RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 Q6ZUT4 128 aa11.18□□□□□ -0.62
CLN3-253ENST00000636977 CDIP1Q9H305 208 aa11.18□□□□□ -0.62
CLN3-253ENST00000636977 HIGD1BQ9P298 99 aa11.18□□□□□ -0.62
CLN3-253ENST00000636977 IGSF10Q6WRI0 2623 aa11.17□□□□□ -0.62
CLN3-253ENST00000636977 CENPEQ02224 2701 aa11.17□□□□□ -0.62
CLN3-253ENST00000636977 TRBV20-1A0A075B6N2 111 aa11.17□□□□□ -0.62
CLN3-253ENST00000636977 IGLV1-40P01703 118 aa11.17□□□□□ -0.62
CLN3-253ENST00000636977 FHL3Q13643 280 aa11.17□□□□□ -0.62
CLN3-253ENST00000636977 MSMBP08118 114 aa11.16□□□□□ -0.62
CLN3-253ENST00000636977 PHLDA1Q8WV24 401 aaPredicted RBP11.16□□□□□ -0.62
CLN3-253ENST00000636977 CITED1Q99966 193 aa11.16□□□□□ -0.62
CLN3-253ENST00000636977 IGLL5B9A064 214 aa11.16□□□□□ -0.62
CLN3-253ENST00000636977 PTH2Q96A98 100 aa11.16□□□□□ -0.62
CLN3-253ENST00000636977 TOMM6Q96B49 74 aa11.16□□□□□ -0.62
CLN3-253ENST00000636977 DAZ1Q9NQZ3 744 aaKnown RBP11.16□□□□□ -0.62
CLN3-253ENST00000636977 IGKV3-20P01619 116 aa11.16□□□□□ -0.62
CLN3-253ENST00000636977 CEND1Q8N111 149 aa11.16□□□□□ -0.62
CLN3-253ENST00000636977 DOPEY1Q5JWR5 2465 aa11.15□□□□□ -0.62
CLN3-253ENST00000636977 C2orf66Q6UXQ4 117 aa11.15□□□□□ -0.62
CLN3-253ENST00000636977 A0A087WWL8 130 aa11.15□□□□□ -0.62
CLN3-253ENST00000636977 F8VRH5 84 aa11.15□□□□□ -0.62
CLN3-253ENST00000636977 LINC00315P59091 139 aa11.15□□□□□ -0.62
CLN3-253ENST00000636977 FOXI1Q12951 378 aa11.15□□□□□ -0.62
CLN3-253ENST00000636977 NEXN-AS1Q8NBZ9 246 aa11.15□□□□□ -0.62
CLN3-253ENST00000636977 TM2D2Q9BX73 214 aa11.15□□□□□ -0.62
CLN3-253ENST00000636977 TRAV12-3A0A0B4J271 114 aa11.14□□□□□ -0.63
CLN3-253ENST00000636977 H7C1H1 209 aa11.14□□□□□ -0.63
CLN3-253ENST00000636977 IGHV4-59P01825 116 aa11.14□□□□□ -0.63
CLN3-253ENST00000636977 CFHR3Q02985 330 aa11.14□□□□□ -0.63
CLN3-253ENST00000636977 MAPK1IP1LQ8NDC0 245 aa11.14□□□□□ -0.63
CLN3-253ENST00000636977 FAM110AQ9BQ89 295 aa11.14□□□□□ -0.63
CLN3-253ENST00000636977 MYO18BQ8IUG5 2567 aa11.14□□□□□ -0.63
CLN3-253ENST00000636977 APRG1Q8IVJ8 170 aa11.14□□□□□ -0.63
CLN3-253ENST00000636977 BAALCQ8WXS3 180 aa11.14□□□□□ -0.63
CLN3-253ENST00000636977 H3BUA1 57 aa11.13□□□□□ -0.63
CLN3-253ENST00000636977 PLNP26678 52 aa11.13□□□□□ -0.63
CLN3-253ENST00000636977 EMP1P54849 157 aa11.13□□□□□ -0.63
CLN3-253ENST00000636977 ORMDL2Q53FV1 153 aa11.13□□□□□ -0.63
CLN3-253ENST00000636977 C3orf56Q8N813 242 aa11.13□□□□□ -0.63
CLN3-253ENST00000636977 DCANP1Q8TF63 244 aa11.13□□□□□ -0.63
CLN3-253ENST00000636977 KIF25-AS1Q9Y6Z4 181 aa11.13□□□□□ -0.63
CLN3-253ENST00000636977 FBN2P35556 2912 aa11.13□□□□□ -0.63
CLN3-253ENST00000636977 TRAV12-2A0A075B6T6 113 aa11.13□□□□□ -0.63
CLN3-253ENST00000636977 DUSP14O95147 198 aaKnown RBP11.13□□□□□ -0.63
CLN3-253ENST00000636977 KIR2DL4Q99706 377 aa11.13□□□□□ -0.63
CLN3-253ENST00000636977 E9PLD3 99 aa11.13□□□□□ -0.63
CLN3-253ENST00000636977 TRAV12-1A0A0B4J245 112 aa11.12□□□□□ -0.63
CLN3-253ENST00000636977 CCDC179H3BU77 68 aa11.12□□□□□ -0.63
CLN3-253ENST00000636977 ZNF688P0C7X2 276 aa11.12□□□□□ -0.63
CLN3-253ENST00000636977 HLA-DRB4P13762 266 aa11.12□□□□□ -0.63
CLN3-253ENST00000636977 HLA-DRB4X5D2U9 266 aa11.12□□□□□ -0.63
CLN3-253ENST00000636977 KLLNB2CW77 178 aa11.12□□□□□ -0.63
CLN3-253ENST00000636977 TGFAP01135 160 aa11.12□□□□□ -0.63
CLN3-253ENST00000636977 NFE4Q86UQ8 179 aa11.12□□□□□ -0.63
CLN3-253ENST00000636977 TEX29Q8N6K0 151 aa11.12□□□□□ -0.63
CLN3-253ENST00000636977 MXRA5Q9NR99 2828 aa11.11□□□□□ -0.63
CLN3-253ENST00000636977 CD7P09564 240 aa11.11□□□□□ -0.63
CLN3-253ENST00000636977 ZFAND6Q6FIF0 208 aa11.11□□□□□ -0.63
CLN3-253ENST00000636977 RPL39P62891 51 aaKnown RBP11.11□□□□□ -0.63
CLN3-253ENST00000636977 DEFB112Q30KQ8 113 aa11.11□□□□□ -0.63
CLN3-253ENST00000636977 PSMG4Q5JS54 123 aa11.11□□□□□ -0.63
CLN3-253ENST00000636977 HIST1H4GQ99525 98 aa11.11□□□□□ -0.63
CLN3-253ENST00000636977 CREBBPQ92793 2442 aa11.1□□□□□ -0.63
CLN3-253ENST00000636977 TSHBP01222 138 aa11.1□□□□□ -0.63
CLN3-253ENST00000636977 FAM159AQ6UWV7 190 aa11.1□□□□□ -0.63
CLN3-253ENST00000636977 DUX5Q96PT3 197 aa11.1□□□□□ -0.63
CLN3-253ENST00000636977 CACNA1AO00555 2505 aa11.1□□□□□ -0.63
CLN3-253ENST00000636977 CRYGDP07320 174 aa11.1□□□□□ -0.63
CLN3-253ENST00000636977 SUMO4Q6EEV6 95 aa11.1□□□□□ -0.63
CLN3-253ENST00000636977 MDFICQ9P1T7 246 aa11.1□□□□□ -0.63
CLN3-253ENST00000636977 PSMB8P28062 276 aa11.1□□□□□ -0.63
CLN3-253ENST00000636977 FAM74A4Q5TZK3 123 aa11.1□□□□□ -0.63
CLN3-253ENST00000636977 F5H697 171 aa11.09□□□□□ -0.63
CLN3-253ENST00000636977 MED14OSP0DP75 135 aa11.09□□□□□ -0.63
CLN3-253ENST00000636977 C12orf74Q32Q52 190 aa11.09□□□□□ -0.63
CLN3-253ENST00000636977 ZFYVE26Q68DK2 2539 aa11.09□□□□□ -0.63
CLN3-253ENST00000636977 MYMXA0A1B0GTQ4 84 aa11.09□□□□□ -0.63
CLN3-253ENST00000636977 NXPH4O95158 308 aa11.09□□□□□ -0.63
CLN3-253ENST00000636977 KLHL30-AS1Q8NEE0 82 aa11.09□□□□□ -0.63
CLN3-253ENST00000636977 PRADC1Q9BSG0 188 aa11.09□□□□□ -0.63
CLN3-253ENST00000636977 PRO0461Q9UI25 63 aa11.09□□□□□ -0.63
CLN3-253ENST00000636977 TRBV7-3A0A075B6L6 115 aa11.08□□□□□ -0.64
CLN3-253ENST00000636977 LOC107984156A0A0G2JMH3 177 aa11.08□□□□□ -0.64
CLN3-253ENST00000636977 LGALS1P09382 135 aaKnown RBP11.08□□□□□ -0.64
CLN3-253ENST00000636977 SLC25A16P16260 332 aa11.08□□□□□ -0.64
CLN3-253ENST00000636977 ARL17AQ8IVW1 177 aa11.08□□□□□ -0.64
CLN3-253ENST00000636977 TP53TG1Q9Y2A0 90 aa11.08□□□□□ -0.64
CLN3-253ENST00000636977 PLEKHB2Q96CS7 222 aa11.08□□□□□ -0.64
CLN3-253ENST00000636977 ANKRD17O75179 2603 aaKnown RBP11.08□□□□□ -0.64
CLN3-253ENST00000636977 B4DSR2 109 aa11.07□□□□□ -0.64
CLN3-253ENST00000636977 PSMB2P49721 201 aa11.07□□□□□ -0.64
CLN3-253ENST00000636977 FAM208BQ5VWN6 2430 aa11.07□□□□□ -0.64
CLN3-253ENST00000636977 ACACBO00763 2458 aa11.07□□□□□ -0.64
CLN3-253ENST00000636977 POM121L12Q8N7R1 296 aa11.07□□□□□ -0.64
CLN3-253ENST00000636977 YAE1D1Q9NRH1 226 aa11.07□□□□□ -0.64
CLN3-253ENST00000636977 CUBNO60494 3623 aa11.07□□□□□ -0.64
CLN3-253ENST00000636977 ZFP2Q6ZN57 461 aa11.07□□□□□ -0.64
CLN3-253ENST00000636977 TNFRSF18Q9Y5U5 241 aa11.07□□□□□ -0.64
CLN3-253ENST00000636977 C11orf86A6NJI1 115 aa11.06□□□□□ -0.64
CLN3-253ENST00000636977 K7EMT4 169 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms