RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 H3BRM9 83 aa15.88■□□□□ 0.13
LIME1-210ENST00000621325 SNRPD3P62318 126 aaKnown RBP15.88■□□□□ 0.13
LIME1-210ENST00000621325 SEC11AP67812 179 aa15.88■□□□□ 0.13
LIME1-210ENST00000621325 TMEM86BQ8N661 226 aa15.88■□□□□ 0.13
LIME1-210ENST00000621325 MAP1LC3AQ9H492 121 aa15.88■□□□□ 0.13
LIME1-210ENST00000621325 MTORP42345 2549 aa15.88■□□□□ 0.13
LIME1-210ENST00000621325 A0A0J9YX75 114 aa15.87■□□□□ 0.13
LIME1-210ENST00000621325 TSPAN13O95857 204 aa15.87■□□□□ 0.13
LIME1-210ENST00000621325 RNASE3P12724 160 aaKnown RBP15.87■□□□□ 0.13
LIME1-210ENST00000621325 TRAV12-3A0A0B4J271 114 aa15.86■□□□□ 0.13
LIME1-210ENST00000621325 LINC01619G3V211 115 aa15.86■□□□□ 0.13
LIME1-210ENST00000621325 OR5A1Q8NGJ0 315 aa15.86■□□□□ 0.13
LIME1-210ENST00000621325 PHLDA3Q9Y5J5 127 aa15.86■□□□□ 0.13
LIME1-210ENST00000621325 TRAV12-2A0A075B6T6 113 aa15.85■□□□□ 0.13
LIME1-210ENST00000621325 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP15.85■□□□□ 0.13
LIME1-210ENST00000621325 C4orf3Q8WVX3 66 aa15.85■□□□□ 0.13
LIME1-210ENST00000621325 YAE1D1Q9NRH1 226 aa15.85■□□□□ 0.13
LIME1-210ENST00000621325 ANK3Q12955 4377 aaKnown RBP15.85■□□□□ 0.13
LIME1-210ENST00000621325 FASNP49327 2511 aaKnown RBP15.85■□□□□ 0.13
LIME1-210ENST00000621325 NRACQ8N912 160 aa15.85■□□□□ 0.13
LIME1-210ENST00000621325 SPATA25Q9BR10 227 aa15.85■□□□□ 0.13
LIME1-210ENST00000621325 A0A1W2PPM0 123 aa15.84■□□□□ 0.13
LIME1-210ENST00000621325 HBDP02042 147 aa15.84■□□□□ 0.13
LIME1-210ENST00000621325 C11orf44Q8N8P7 122 aa15.84■□□□□ 0.13
LIME1-210ENST00000621325 KLHL30-AS1Q8NEE0 82 aa15.84■□□□□ 0.13
LIME1-210ENST00000621325 TEX29Q8N6K0 151 aa15.84■□□□□ 0.13
LIME1-210ENST00000621325 DPF1Q92782 380 aa15.84■□□□□ 0.13
LIME1-210ENST00000621325 SETD2Q9BYW2 2564 aaPredicted RBP15.84■□□□□ 0.13
LIME1-210ENST00000621325 C14orf178Q8N769 122 aaPredicted RBP15.83■□□□□ 0.12
LIME1-210ENST00000621325 DLX4Q92988 240 aaPredicted RBP15.83■□□□□ 0.12
LIME1-210ENST00000621325 MUC4Q99102 2169 aa15.83■□□□□ 0.12
LIME1-210ENST00000621325 HERV-K104P63124 156 aa15.83■□□□□ 0.12
LIME1-210ENST00000621325 LINC01545Q5VT33 79 aa15.83■□□□□ 0.12
LIME1-210ENST00000621325 FAM159AQ6UWV7 190 aa15.82■□□□□ 0.12
LIME1-210ENST00000621325 FOXC2Q99958 501 aa15.82■□□□□ 0.12
LIME1-210ENST00000621325 GCN1Q92616 2671 aaKnown RBP15.82■□□□□ 0.12
LIME1-210ENST00000621325 SPINK13Q1W4C9 94 aa15.82■□□□□ 0.12
LIME1-210ENST00000621325 OR9G4Q8NGQ1 327 aa15.82■□□□□ 0.12
LIME1-210ENST00000621325 IGLV2-18A0A075B6J9 118 aa15.81■□□□□ 0.12
LIME1-210ENST00000621325 NXT2Q9NPJ8 142 aaKnown RBP15.81■□□□□ 0.12
LIME1-210ENST00000621325 A6NDN8 102 aa15.8■□□□□ 0.12
LIME1-210ENST00000621325 LINC01546A6NGU7 62 aa15.8■□□□□ 0.12
LIME1-210ENST00000621325 MED14OSP0DP75 135 aa15.8■□□□□ 0.12
LIME1-210ENST00000621325 HECTD1Q9ULT8 2610 aa15.8■□□□□ 0.12
LIME1-210ENST00000621325 COX8AP10176 69 aa15.8■□□□□ 0.12
LIME1-210ENST00000621325 LEPP41159 167 aa15.8■□□□□ 0.12
LIME1-210ENST00000621325 CD7P09564 240 aa15.79■□□□□ 0.12
LIME1-210ENST00000621325 ODF3Q96PU9 254 aa15.79■□□□□ 0.12
LIME1-210ENST00000621325 TMEM61Q8N0U2 210 aa15.79■□□□□ 0.12
LIME1-210ENST00000621325 Q8N8P6 123 aa15.79■□□□□ 0.12
LIME1-210ENST00000621325 C18orf15Q96N68 181 aa15.79■□□□□ 0.12
LIME1-210ENST00000621325 KNCNA6PVL3 124 aa15.78■□□□□ 0.12
LIME1-210ENST00000621325 A0A1W2PRX2 142 aa15.78■□□□□ 0.12
LIME1-210ENST00000621325 DPH3P1Q9H4G8 78 aa15.78■□□□□ 0.12
LIME1-210ENST00000621325 AMTNQ6UX39 209 aa15.77■□□□□ 0.12
LIME1-210ENST00000621325 FOXI2Q6ZQN5 318 aa15.77■□□□□ 0.12
LIME1-210ENST00000621325 IFI27L1Q96BM0 104 aa15.77■□□□□ 0.12
LIME1-210ENST00000621325 PEMTQ9UBM1 199 aa15.77■□□□□ 0.12
LIME1-210ENST00000621325 WNK1Q9H4A3 2382 aa15.77■□□□□ 0.12
LIME1-210ENST00000621325 MGPP08493 103 aa15.77■□□□□ 0.11
LIME1-210ENST00000621325 DEFB131AP59861 70 aa15.77■□□□□ 0.11
LIME1-210ENST00000621325 RNF183Q96D59 192 aa15.77■□□□□ 0.11
LIME1-210ENST00000621325 SPAG8Q99932 426 aaPredicted RBP15.77■□□□□ 0.11
LIME1-210ENST00000621325 JPT2Q9H910 190 aa15.77■□□□□ 0.11
LIME1-210ENST00000621325 FABP2P12104 132 aa15.76■□□□□ 0.11
LIME1-210ENST00000621325 FCER1GP30273 86 aa15.76■□□□□ 0.11
LIME1-210ENST00000621325 RPL39LQ96EH5 51 aaKnown RBP15.76■□□□□ 0.11
LIME1-210ENST00000621325 SPANXB1Q9NS25 103 aaPredicted RBP15.76■□□□□ 0.11
LIME1-210ENST00000621325 CD28P10747 220 aa15.76■□□□□ 0.11
LIME1-210ENST00000621325 TMEM158Q8WZ71 300 aa15.76■□□□□ 0.11
LIME1-210ENST00000621325 RASL10AQ92737 203 aa15.76■□□□□ 0.11
LIME1-210ENST00000621325 MRPL16Q9NX20 251 aaKnown RBP15.76■□□□□ 0.11
LIME1-210ENST00000621325 MDFICQ9P1T7 246 aa15.76■□□□□ 0.11
LIME1-210ENST00000621325 OR11H12B2RN74 326 aa15.75■□□□□ 0.11
LIME1-210ENST00000621325 NXPH4O95158 308 aa15.75■□□□□ 0.11
LIME1-210ENST00000621325 OR11H2Q8NH07 326 aa15.75■□□□□ 0.11
LIME1-210ENST00000621325 RAX2Q96IS3 184 aa15.75■□□□□ 0.11
LIME1-210ENST00000621325 DUSP14O95147 198 aaKnown RBP15.75■□□□□ 0.11
LIME1-210ENST00000621325 WFDC2Q14508 124 aa15.75■□□□□ 0.11
LIME1-210ENST00000621325 SMR3AQ99954 134 aa15.75■□□□□ 0.11
LIME1-210ENST00000621325 IGHV3-16A0A0C4DH30 117 aa15.74■□□□□ 0.11
LIME1-210ENST00000621325 SH2D6Q7Z4S9 175 aa15.74■□□□□ 0.11
LIME1-210ENST00000621325 Q8N1Y9 231 aa15.74■□□□□ 0.11
LIME1-210ENST00000621325 NOTCH2Q04721 2471 aa15.73■□□□□ 0.11
LIME1-210ENST00000621325 ODF1Q14990 250 aa15.73■□□□□ 0.11
LIME1-210ENST00000621325 KIF25-AS1Q9Y6Z4 181 aa15.73■□□□□ 0.11
LIME1-210ENST00000621325 FGF6P10767 208 aa15.73■□□□□ 0.11
LIME1-210ENST00000621325 LINC00315P59091 139 aa15.73■□□□□ 0.11
LIME1-210ENST00000621325 SAMD5Q5TGI4 173 aa15.73■□□□□ 0.11
LIME1-210ENST00000621325 DYNLRB2Q8TF09 96 aa15.73■□□□□ 0.11
LIME1-210ENST00000621325 RBMY1A1P0DJD3 496 aaKnown RBP15.72■□□□□ 0.11
LIME1-210ENST00000621325 RBMY1CP0DJD4 496 aa15.72■□□□□ 0.11
LIME1-210ENST00000621325 TCTAP57738 103 aa15.72■□□□□ 0.11
LIME1-210ENST00000621325 RBMY1FQ15415 496 aaKnown RBP15.72■□□□□ 0.11
LIME1-210ENST00000621325 DEFB114Q30KQ6 69 aa15.72■□□□□ 0.11
LIME1-210ENST00000621325 INSL3P51460 131 aa15.72■□□□□ 0.11
LIME1-210ENST00000621325 LGALS9BQ3B8N2 356 aa15.72■□□□□ 0.11
LIME1-210ENST00000621325 LGALS9CQ6DKI2 356 aa15.72■□□□□ 0.11
LIME1-210ENST00000621325 SMIM2Q9BVW6 85 aa15.72■□□□□ 0.11
LIME1-210ENST00000621325 IGHV1OR15-1A0A075B7D0 117 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms