RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 A0A087WWL8 130 aa7.89□□□□□ -1.15
CLN3-257ENST00000637110 IGHV3-38A0A0C4DH36 116 aa7.89□□□□□ -1.15
CLN3-257ENST00000637110 RHODO00212 210 aa7.89□□□□□ -1.15
CLN3-257ENST00000637110 IFNA1P01562 189 aa7.89□□□□□ -1.15
CLN3-257ENST00000637110 IGHV3-30P01768 117 aa7.89□□□□□ -1.15
CLN3-257ENST00000637110 IGHV3-33P01772 117 aa7.89□□□□□ -1.15
CLN3-257ENST00000637110 C1QBP02746 253 aa7.89□□□□□ -1.15
CLN3-257ENST00000637110 DNAH10OSP0CZ25 163 aa7.89□□□□□ -1.15
CLN3-257ENST00000637110 IGHV3-30-3P0DP02 117 aa7.89□□□□□ -1.15
CLN3-257ENST00000637110 IGHV3-30-5P0DP03 117 aa7.89□□□□□ -1.15
CLN3-257ENST00000637110 SULT1A2P50226 295 aa7.89□□□□□ -1.15
CLN3-257ENST00000637110 TIRAPP58753 221 aa7.89□□□□□ -1.15
CLN3-257ENST00000637110 ERVFC1-1P60608 527 aa7.89□□□□□ -1.15
CLN3-257ENST00000637110 SSTP61278 116 aa7.89□□□□□ -1.15
CLN3-257ENST00000637110 RPL19P84098 196 aaKnown RBP7.89□□□□□ -1.15
CLN3-257ENST00000637110 PIK3CD-AS1Q5SR53 167 aa7.89□□□□□ -1.15
CLN3-257ENST00000637110 DNLZQ5SXM8 178 aa7.89□□□□□ -1.15
CLN3-257ENST00000637110 SLC51BQ86UW2 128 aa7.89□□□□□ -1.15
CLN3-257ENST00000637110 C10orf126Q8N4M7 172 aa7.89□□□□□ -1.15
CLN3-257ENST00000637110 FRZBQ92765 325 aa7.89□□□□□ -1.15
CLN3-257ENST00000637110 GTSF1LQ9H1H1 148 aa7.89□□□□□ -1.15
CLN3-257ENST00000637110 FLG2Q5D862 2391 aaPredicted RBP7.88□□□□□ -1.15
CLN3-257ENST00000637110 TRAV1-1A0A0B4J248 108 aa7.88□□□□□ -1.15
CLN3-257ENST00000637110 K7EP13 123 aa7.88□□□□□ -1.15
CLN3-257ENST00000637110 RPL35P42766 123 aaKnown RBP7.88□□□□□ -1.15
CLN3-257ENST00000637110 LELP1Q5T871 98 aa7.88□□□□□ -1.15
CLN3-257ENST00000637110 C14orf178Q8N769 122 aaPredicted RBP7.88□□□□□ -1.15
CLN3-257ENST00000637110 DAZAP1Q96EP5 407 aaKnown RBP7.88□□□□□ -1.15
CLN3-257ENST00000637110 SFRP2Q96HF1 295 aa7.88□□□□□ -1.15
CLN3-257ENST00000637110 MYCBP2O75592 4640 aa7.87□□□□□ -1.15
CLN3-257ENST00000637110 MUC21A0A0G2JKD1 596 aa7.87□□□□□ -1.15
CLN3-257ENST00000637110 MUC21A0A140T8X8 626 aa7.87□□□□□ -1.15
CLN3-257ENST00000637110 J3QL48 77 aa7.87□□□□□ -1.15
CLN3-257ENST00000637110 PSCAO43653 123 aa7.87□□□□□ -1.15
CLN3-257ENST00000637110 Q5VSD8 79 aa7.87□□□□□ -1.15
CLN3-257ENST00000637110 SPANXN1Q5VSR9 72 aa7.87□□□□□ -1.15
CLN3-257ENST00000637110 MED9Q9NWA0 146 aa7.87□□□□□ -1.15
CLN3-257ENST00000637110 BOLA1Q9Y3E2 137 aa7.87□□□□□ -1.15
CLN3-257ENST00000637110 CENPWQ5EE01 88 aa7.86□□□□□ -1.15
CLN3-257ENST00000637110 LINC01556Q5JQF7 62 aa7.86□□□□□ -1.15
CLN3-257ENST00000637110 Q6ZRN7 208 aaPredicted RBP7.86□□□□□ -1.15
CLN3-257ENST00000637110 DERL1Q9BUN8 251 aa7.86□□□□□ -1.15
CLN3-257ENST00000637110 MLST8Q9BVC4 326 aa7.86□□□□□ -1.15
CLN3-257ENST00000637110 Q9HAA7 133 aa7.86□□□□□ -1.15
CLN3-257ENST00000637110 RAB19A4D1S5 217 aa7.85□□□□□ -1.15
CLN3-257ENST00000637110 F5H697 171 aa7.85□□□□□ -1.15
CLN3-257ENST00000637110 PDE6DO43924 150 aa7.85□□□□□ -1.15
CLN3-257ENST00000637110 GNG4P50150 75 aa7.85□□□□□ -1.15
CLN3-257ENST00000637110 KRTAP10-2P60368 255 aa7.85□□□□□ -1.15
CLN3-257ENST00000637110 MEF2BQ02080 365 aaPredicted RBP7.85□□□□□ -1.15
CLN3-257ENST00000637110 ZNF56Q15929 161 aa7.85□□□□□ -1.15
CLN3-257ENST00000637110 UFSP1Q6NVU6 142 aa7.85□□□□□ -1.15
CLN3-257ENST00000637110 OR10AG1Q8NH19 301 aa7.85□□□□□ -1.15
CLN3-257ENST00000637110 C11orf52Q96A22 123 aa7.85□□□□□ -1.15
CLN3-257ENST00000637110 TPPP3Q9BW30 176 aa7.85□□□□□ -1.15
CLN3-257ENST00000637110 A0A087WWC5 75 aa7.84□□□□□ -1.15
CLN3-257ENST00000637110 CXCL1P09341 107 aa7.84□□□□□ -1.15
CLN3-257ENST00000637110 SMIM17P0DL12 118 aa7.84□□□□□ -1.15
CLN3-257ENST00000637110 BCL2P10415 239 aa7.84□□□□□ -1.15
CLN3-257ENST00000637110 FUSP35637 526 aaKnown RBP eCLIP7.84□□□□□ -1.15
CLN3-257ENST00000637110 RPL36AP83881 106 aaKnown RBP7.84□□□□□ -1.15
CLN3-257ENST00000637110 RPL36ALQ969Q0 106 aaKnown RBP7.84□□□□□ -1.15
CLN3-257ENST00000637110 Q9UF83 564 aa7.84□□□□□ -1.15
CLN3-257ENST00000637110 VAX2Q9UIW0 290 aa7.84□□□□□ -1.15
CLN3-257ENST00000637110 URGCP-MRPS24S4R325 110 aa7.84□□□□□ -1.15
CLN3-257ENST00000637110 A0A087WTM6 91 aa7.83□□□□□ -1.16
CLN3-257ENST00000637110 RPS20P60866 119 aaKnown RBP7.83□□□□□ -1.16
CLN3-257ENST00000637110 C9orf62Q8N4C0 152 aa7.83□□□□□ -1.16
CLN3-257ENST00000637110 OR2D3Q8NGH3 330 aa7.83□□□□□ -1.16
CLN3-257ENST00000637110 PGPEP1Q9NXJ5 209 aa7.83□□□□□ -1.16
CLN3-257ENST00000637110 IBA57-AS1B1ANH7 110 aa7.82□□□□□ -1.16
CLN3-257ENST00000637110 GZMBP10144 247 aa7.82□□□□□ -1.16
CLN3-257ENST00000637110 TAGLN2P37802 199 aaKnown RBP7.82□□□□□ -1.16
CLN3-257ENST00000637110 KCNIP4Q6PIL6 250 aa7.82□□□□□ -1.16
CLN3-257ENST00000637110 ALKAL2Q6UX46 152 aa7.82□□□□□ -1.16
CLN3-257ENST00000637110 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.82□□□□□ -1.16
CLN3-257ENST00000637110 BIN3Q9NQY0 253 aa7.82□□□□□ -1.16
CLN3-257ENST00000637110 TRBV10-1A0A0K0K1A3 114 aa7.81□□□□□ -1.16
CLN3-257ENST00000637110 XKRY2A2RUG3 117 aa7.81□□□□□ -1.16
CLN3-257ENST00000637110 RBFOX3A6NFN3 312 aa7.81□□□□□ -1.16
CLN3-257ENST00000637110 SNAI2O43623 268 aa7.81□□□□□ -1.16
CLN3-257ENST00000637110 P01737 135 aa7.81□□□□□ -1.16
CLN3-257ENST00000637110 OR5AL1P0C617 328 aa7.81□□□□□ -1.16
CLN3-257ENST00000637110 LINC00694P0DN24 101 aa7.81□□□□□ -1.16
CLN3-257ENST00000637110 RAB4BP61018 213 aa7.81□□□□□ -1.16
CLN3-257ENST00000637110 BLOC1S1P78537 153 aa7.81□□□□□ -1.16
CLN3-257ENST00000637110 TRBV7-3A0A075B6L6 115 aa7.8□□□□□ -1.16
CLN3-257ENST00000637110 TMEM262E9PQX1 116 aa7.8□□□□□ -1.16
CLN3-257ENST00000637110 IGLV2-8P01709 118 aa7.8□□□□□ -1.16
CLN3-257ENST00000637110 MGPP08493 103 aa7.8□□□□□ -1.16
CLN3-257ENST00000637110 TOR2AQ5JU69 321 aa7.8□□□□□ -1.16
CLN3-257ENST00000637110 DAZ4Q86SG3 579 aaKnown RBP7.8□□□□□ -1.16
CLN3-257ENST00000637110 Q8N3U1 123 aa7.8□□□□□ -1.16
CLN3-257ENST00000637110 FER1L6-AS1Q8NA97 138 aa7.8□□□□□ -1.16
CLN3-257ENST00000637110 SMIM12Q96EX1 92 aa7.8□□□□□ -1.16
CLN3-257ENST00000637110 AP1S3Q96PC3 154 aa7.8□□□□□ -1.16
CLN3-257ENST00000637110 SSBP4Q9BWG4 385 aaPredicted RBP7.8□□□□□ -1.16
CLN3-257ENST00000637110 TM2D2Q9BX73 214 aa7.8□□□□□ -1.16
CLN3-257ENST00000637110 DAZ3Q9NR90 486 aaKnown RBP7.8□□□□□ -1.16
CLN3-257ENST00000637110 A0A087WX48 190 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms