 UBE2D2P62837 147 aa4.76□□□□□ -1.65
SCN1A-217ENST00000637988 TPSG1Q9NRR2 321 aa4.76□□□□□ -1.65
SCN1A-217ENST00000637988 IGHV7-81A0A0B4J1V7 117 aa4.76□□□□□ -1.65
SCN1A-217ENST00000637988 FBXL19-AS1Q494R0 122 aa4.76□□□□□ -1.65
SCN1A-217ENST00000637988 IFITM1P13164 125 aa4.75□□□□□ -1.65
SCN1A-217ENST00000637988 Q6YL49 198 aa4.75□□□□□ -1.65
SCN1A-217ENST00000637988 UPK3BQ9BT76 320 aa4.75□□□□□ -1.65
SCN1A-217ENST00000637988 C15orf65H3BRN8 121 aa4.75□□□□□ -1.65
SCN1A-217ENST00000637988 TMEM256-PLSCR3K7ERE1 68 aa4.75□□□□□ -1.65
SCN1A-217ENST00000637988 SIVA1O15304 175 aa4.75□□□□□ -1.65
SCN1A-217ENST00000637988 WT1-ASQ06250 92 aa4.75□□□□□ -1.65
SCN1A-217ENST00000637988 ZNF491Q8N8L2 437 aa4.75□□□□□ -1.65
SCN1A-217ENST00000637988 BAALC-AS2P0C853 105 aa4.75□□□□□ -1.65
SCN1A-217ENST00000637988 FAM236DA0A1B0GTK5 79 aa4.75□□□□□ -1.65
SCN1A-217ENST00000637988 FAM236CP0DP71 79 aa4.75□□□□□ -1.65
SCN1A-217ENST00000637988 PRR15LQ9BU68 103 aa4.75□□□□□ -1.65
SCN1A-217ENST00000637988 TRBV10-2A0A0K0K1G8 114 aa4.74□□□□□ -1.65
SCN1A-217ENST00000637988 GAGE12HA6NDE8 117 aa4.74□□□□□ -1.65
SCN1A-217ENST00000637988 HIGD2AQ9BW72 106 aa4.74□□□□□ -1.65
SCN1A-217ENST00000637988 SS18L2Q9UHA2 77 aa4.74□□□□□ -1.65
SCN1A-217ENST00000637988 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-217ENST00000637988 FAM19A1Q7Z5A9 133 aa4.74□□□□□ -1.65
SCN1A-217ENST00000637988 ALPK3Q96L96 1907 aa4.74□□□□□ -1.65
SCN1A-217ENST00000637988 TRBV24-1A0A075B6N3 115 aa4.74□□□□□ -1.65
SCN1A-217ENST00000637988 PDE6GP18545 87 aa4.74□□□□□ -1.65
SCN1A-217ENST00000637988 LY6G6FQ5SQ64 297 aa4.74□□□□□ -1.65
SCN1A-217ENST00000637988 JMJD7-PLA2G4BH0Y9G9 81 aa4.74□□□□□ -1.65
SCN1A-217ENST00000637988 TNFRSF13BO14836 293 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-217ENST00000637988 Q5BKY6 102 aa4.74□□□□□ -1.65
SCN1A-217ENST00000637988 WFDC11Q8NEX6 87 aa4.74□□□□□ -1.65
SCN1A-217ENST00000637988 LYPD6BQ8NI32 183 aa4.74□□□□□ -1.65
SCN1A-217ENST00000637988 GTSF1LQ9H1H1 148 aa4.74□□□□□ -1.65
SCN1A-217ENST00000637988 IGLV2-18A0A075B6J9 118 aa4.74□□□□□ -1.65
SCN1A-217ENST00000637988 COX7BP24311 80 aa4.74□□□□□ -1.65
SCN1A-217ENST00000637988 SPATA12Q7Z6I5 190 aa4.74□□□□□ -1.65
SCN1A-217ENST00000637988 CUL9Q8IWT3 2517 aa4.74□□□□□ -1.65
SCN1A-217ENST00000637988 QRFPP83859 136 aa4.74□□□□□ -1.65
SCN1A-217ENST00000637988 CD300CQ08708 224 aa4.74□□□□□ -1.65
SCN1A-217ENST00000637988 UFSP1Q6NVU6 142 aa4.74□□□□□ -1.65
SCN1A-217ENST00000637988 H7C423 109 aa4.73□□□□□ -1.65
SCN1A-217ENST00000637988 HIST1H2BKO60814 126 aa4.73□□□□□ -1.65
SCN1A-217ENST00000637988 TCL1BO95988 128 aa4.73□□□□□ -1.65
SCN1A-217ENST00000637988 HIST1H2BJP06899 126 aa4.73□□□□□ -1.65
SCN1A-217ENST00000637988 HIST1H2BOP23527 126 aa4.73□□□□□ -1.65
SCN1A-217ENST00000637988 HIST1H2BBP33778 126 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms