RNA–Protein interactions for RNA: ENST00000631420.1

LIMS3-206, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 1,580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-206ENST00000631420 KIF25-AS1Q9Y6Z4 181 aa10.48□□□□□ -0.73
LIMS3-206ENST00000631420 COLCA2A8K830 154 aa10.48□□□□□ -0.73
LIMS3-206ENST00000631420 DAD1P61803 113 aa10.48□□□□□ -0.73
LIMS3-206ENST00000631420 FAM210BQ96KR6 192 aa10.48□□□□□ -0.73
LIMS3-206ENST00000631420 A8MWV9 139 aa10.47□□□□□ -0.73
LIMS3-206ENST00000631420 TRGC1P0CF51 173 aa10.47□□□□□ -0.73
LIMS3-206ENST00000631420 LINC00315P59091 139 aa10.47□□□□□ -0.73
LIMS3-206ENST00000631420 NANOS2P60321 138 aaKnown RBP10.47□□□□□ -0.73
LIMS3-206ENST00000631420 FAM74A4Q5TZK3 123 aa10.47□□□□□ -0.73
LIMS3-206ENST00000631420 OR4C5Q8NGB2 326 aa10.47□□□□□ -0.73
LIMS3-206ENST00000631420 AP1S3Q96PC3 154 aa10.47□□□□□ -0.73
LIMS3-206ENST00000631420 U3KQK5 164 aa10.47□□□□□ -0.73
LIMS3-206ENST00000631420 TRAV4A0A0B4J268 109 aa10.46□□□□□ -0.74
LIMS3-206ENST00000631420 A0A1B0GW15 77 aa10.46□□□□□ -0.74
LIMS3-206ENST00000631420 RAB4BP61018 213 aa10.46□□□□□ -0.74
LIMS3-206ENST00000631420 UFSP1Q6NVU6 142 aa10.46□□□□□ -0.74
LIMS3-206ENST00000631420 TMEM136Q6ZRR5 245 aa10.46□□□□□ -0.74
LIMS3-206ENST00000631420 C11orf45Q8TAV5 145 aa10.46□□□□□ -0.74
LIMS3-206ENST00000631420 NDUFAF3Q9BU61 184 aa10.46□□□□□ -0.74
LIMS3-206ENST00000631420 TMEM191AQ9H0A3 160 aa10.46□□□□□ -0.74
LIMS3-206ENST00000631420 Q6ZSN1 163 aa10.45□□□□□ -0.74
LIMS3-206ENST00000631420 AMN1Q8IY45 258 aa10.45□□□□□ -0.74
LIMS3-206ENST00000631420 GATD1Q8NB37 220 aa10.45□□□□□ -0.74
LIMS3-206ENST00000631420 C18orf15Q96N68 181 aa10.45□□□□□ -0.74
LIMS3-206ENST00000631420 TEX48A0A1B0GUV7 120 aa10.44□□□□□ -0.74
LIMS3-206ENST00000631420 RASL11AQ6T310 242 aa10.44□□□□□ -0.74
LIMS3-206ENST00000631420 SMIM15Q7Z3B0 74 aa10.44□□□□□ -0.74
LIMS3-206ENST00000631420 RNF185Q96GF1 192 aa10.44□□□□□ -0.74
LIMS3-206ENST00000631420 DPH3P1Q9H4G8 78 aa10.44□□□□□ -0.74
LIMS3-206ENST00000631420 EDA2RQ9HAV5 297 aa10.44□□□□□ -0.74
LIMS3-206ENST00000631420 S100A8P05109 93 aa10.43□□□□□ -0.74
LIMS3-206ENST00000631420 MGPP08493 103 aa10.43□□□□□ -0.74
LIMS3-206ENST00000631420 SMIM17P0DL12 118 aa10.43□□□□□ -0.74
LIMS3-206ENST00000631420 RAB4AP20338 218 aa10.43□□□□□ -0.74
LIMS3-206ENST00000631420 FAM104BQ5XKR9 115 aa10.43□□□□□ -0.74
LIMS3-206ENST00000631420 Q6ZTC4 211 aa10.43□□□□□ -0.74
LIMS3-206ENST00000631420 HOXA5P20719 270 aa10.43□□□□□ -0.74
LIMS3-206ENST00000631420 FHL2Q14192 279 aa10.43□□□□□ -0.74
LIMS3-206ENST00000631420 GNB1LQ9BYB4 327 aa10.43□□□□□ -0.74
LIMS3-206ENST00000631420 TRAV26-2A0A0B4J265 109 aa10.42□□□□□ -0.74
LIMS3-206ENST00000631420 F5H697 171 aa10.42□□□□□ -0.74
LIMS3-206ENST00000631420 GAS8-AS1O95177 125 aa10.42□□□□□ -0.74
LIMS3-206ENST00000631420 HTN3P15516 51 aa10.42□□□□□ -0.74
LIMS3-206ENST00000631420 SLAQ13239 276 aa10.42□□□□□ -0.74
LIMS3-206ENST00000631420 ZFP2Q6ZN57 461 aa10.42□□□□□ -0.74
LIMS3-206ENST00000631420 TRGV4A0A0C4DH28 118 aa10.41□□□□□ -0.74
LIMS3-206ENST00000631420 ATP5G1P05496 136 aa10.41□□□□□ -0.74
LIMS3-206ENST00000631420 RAB5AP20339 215 aa10.41□□□□□ -0.74
LIMS3-206ENST00000631420 ZNF56Q15929 161 aa10.41□□□□□ -0.74
LIMS3-206ENST00000631420 MRPL51Q4U2R6 128 aaKnown RBP10.41□□□□□ -0.74
LIMS3-206ENST00000631420 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.41□□□□□ -0.74
LIMS3-206ENST00000631420 SMKR1H3BMG3 65 aa10.4□□□□□ -0.74
LIMS3-206ENST00000631420 RHODO00212 210 aa10.4□□□□□ -0.74
LIMS3-206ENST00000631420 RPS10P46783 165 aaKnown RBP10.4□□□□□ -0.74
LIMS3-206ENST00000631420 KIAA1644Q3SXP7 199 aa10.4□□□□□ -0.74
LIMS3-206ENST00000631420 SUMO4Q6EEV6 95 aa10.4□□□□□ -0.74
LIMS3-206ENST00000631420 Q9UF83 564 aa10.4□□□□□ -0.74
LIMS3-206ENST00000631420 TRAPPC1Q9Y5R8 145 aa10.4□□□□□ -0.74
LIMS3-206ENST00000631420 F5H768 121 aa10.39□□□□□ -0.75
LIMS3-206ENST00000631420 HLA-DQA1P01909 254 aa10.39□□□□□ -0.75
LIMS3-206ENST00000631420 GATA1P15976 413 aaPredicted RBP10.39□□□□□ -0.75
LIMS3-206ENST00000631420 FABP9Q0Z7S8 132 aa10.39□□□□□ -0.75
LIMS3-206ENST00000631420 COX19Q49B96 90 aa10.39□□□□□ -0.75
LIMS3-206ENST00000631420 FRZBQ92765 325 aa10.39□□□□□ -0.75
LIMS3-206ENST00000631420 MRPL18Q9H0U6 180 aaKnown RBP10.39□□□□□ -0.75
LIMS3-206ENST00000631420 NACAE9PAV3 2078 aa10.39□□□□□ -0.75
LIMS3-206ENST00000631420 STAB2Q8WWQ8 2551 aa10.39□□□□□ -0.75
LIMS3-206ENST00000631420 APCSP02743 223 aa10.39□□□□□ -0.75
LIMS3-206ENST00000631420 P0DMU3 169 aa10.39□□□□□ -0.75
LIMS3-206ENST00000631420 FAM231AP0DMU4 169 aa10.39□□□□□ -0.75
LIMS3-206ENST00000631420 FAM231CP0DMU5 169 aa10.39□□□□□ -0.75
LIMS3-206ENST00000631420 SLC25A29Q8N8R3 303 aa10.39□□□□□ -0.75
LIMS3-206ENST00000631420 M0QY20 66 aa10.38□□□□□ -0.75
LIMS3-206ENST00000631420 CIDEAO60543 219 aa10.38□□□□□ -0.75
LIMS3-206ENST00000631420 NCR2O95944 276 aa10.38□□□□□ -0.75
LIMS3-206ENST00000631420 HHLA3Q9XRX5 114 aa10.38□□□□□ -0.75
LIMS3-206ENST00000631420 DEFB131BA0A096LNP1 70 aa10.37□□□□□ -0.75
LIMS3-206ENST00000631420 MT-ND6P03923 174 aa10.37□□□□□ -0.75
LIMS3-206ENST00000631420 TRGC2P03986 189 aa10.37□□□□□ -0.75
LIMS3-206ENST00000631420 A0A0J9YY99 117 aa10.36□□□□□ -0.75
LIMS3-206ENST00000631420 LOC100131303A0A0U1RQF7 123 aa10.36□□□□□ -0.75
LIMS3-206ENST00000631420 D6R8Y8 96 aa10.36□□□□□ -0.75
LIMS3-206ENST00000631420 CKS2P33552 79 aa10.36□□□□□ -0.75
LIMS3-206ENST00000631420 CRYBA4P53673 196 aa10.36□□□□□ -0.75
LIMS3-206ENST00000631420 RPL39LQ96EH5 51 aaKnown RBP10.36□□□□□ -0.75
LIMS3-206ENST00000631420 VSIG2Q96IQ7 327 aa10.36□□□□□ -0.75
LIMS3-206ENST00000631420 TRAV26-1A0A087WT03 109 aa10.35□□□□□ -0.75
LIMS3-206ENST00000631420 TRBV6-4A0A1B0GX49 114 aa10.35□□□□□ -0.75
LIMS3-206ENST00000631420 MRAP2Q96G30 205 aa10.35□□□□□ -0.75
LIMS3-206ENST00000631420 PRO0255Q9UI72 69 aa10.35□□□□□ -0.75
LIMS3-206ENST00000631420 TRAV10A0A0B4J240 114 aa10.35□□□□□ -0.75
LIMS3-206ENST00000631420 K7EQD1 137 aa10.35□□□□□ -0.75
LIMS3-206ENST00000631420 PHOX2AO14813 284 aa10.34□□□□□ -0.75
LIMS3-206ENST00000631420 PAX4O43316 350 aa10.34□□□□□ -0.75
LIMS3-206ENST00000631420 NRACQ8N912 160 aa10.34□□□□□ -0.75
LIMS3-206ENST00000631420 NEXN-AS1Q8NBZ9 246 aa10.34□□□□□ -0.75
LIMS3-206ENST00000631420 PHLDA1Q8WV24 401 aaPredicted RBP10.34□□□□□ -0.75
LIMS3-206ENST00000631420 NPYP01303 97 aa10.33□□□□□ -0.76
LIMS3-206ENST00000631420 ORMDL3Q8N138 153 aa10.33□□□□□ -0.76
LIMS3-206ENST00000631420 PRELID3AQ96N28 172 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms