RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 RPL39P62891 51 aaKnown RBP7.73□□□□□ -1.17
VPS11-208ENST00000621676 TEX29Q8N6K0 151 aa7.73□□□□□ -1.17
VPS11-208ENST00000621676 IGHV3-64A0A075B6Q5 118 aa7.72□□□□□ -1.17
VPS11-208ENST00000621676 TRGV2A0A075B6R0 118 aa7.72□□□□□ -1.17
VPS11-208ENST00000621676 LINC01559Q495D7 138 aa7.72□□□□□ -1.17
VPS11-208ENST00000621676 Q6ZTI0 123 aa7.72□□□□□ -1.17
VPS11-208ENST00000621676 TMEM158Q8WZ71 300 aa7.72□□□□□ -1.17
VPS11-208ENST00000621676 RNF185Q96GF1 192 aa7.72□□□□□ -1.17
VPS11-208ENST00000621676 NUDT3O95989 172 aa7.72□□□□□ -1.17
VPS11-208ENST00000621676 DEFB121Q5J5C9 76 aa7.72□□□□□ -1.17
VPS11-208ENST00000621676 K7EMI3 77 aa7.72□□□□□ -1.17
VPS11-208ENST00000621676 CACNG7P62955 275 aa7.72□□□□□ -1.17
VPS11-208ENST00000621676 FOXI2Q6ZQN5 318 aa7.72□□□□□ -1.17
VPS11-208ENST00000621676 TMEM86BQ8N661 226 aa7.72□□□□□ -1.17
VPS11-208ENST00000621676 GATD1Q8NB37 220 aa7.72□□□□□ -1.17
VPS11-208ENST00000621676 OR2K2Q8NGT1 345 aa7.72□□□□□ -1.17
VPS11-208ENST00000621676 SVIPQ8NHG7 77 aa7.72□□□□□ -1.17
VPS11-208ENST00000621676 SPAG8Q99932 426 aaPredicted RBP7.72□□□□□ -1.17
VPS11-208ENST00000621676 PRIMA1Q86XR5 153 aa7.71□□□□□ -1.17
VPS11-208ENST00000621676 CSTL1Q9H114 145 aa7.71□□□□□ -1.17
VPS11-208ENST00000621676 RETNQ9HD89 108 aa7.71□□□□□ -1.17
VPS11-208ENST00000621676 LGALS9O00182 355 aa7.71□□□□□ -1.18
VPS11-208ENST00000621676 Q6ZSN1 163 aa7.71□□□□□ -1.18
VPS11-208ENST00000621676 TSPOP30536 169 aa7.7□□□□□ -1.18
VPS11-208ENST00000621676 ATP6V0BQ99437 205 aa7.7□□□□□ -1.18
VPS11-208ENST00000621676 ZNF580Q9UK33 172 aa7.7□□□□□ -1.18
VPS11-208ENST00000621676 RBAKDNA6NC62 111 aa7.7□□□□□ -1.18
VPS11-208ENST00000621676 EREGO14944 169 aa7.7□□□□□ -1.18
VPS11-208ENST00000621676 HLA-DRB4P13762 266 aa7.7□□□□□ -1.18
VPS11-208ENST00000621676 CT83Q5H943 113 aa7.7□□□□□ -1.18
VPS11-208ENST00000621676 AMTNQ6UX39 209 aa7.7□□□□□ -1.18
VPS11-208ENST00000621676 ATP5L2Q7Z4Y8 100 aa7.7□□□□□ -1.18
VPS11-208ENST00000621676 NDUFAF3Q9BU61 184 aa7.7□□□□□ -1.18
VPS11-208ENST00000621676 GFRA4Q9GZZ7 299 aa7.7□□□□□ -1.18
VPS11-208ENST00000621676 MAP1LC3AQ9H492 121 aa7.7□□□□□ -1.18
VPS11-208ENST00000621676 TMEM160Q9NX00 188 aa7.7□□□□□ -1.18
VPS11-208ENST00000621676 DKK2Q9UBU2 259 aa7.7□□□□□ -1.18
VPS11-208ENST00000621676 HLA-DRB4X5D2U9 266 aa7.7□□□□□ -1.18
VPS11-208ENST00000621676 A0A0J9YY99 117 aa7.7□□□□□ -1.18
VPS11-208ENST00000621676 LOC100131303A0A0U1RQF7 123 aa7.7□□□□□ -1.18
VPS11-208ENST00000621676 LBHQ53QV2 105 aaPredicted RBP7.7□□□□□ -1.18
VPS11-208ENST00000621676 VAMP8Q9BV40 100 aa7.7□□□□□ -1.18
VPS11-208ENST00000621676 RPS20P60866 119 aaKnown RBP7.69□□□□□ -1.18
VPS11-208ENST00000621676 OR10J3Q5JRS4 329 aa7.69□□□□□ -1.18
VPS11-208ENST00000621676 KLLNB2CW77 178 aa7.69□□□□□ -1.18
VPS11-208ENST00000621676 NUTF2P61970 127 aaKnown RBP7.69□□□□□ -1.18
VPS11-208ENST00000621676 GTSCR1Q86UQ5 136 aa7.69□□□□□ -1.18
VPS11-208ENST00000621676 ZNF479Q96JC4 524 aa7.69□□□□□ -1.18
VPS11-208ENST00000621676 DUSP14O95147 198 aaKnown RBP7.68□□□□□ -1.18
VPS11-208ENST00000621676 G0S2P27469 103 aa7.68□□□□□ -1.18
VPS11-208ENST00000621676 NMUP48645 174 aa7.68□□□□□ -1.18
VPS11-208ENST00000621676 SMIM12Q96EX1 92 aa7.68□□□□□ -1.18
VPS11-208ENST00000621676 AP1S3Q96PC3 154 aa7.68□□□□□ -1.18
VPS11-208ENST00000621676 TMEM191AQ9H0A3 160 aa7.68□□□□□ -1.18
VPS11-208ENST00000621676 Q0VG73 95 aa7.68□□□□□ -1.18
VPS11-208ENST00000621676 SUMO4Q6EEV6 95 aa7.68□□□□□ -1.18
VPS11-208ENST00000621676 Q6ZVH6 145 aa7.68□□□□□ -1.18
VPS11-208ENST00000621676 C1orf158Q8N1D5 194 aa7.68□□□□□ -1.18
VPS11-208ENST00000621676 SPATA45Q537H7 98 aa7.68□□□□□ -1.18
VPS11-208ENST00000621676 RNF152Q8N8N0 203 aa7.68□□□□□ -1.18
VPS11-208ENST00000621676 TMEM89A2RUT3 159 aa7.67□□□□□ -1.18
VPS11-208ENST00000621676 GAGE12JA6NER3 117 aa7.67□□□□□ -1.18
VPS11-208ENST00000621676 CTRLP40313 264 aa7.67□□□□□ -1.18
VPS11-208ENST00000621676 GAGE1Q13065 139 aa7.67□□□□□ -1.18
VPS11-208ENST00000621676 GAGE4Q13068 117 aa7.67□□□□□ -1.18
VPS11-208ENST00000621676 GAGE5Q13069 117 aa7.67□□□□□ -1.18
VPS11-208ENST00000621676 RRN3P1Q2M238 152 aa7.67□□□□□ -1.18
VPS11-208ENST00000621676 GAGE13Q4V321 117 aa7.67□□□□□ -1.18
VPS11-208ENST00000621676 C12orf54Q6X4T0 127 aa7.67□□□□□ -1.18
VPS11-208ENST00000621676 RASL10AQ92737 203 aa7.67□□□□□ -1.18
VPS11-208ENST00000621676 TRAV9-1A0A075B6T8 112 aa7.67□□□□□ -1.18
VPS11-208ENST00000621676 SDHAF1A6NFY7 115 aa7.67□□□□□ -1.18
VPS11-208ENST00000621676 FCER1GP30273 86 aa7.67□□□□□ -1.18
VPS11-208ENST00000621676 DPH3P1Q9H4G8 78 aa7.67□□□□□ -1.18
VPS11-208ENST00000621676 PRSS29PA6NIE9 313 aa7.67□□□□□ -1.18
VPS11-208ENST00000621676 G3V4G9 280 aa7.67□□□□□ -1.18
VPS11-208ENST00000621676 INSP01308 110 aa7.67□□□□□ -1.18
VPS11-208ENST00000621676 SNHG12Q9BXW3 62 aa7.67□□□□□ -1.18
VPS11-208ENST00000621676 FHL3Q13643 280 aa7.66□□□□□ -1.18
VPS11-208ENST00000621676 COA6Q5JTJ3 125 aaKnown RBP7.66□□□□□ -1.18
VPS11-208ENST00000621676 TMEM70Q9BUB7 260 aa7.66□□□□□ -1.18
VPS11-208ENST00000621676 IGLV1-51P01701 117 aa7.66□□□□□ -1.18
VPS11-208ENST00000621676 KLK9Q2XQG4 91 aa7.66□□□□□ -1.18
VPS11-208ENST00000621676 Q6AWC8 147 aa7.66□□□□□ -1.18
VPS11-208ENST00000621676 MRPL53Q96EL3 112 aaKnown RBP7.66□□□□□ -1.18
VPS11-208ENST00000621676 MAP1LC3CQ9BXW4 147 aa7.66□□□□□ -1.18
VPS11-208ENST00000621676 CSMD3Q7Z407 3707 aa7.65□□□□□ -1.18
VPS11-208ENST00000621676 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.65□□□□□ -1.18
VPS11-208ENST00000621676 IGKV2-29A2NJV5 120 aaPredicted RBP7.65□□□□□ -1.18
VPS11-208ENST00000621676 SUMO2P61956 95 aaKnown RBP7.65□□□□□ -1.18
VPS11-208ENST00000621676 ZNRF2Q8NHG8 242 aa7.65□□□□□ -1.18
VPS11-208ENST00000621676 OR4C5Q8NGB2 326 aa7.65□□□□□ -1.18
VPS11-208ENST00000621676 TRAV8-6A0A0B4J262 113 aa7.65□□□□□ -1.19
VPS11-208ENST00000621676 FAM231BA6NCW3 169 aa7.65□□□□□ -1.19
VPS11-208ENST00000621676 A0A096LNJ9 63 aa7.64□□□□□ -1.19
VPS11-208ENST00000621676 SYS1-DBNDD2H3BUS1 97 aa7.64□□□□□ -1.19
VPS11-208ENST00000621676 BRI3O95415 125 aa7.64□□□□□ -1.19
VPS11-208ENST00000621676 CLPSL2Q6UWE3 100 aa7.64□□□□□ -1.19
VPS11-208ENST00000621676 Q6ZN92 141 aa7.64□□□□□ -1.19
VPS11-208ENST00000621676 NDUFA7O95182 113 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms