RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 H0YGG7 62 aa-1.86□□□□□ -2.71
SCN1A-211ENST00000635893 FAM74A4Q5TZK3 123 aa-1.86□□□□□ -2.71
SCN1A-211ENST00000635893 MPC1Q9Y5U8 109 aa-1.86□□□□□ -2.71
SCN1A-211ENST00000635893 ADAMTS12P58397 1594 aa-1.86□□□□□ -2.71
SCN1A-211ENST00000635893 WDR7Q9Y4E6 1490 aa-1.87□□□□□ -2.71
SCN1A-211ENST00000635893 TRAV12-2A0A075B6T6 113 aa-1.87□□□□□ -2.71
SCN1A-211ENST00000635893 SMIM23A6NLE4 172 aa-1.87□□□□□ -2.71
SCN1A-211ENST00000635893 RIIAD1A6NNX1 92 aa-1.87□□□□□ -2.71
SCN1A-211ENST00000635893 EDF1O60869 148 aaKnown RBP-1.87□□□□□ -2.71
SCN1A-211ENST00000635893 MT1EP04732 61 aa-1.87□□□□□ -2.71
SCN1A-211ENST00000635893 COX6B1P14854 86 aa-1.87□□□□□ -2.71
SCN1A-211ENST00000635893 GNG5P63218 68 aa-1.87□□□□□ -2.71
SCN1A-211ENST00000635893 DCDP81605 110 aaKnown RBP-1.87□□□□□ -2.71
SCN1A-211ENST00000635893 DOCK1Q14185 1865 aa-1.87□□□□□ -2.71
SCN1A-211ENST00000635893 SCGB2B2Q4G0G5 96 aa-1.87□□□□□ -2.71
SCN1A-211ENST00000635893 CCSMST1Q4G0I0 132 aa-1.87□□□□□ -2.71
SCN1A-211ENST00000635893 DEFB105AQ8NG35 78 aa-1.87□□□□□ -2.71
SCN1A-211ENST00000635893 MCEEQ96PE7 176 aa-1.87□□□□□ -2.71
SCN1A-211ENST00000635893 C9orf16Q9BUW7 83 aa-1.87□□□□□ -2.71
SCN1A-211ENST00000635893 ANKRD50Q9ULJ7 1429 aa-1.87□□□□□ -2.71
SCN1A-211ENST00000635893 SPCS1Q9Y6A9 102 aa-1.87□□□□□ -2.71
SCN1A-211ENST00000635893 PTPN23Q9H3S7 1636 aa-1.88□□□□□ -2.71
SCN1A-211ENST00000635893 TEX49A0A1B0GTD5 131 aa-1.88□□□□□ -2.71
SCN1A-211ENST00000635893 LOC107986453A0A1B0GWG9 222 aa-1.88□□□□□ -2.71
SCN1A-211ENST00000635893 KPNA4O00629 521 aaPredicted RBP-1.88□□□□□ -2.71
SCN1A-211ENST00000635893 AKR1D1P51857 326 aa-1.88□□□□□ -2.71
SCN1A-211ENST00000635893 COTL1Q14019 142 aa-1.88□□□□□ -2.71
SCN1A-211ENST00000635893 MT1LQ93083 61 aa-1.88□□□□□ -2.71
SCN1A-211ENST00000635893 CAMSAP2Q08AD1 1489 aa-1.88□□□□□ -2.71
SCN1A-211ENST00000635893 PIK3C2AO00443 1686 aa-1.89□□□□□ -2.71
SCN1A-211ENST00000635893 FAM135BQ49AJ0 1406 aa-1.89□□□□□ -2.71
SCN1A-211ENST00000635893 UHRF1BP1Q6BDS2 1440 aa-1.89□□□□□ -2.71
SCN1A-211ENST00000635893 SLIT1O75093 1534 aa-1.89□□□□□ -2.71
SCN1A-211ENST00000635893 ZNF670-ZNF695F2Z2N8 137 aa-1.89□□□□□ -2.71
SCN1A-211ENST00000635893 APOC4-APOC2K7ER74 178 aa-1.89□□□□□ -2.71
SCN1A-211ENST00000635893 NCR2O95944 276 aa-1.89□□□□□ -2.71
SCN1A-211ENST00000635893 TFF1P04155 84 aa-1.89□□□□□ -2.71
SCN1A-211ENST00000635893 TPT1P13693 172 aaKnown RBP-1.89□□□□□ -2.71
SCN1A-211ENST00000635893 GTF2A1P52655 376 aaPredicted RBP-1.89□□□□□ -2.71
SCN1A-211ENST00000635893 Q6ZRX8 168 aa-1.89□□□□□ -2.71
SCN1A-211ENST00000635893 C9orf62Q8N4C0 152 aa-1.89□□□□□ -2.71
SCN1A-211ENST00000635893 NEK7Q8TDX7 302 aa-1.89□□□□□ -2.71
SCN1A-211ENST00000635893 PPP1R1CQ8WVI7 109 aa-1.89□□□□□ -2.71
SCN1A-211ENST00000635893 TMEM242Q9NWH2 141 aa-1.89□□□□□ -2.71
SCN1A-211ENST00000635893 PRNDQ9UKY0 176 aa-1.89□□□□□ -2.71
SCN1A-211ENST00000635893 FREM2Q5SZK8 3169 aa-1.89□□□□□ -2.71
SCN1A-211ENST00000635893 C9orf92A6NGG3 77 aa-1.9□□□□□ -2.71
SCN1A-211ENST00000635893 G3V2T6 193 aa-1.9□□□□□ -2.71
SCN1A-211ENST00000635893 AIPO00170 330 aa-1.9□□□□□ -2.71
SCN1A-211ENST00000635893 SDC4P31431 198 aa-1.9□□□□□ -2.71
SCN1A-211ENST00000635893 TAS2R41P59536 307 aa-1.9□□□□□ -2.71
SCN1A-211ENST00000635893 ITGB3BPQ13352 177 aaPredicted RBP-1.9□□□□□ -2.71
SCN1A-211ENST00000635893 UNQ5815/PRO19632Q6UWF5 114 aa-1.9□□□□□ -2.71
SCN1A-211ENST00000635893 OTORQ9NRC9 128 aa-1.9□□□□□ -2.71
SCN1A-211ENST00000635893 IL20Q9NYY1 176 aa-1.9□□□□□ -2.71
SCN1A-211ENST00000635893 TRBV10-1A0A0K0K1A3 114 aa-1.91□□□□□ -2.72
SCN1A-211ENST00000635893 LOC107984640A0A0U1RRK4 108 aa-1.91□□□□□ -2.72
SCN1A-211ENST00000635893 H7C1C5 153 aa-1.91□□□□□ -2.72
SCN1A-211ENST00000635893 SAA1P0DJI8 122 aaPredicted RBP-1.91□□□□□ -2.72
SCN1A-211ENST00000635893 CEBPGP53567 150 aa-1.91□□□□□ -2.72
SCN1A-211ENST00000635893 LCN6P62502 163 aa-1.91□□□□□ -2.72
SCN1A-211ENST00000635893 RTL8BQ17RB0 113 aa-1.91□□□□□ -2.72
SCN1A-211ENST00000635893 H1FX-AS1Q4G0G2 97 aa-1.91□□□□□ -2.72
SCN1A-211ENST00000635893 AKIRIN2Q53H80 203 aa-1.91□□□□□ -2.72
SCN1A-211ENST00000635893 OR5H6Q8NGV6 325 aa-1.91□□□□□ -2.72
SCN1A-211ENST00000635893 CARD19Q96LW7 228 aa-1.91□□□□□ -2.72
SCN1A-211ENST00000635893 SDF2Q99470 211 aa-1.91□□□□□ -2.72
SCN1A-211ENST00000635893 RTL8AQ9BWD3 113 aa-1.91□□□□□ -2.72
SCN1A-211ENST00000635893 TRBV6-1A0A0K0K1D8 114 aa-1.92□□□□□ -2.72
SCN1A-211ENST00000635893 I3L2K1 104 aa-1.92□□□□□ -2.72
SCN1A-211ENST00000635893 APOA2P02652 100 aa-1.92□□□□□ -2.72
SCN1A-211ENST00000635893 SMR3BP02814 79 aaPredicted RBP-1.92□□□□□ -2.72
SCN1A-211ENST00000635893 COX4I1P13073 169 aa-1.92□□□□□ -2.72
SCN1A-211ENST00000635893 GCHFRP30047 84 aa-1.92□□□□□ -2.72
SCN1A-211ENST00000635893 MAXP61244 160 aa-1.92□□□□□ -2.72
SCN1A-211ENST00000635893 SMIM7Q9BQ49 75 aa-1.92□□□□□ -2.72
SCN1A-211ENST00000635893 TP53AIP1Q9HCN2 124 aa-1.92□□□□□ -2.72
SCN1A-211ENST00000635893 KDM5AP29375 1690 aaKnown RBP-1.93□□□□□ -2.72
SCN1A-211ENST00000635893 ZNF142P52746 1687 aaPredicted RBP-1.93□□□□□ -2.72
SCN1A-211ENST00000635893 CST2P09228 141 aa-1.93□□□□□ -2.72
SCN1A-211ENST00000635893 FABP2P12104 132 aa-1.93□□□□□ -2.72
SCN1A-211ENST00000635893 FADDQ13158 208 aa-1.93□□□□□ -2.72
SCN1A-211ENST00000635893 SPA17Q15506 151 aa-1.93□□□□□ -2.72
SCN1A-211ENST00000635893 PRAP1Q96NZ9 151 aa-1.93□□□□□ -2.72
SCN1A-211ENST00000635893 S4R3F8 94 aa-1.93□□□□□ -2.72
SCN1A-211ENST00000635893 GOLGA4Q13439 2230 aaKnown RBP-1.93□□□□□ -2.72
SCN1A-211ENST00000635893 FER1L6Q2WGJ9 1857 aa-1.93□□□□□ -2.72
SCN1A-211ENST00000635893 CSMD2Q7Z408 3487 aa-1.93□□□□□ -2.72
SCN1A-211ENST00000635893 WNK3Q9BYP7 1800 aa-1.94□□□□□ -2.72
SCN1A-211ENST00000635893 PAPPAQ13219 1627 aa-1.94□□□□□ -2.72
SCN1A-211ENST00000635893 RBAKDNA6NC62 111 aa-1.94□□□□□ -2.72
SCN1A-211ENST00000635893 BCE1O60756 84 aa-1.94□□□□□ -2.72
SCN1A-211ENST00000635893 OR2H2O95918 312 aa-1.94□□□□□ -2.72
SCN1A-211ENST00000635893 DEFB110Q30KQ9 67 aa-1.94□□□□□ -2.72
SCN1A-211ENST00000635893 DGCR14Q96DF8 476 aaKnown RBP-1.94□□□□□ -2.72
SCN1A-211ENST00000635893 PRELID3AQ96N28 172 aa-1.94□□□□□ -2.72
SCN1A-211ENST00000635893 LRTM1Q9HBL6 345 aa-1.94□□□□□ -2.72
SCN1A-211ENST00000635893 SSR3Q9UNL2 185 aa-1.94□□□□□ -2.72
SCN1A-211ENST00000635893 ADCY9O60503 1353 aa-1.95□□□□□ -2.72
SCN1A-211ENST00000635893 H3BQV1 296 aa-1.95□□□□□ -2.72
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms