RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 DNAH8Q96JB1 4490 aa11.63□□□□□ -0.55
SHKBP1-223ENST00000600552 A0A087WWC5 75 aa11.63□□□□□ -0.55
SHKBP1-223ENST00000600552 J3QL48 77 aa11.63□□□□□ -0.55
SHKBP1-223ENST00000600552 LINC00694P0DN24 101 aa11.63□□□□□ -0.55
SHKBP1-223ENST00000600552 CST9LP1Q5W188 147 aa11.63□□□□□ -0.55
SHKBP1-223ENST00000600552 UFSP1Q6NVU6 142 aa11.63□□□□□ -0.55
SHKBP1-223ENST00000600552 HIST1H2BAQ96A08 127 aa11.63□□□□□ -0.55
SHKBP1-223ENST00000600552 KLK12Q9UKR0 248 aa11.63□□□□□ -0.55
SHKBP1-223ENST00000600552 MAP1LC3B2A6NCE7 125 aa11.62□□□□□ -0.55
SHKBP1-223ENST00000600552 RBFOX3A6NFN3 312 aa11.62□□□□□ -0.55
SHKBP1-223ENST00000600552 RHODO00212 210 aa11.62□□□□□ -0.55
SHKBP1-223ENST00000600552 TPT1P13693 172 aaKnown RBP11.62□□□□□ -0.55
SHKBP1-223ENST00000600552 FAM162BQ5T6X4 162 aa11.62□□□□□ -0.55
SHKBP1-223ENST00000600552 MAP1LC3BQ9GZQ8 125 aa11.62□□□□□ -0.55
SHKBP1-223ENST00000600552 PIK3CD-AS1Q5SR53 167 aa11.61□□□□□ -0.55
SHKBP1-223ENST00000600552 KCNIP4Q6PIL6 250 aa11.61□□□□□ -0.55
SHKBP1-223ENST00000600552 UBE2WQ96B02 151 aa11.61□□□□□ -0.55
SHKBP1-223ENST00000600552 RMI2Q96E14 147 aa11.61□□□□□ -0.55
SHKBP1-223ENST00000600552 NKX6-2Q9C056 277 aaPredicted RBP11.61□□□□□ -0.55
SHKBP1-223ENST00000600552 ZFP30Q9Y2G7 519 aa11.61□□□□□ -0.55
SHKBP1-223ENST00000600552 A0A087WX48 190 aa11.6□□□□□ -0.55
SHKBP1-223ENST00000600552 LINC00528Q8N1L1 170 aa11.6□□□□□ -0.55
SHKBP1-223ENST00000600552 SFRP2Q96HF1 295 aa11.6□□□□□ -0.55
SHKBP1-223ENST00000600552 FMC1Q96HJ9 113 aa11.6□□□□□ -0.55
SHKBP1-223ENST00000600552 A0A1B0GV50 99 aa11.59□□□□□ -0.55
SHKBP1-223ENST00000600552 TMEM262E9PQX1 116 aa11.59□□□□□ -0.55
SHKBP1-223ENST00000600552 ARPC5O15511 151 aa11.59□□□□□ -0.55
SHKBP1-223ENST00000600552 PLA2G1BP04054 148 aaKnown RBP11.59□□□□□ -0.55
SHKBP1-223ENST00000600552 SSTP61278 116 aa11.59□□□□□ -0.55
SHKBP1-223ENST00000600552 NIT1Q86X76 327 aa11.59□□□□□ -0.55
SHKBP1-223ENST00000600552 STOML3Q8TAV4 291 aa11.59□□□□□ -0.55
SHKBP1-223ENST00000600552 BATF3Q9NR55 127 aa11.59□□□□□ -0.55
SHKBP1-223ENST00000600552 MYCBP2O75592 4640 aa11.59□□□□□ -0.55
SHKBP1-223ENST00000600552 C1QBP02746 253 aa11.58□□□□□ -0.56
SHKBP1-223ENST00000600552 AKR1C3P42330 323 aa11.58□□□□□ -0.56
SHKBP1-223ENST00000600552 ZFP82Q8N141 532 aa11.58□□□□□ -0.56
SHKBP1-223ENST00000600552 COX11Q9Y6N1 276 aa11.58□□□□□ -0.56
SHKBP1-223ENST00000600552 FHITP49789 147 aa11.57□□□□□ -0.56
SHKBP1-223ENST00000600552 RPL36AP83881 106 aaKnown RBP11.57□□□□□ -0.56
SHKBP1-223ENST00000600552 DNLZQ5SXM8 178 aa11.57□□□□□ -0.56
SHKBP1-223ENST00000600552 Q8N976 141 aa11.57□□□□□ -0.56
SHKBP1-223ENST00000600552 RPL36ALQ969Q0 106 aaKnown RBP11.57□□□□□ -0.56
SHKBP1-223ENST00000600552 MUC21A0A0G2JKD1 596 aa11.56□□□□□ -0.56
SHKBP1-223ENST00000600552 MUC21A0A140T8X8 626 aa11.56□□□□□ -0.56
SHKBP1-223ENST00000600552 SMLR1H3BR10 107 aa11.56□□□□□ -0.56
SHKBP1-223ENST00000600552 PAGE4O60829 102 aa11.56□□□□□ -0.56
SHKBP1-223ENST00000600552 SEC11BP0C7V7 166 aa11.56□□□□□ -0.56
SHKBP1-223ENST00000600552 RPL19P84098 196 aaKnown RBP11.56□□□□□ -0.56
SHKBP1-223ENST00000600552 ZNF674Q2M3X9 581 aa11.56□□□□□ -0.56
SHKBP1-223ENST00000600552 LINC01559Q495D7 138 aa11.56□□□□□ -0.56
SHKBP1-223ENST00000600552 CYTL1Q9NRR1 136 aa11.56□□□□□ -0.56
SHKBP1-223ENST00000600552 LTAP01374 205 aa11.55□□□□□ -0.56
SHKBP1-223ENST00000600552 ELOBQ15370 118 aa11.55□□□□□ -0.56
SHKBP1-223ENST00000600552 ZNF56Q15929 161 aa11.55□□□□□ -0.56
SHKBP1-223ENST00000600552 UBE2D3P61077 147 aa11.54□□□□□ -0.56
SHKBP1-223ENST00000600552 UBE2D2P62837 147 aa11.54□□□□□ -0.56
SHKBP1-223ENST00000600552 Q6ZSA8 131 aa11.54□□□□□ -0.56
SHKBP1-223ENST00000600552 SCXQ7RTU7 201 aa11.54□□□□□ -0.56
SHKBP1-223ENST00000600552 C15orf54Q8N8G6 183 aa11.54□□□□□ -0.56
SHKBP1-223ENST00000600552 TRBV7-3A0A075B6L6 115 aa11.53□□□□□ -0.56
SHKBP1-223ENST00000600552 F5H697 171 aa11.53□□□□□ -0.56
SHKBP1-223ENST00000600552 COX8CQ7Z4L0 72 aa11.53□□□□□ -0.56
SHKBP1-223ENST00000600552 FAM213BQ8TBF2 198 aa11.53□□□□□ -0.56
SHKBP1-223ENST00000600552 SFT2D1Q8WV19 159 aa11.53□□□□□ -0.56
SHKBP1-223ENST00000600552 TRBV10-1A0A0K0K1A3 114 aa11.52□□□□□ -0.57
SHKBP1-223ENST00000600552 G3V3Q6 166 aa11.52□□□□□ -0.57
SHKBP1-223ENST00000600552 PRR27Q6MZM9 219 aa11.52□□□□□ -0.57
SHKBP1-223ENST00000600552 OR10AG1Q8NH19 301 aa11.52□□□□□ -0.57
SHKBP1-223ENST00000600552 TRBV6-1A0A0K0K1D8 114 aa11.51□□□□□ -0.57
SHKBP1-223ENST00000600552 SCO2A0A1W2PP80 73 aa11.51□□□□□ -0.57
SHKBP1-223ENST00000600552 CRPP02741 224 aa11.51□□□□□ -0.57
SHKBP1-223ENST00000600552 CHCHD5Q9BSY4 110 aa11.51□□□□□ -0.57
SHKBP1-223ENST00000600552 C1orf43Q9BWL3 253 aa11.51□□□□□ -0.57
SHKBP1-223ENST00000600552 ZNF471Q9BX82 626 aaPredicted RBP11.51□□□□□ -0.57
SHKBP1-223ENST00000600552 PFDN1O60925 122 aa11.5□□□□□ -0.57
SHKBP1-223ENST00000600552 ANGP03950 147 aaKnown RBP11.5□□□□□ -0.57
SHKBP1-223ENST00000600552 RAB4BP61018 213 aa11.5□□□□□ -0.57
SHKBP1-223ENST00000600552 Q0VG73 95 aa11.5□□□□□ -0.57
SHKBP1-223ENST00000600552 SPANXN1Q5VSR9 72 aa11.5□□□□□ -0.57
SHKBP1-223ENST00000600552 BAGE2Q86Y30 109 aa11.5□□□□□ -0.57
SHKBP1-223ENST00000600552 NEXN-AS1Q8NBZ9 246 aa11.5□□□□□ -0.57
SHKBP1-223ENST00000600552 TCEAL7Q9BRU2 100 aa11.5□□□□□ -0.57
SHKBP1-223ENST00000600552 TRBV6-8A0A0A6YYG3 113 aa11.49□□□□□ -0.57
SHKBP1-223ENST00000600552 DEFB104AQ8WTQ1 72 aa11.49□□□□□ -0.57
SHKBP1-223ENST00000600552 CHCHD7Q9BUK0 85 aa11.49□□□□□ -0.57
SHKBP1-223ENST00000600552 HLA-DQA1P01909 254 aa11.48□□□□□ -0.57
SHKBP1-223ENST00000600552 S100A9P06702 114 aaKnown RBP11.48□□□□□ -0.57
SHKBP1-223ENST00000600552 RGS21Q2M5E4 152 aa11.48□□□□□ -0.57
SHKBP1-223ENST00000600552 MPV17L2Q567V2 206 aa11.48□□□□□ -0.57
SHKBP1-223ENST00000600552 ENHOQ6UWT2 76 aa11.48□□□□□ -0.57
SHKBP1-223ENST00000600552 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.48□□□□□ -0.57
SHKBP1-223ENST00000600552 CHAC1Q9BUX1 264 aa11.48□□□□□ -0.57
SHKBP1-223ENST00000600552 IGLV2-8P01709 118 aa11.47□□□□□ -0.57
SHKBP1-223ENST00000600552 CLPSL2Q6UWE3 100 aa11.47□□□□□ -0.57
SHKBP1-223ENST00000600552 OR10G8Q8NGN5 311 aa11.47□□□□□ -0.57
SHKBP1-223ENST00000600552 CIRBP-AS1Q8TBR5 109 aa11.47□□□□□ -0.57
SHKBP1-223ENST00000600552 TPPP3Q9BW30 176 aa11.47□□□□□ -0.57
SHKBP1-223ENST00000600552 SMIM17P0DL12 118 aa11.46□□□□□ -0.57
SHKBP1-223ENST00000600552 GAGE6Q13070 117 aa11.46□□□□□ -0.57
SHKBP1-223ENST00000600552 C14orf177Q52M58 125 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms