RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 TOR2AQ5JU69 321 aa7.14□□□□□ -1.27
LIG3-212ENST00000590181 Q6ZNX1 250 aa7.14□□□□□ -1.27
LIG3-212ENST00000590181 SPATA12Q7Z6I5 190 aa7.14□□□□□ -1.27
LIG3-212ENST00000590181 C11orf52Q96A22 123 aa7.14□□□□□ -1.27
LIG3-212ENST00000590181 KRTAP1-5Q9BYS1 174 aa7.14□□□□□ -1.27
LIG3-212ENST00000590181 COX11Q9Y6N1 276 aa7.14□□□□□ -1.27
LIG3-212ENST00000590181 OR5AL1P0C617 328 aa7.13□□□□□ -1.27
LIG3-212ENST00000590181 RPS20P60866 119 aaKnown RBP7.13□□□□□ -1.27
LIG3-212ENST00000590181 OR10J3Q5JRS4 329 aa7.13□□□□□ -1.27
LIG3-212ENST00000590181 DMRTA1Q5VZB9 504 aa7.13□□□□□ -1.27
LIG3-212ENST00000590181 UFSP1Q6NVU6 142 aa7.13□□□□□ -1.27
LIG3-212ENST00000590181 Q6ZRN7 208 aaPredicted RBP7.13□□□□□ -1.27
LIG3-212ENST00000590181 CHCHD7Q9BUK0 85 aa7.13□□□□□ -1.27
LIG3-212ENST00000590181 SSBP4Q9BWG4 385 aaPredicted RBP7.13□□□□□ -1.27
LIG3-212ENST00000590181 IBA57-AS1B1ANH7 110 aa7.12□□□□□ -1.27
LIG3-212ENST00000590181 H3BVH4 76 aa7.12□□□□□ -1.27
LIG3-212ENST00000590181 RPL35P42766 123 aaKnown RBP7.12□□□□□ -1.27
LIG3-212ENST00000590181 RAB4BP61018 213 aa7.12□□□□□ -1.27
LIG3-212ENST00000590181 PKIAP61925 76 aa7.12□□□□□ -1.27
LIG3-212ENST00000590181 MEF2BQ02080 365 aaPredicted RBP7.12□□□□□ -1.27
LIG3-212ENST00000590181 AKAP14Q86UN6 197 aa7.12□□□□□ -1.27
LIG3-212ENST00000590181 DAZAP1Q96EP5 407 aaKnown RBP7.12□□□□□ -1.27
LIG3-212ENST00000590181 TM2D2Q9BX73 214 aa7.12□□□□□ -1.27
LIG3-212ENST00000590181 TRAV8-3A0A0A6YYJ7 113 aa7.11□□□□□ -1.27
LIG3-212ENST00000590181 SCO2A0A1W2PP80 73 aa7.11□□□□□ -1.27
LIG3-212ENST00000590181 F2Z2F3 143 aa7.11□□□□□ -1.27
LIG3-212ENST00000590181 M0R036 132 aa7.11□□□□□ -1.27
LIG3-212ENST00000590181 SNAI2O43623 268 aa7.11□□□□□ -1.27
LIG3-212ENST00000590181 NDUFS6O75380 124 aaKnown RBP7.11□□□□□ -1.27
LIG3-212ENST00000590181 BLOC1S1P78537 153 aa7.11□□□□□ -1.27
LIG3-212ENST00000590181 CCL20P78556 96 aa7.11□□□□□ -1.27
LIG3-212ENST00000590181 RPL36AP83881 106 aaKnown RBP7.11□□□□□ -1.27
LIG3-212ENST00000590181 ELOBQ15370 118 aa7.11□□□□□ -1.27
LIG3-212ENST00000590181 TMEM97Q5BJF2 176 aa7.11□□□□□ -1.27
LIG3-212ENST00000590181 WFDC10BQ8IUB3 73 aa7.11□□□□□ -1.27
LIG3-212ENST00000590181 RPL36ALQ969Q0 106 aaKnown RBP7.11□□□□□ -1.27
LIG3-212ENST00000590181 GNG13Q9P2W3 67 aa7.11□□□□□ -1.27
LIG3-212ENST00000590181 VAX2Q9UIW0 290 aa7.11□□□□□ -1.27
LIG3-212ENST00000590181 TRBV7-3A0A075B6L6 115 aa7.1□□□□□ -1.27
LIG3-212ENST00000590181 EPM2AB3EWF7 344 aa7.1□□□□□ -1.27
LIG3-212ENST00000590181 LINC00694P0DN24 101 aa7.1□□□□□ -1.27
LIG3-212ENST00000590181 GNG4P50150 75 aa7.1□□□□□ -1.27
LIG3-212ENST00000590181 WDR73Q6P4I2 378 aa7.1□□□□□ -1.27
LIG3-212ENST00000590181 KCNIP4Q6PIL6 250 aa7.1□□□□□ -1.27
LIG3-212ENST00000590181 URGCP-MRPS24S4R325 110 aa7.1□□□□□ -1.27
LIG3-212ENST00000590181 IGHV3-73A0A0B4J1V6 119 aa7.09□□□□□ -1.27
LIG3-212ENST00000590181 LOC100131303A0A0U1RQF7 123 aa7.09□□□□□ -1.27
LIG3-212ENST00000590181 GRIFINA4D1Z8 144 aa7.09□□□□□ -1.27
LIG3-212ENST00000590181 M0R381 172 aa7.09□□□□□ -1.27
LIG3-212ENST00000590181 PSCAO43653 123 aa7.09□□□□□ -1.27
LIG3-212ENST00000590181 SMIM17P0DL12 118 aa7.09□□□□□ -1.27
LIG3-212ENST00000590181 BCL2P10415 239 aa7.09□□□□□ -1.27
LIG3-212ENST00000590181 KRTAP10-2P60368 255 aa7.09□□□□□ -1.27
LIG3-212ENST00000590181 CACNG7P62955 275 aa7.09□□□□□ -1.27
LIG3-212ENST00000590181 SPANXN1Q5VSR9 72 aa7.09□□□□□ -1.27
LIG3-212ENST00000590181 OR10G8Q8NGN5 311 aa7.09□□□□□ -1.27
LIG3-212ENST00000590181 NTN5Q8WTR8 489 aaPredicted RBP7.09□□□□□ -1.27
LIG3-212ENST00000590181 RMI2Q96E14 147 aa7.09□□□□□ -1.27
LIG3-212ENST00000590181 FAT1Q14517 4588 aa7.09□□□□□ -1.27
LIG3-212ENST00000590181 SRRM2Q9UQ35 2752 aaKnown RBP7.09□□□□□ -1.27
LIG3-212ENST00000590181 H7C1H1 209 aa7.08□□□□□ -1.28
LIG3-212ENST00000590181 INAFM2P0DMQ5 153 aa7.08□□□□□ -1.28
LIG3-212ENST00000590181 FAM74A4Q5TZK3 123 aa7.08□□□□□ -1.28
LIG3-212ENST00000590181 Q6ZSN1 163 aa7.08□□□□□ -1.28
LIG3-212ENST00000590181 A0A087WTM6 91 aa7.07□□□□□ -1.28
LIG3-212ENST00000590181 A0A1B0GV50 99 aa7.07□□□□□ -1.28
LIG3-212ENST00000590181 GAGE12JA6NER3 117 aa7.07□□□□□ -1.28
LIG3-212ENST00000590181 TMEM250H0YL14 139 aa7.07□□□□□ -1.28
LIG3-212ENST00000590181 P01737 135 aa7.07□□□□□ -1.28
LIG3-212ENST00000590181 Q0VG73 95 aa7.07□□□□□ -1.28
LIG3-212ENST00000590181 GAGE1Q13065 139 aa7.07□□□□□ -1.28
LIG3-212ENST00000590181 GAGE4Q13068 117 aa7.07□□□□□ -1.28
LIG3-212ENST00000590181 GAGE5Q13069 117 aa7.07□□□□□ -1.28
LIG3-212ENST00000590181 GAGE13Q4V321 117 aa7.07□□□□□ -1.28
LIG3-212ENST00000590181 PRR27Q6MZM9 219 aa7.07□□□□□ -1.28
LIG3-212ENST00000590181 DAZ4Q86SG3 579 aaKnown RBP7.07□□□□□ -1.28
LIG3-212ENST00000590181 DNAJC30Q96LL9 226 aa7.07□□□□□ -1.28
LIG3-212ENST00000590181 AP1S3Q96PC3 154 aa7.07□□□□□ -1.28
LIG3-212ENST00000590181 SAMD10Q9BYL1 202 aa7.07□□□□□ -1.28
LIG3-212ENST00000590181 DAZ3Q9NR90 486 aaKnown RBP7.07□□□□□ -1.28
LIG3-212ENST00000590181 MED9Q9NWA0 146 aa7.07□□□□□ -1.28
LIG3-212ENST00000590181 TMSB15BA0A087X1C1 80 aa7.06□□□□□ -1.28
LIG3-212ENST00000590181 C19orf71A6NCJ1 209 aa7.06□□□□□ -1.28
LIG3-212ENST00000590181 UBE2D3P61077 147 aa7.06□□□□□ -1.28
LIG3-212ENST00000590181 UBE2D2P62837 147 aa7.06□□□□□ -1.28
LIG3-212ENST00000590181 CENPWQ5EE01 88 aa7.06□□□□□ -1.28
LIG3-212ENST00000590181 LYPD6BQ8NI32 183 aa7.06□□□□□ -1.28
LIG3-212ENST00000590181 FRZBQ92765 325 aa7.06□□□□□ -1.28
LIG3-212ENST00000590181 FAM210AQ96ND0 272 aa7.06□□□□□ -1.28
LIG3-212ENST00000590181 JPT2Q9H910 190 aa7.06□□□□□ -1.28
LIG3-212ENST00000590181 FLG2Q5D862 2391 aaPredicted RBP7.05□□□□□ -1.28
LIG3-212ENST00000590181 A0A087WWL8 130 aa7.05□□□□□ -1.28
LIG3-212ENST00000590181 A0A087WX48 190 aa7.05□□□□□ -1.28
LIG3-212ENST00000590181 TRGC1P0CF51 173 aa7.05□□□□□ -1.28
LIG3-212ENST00000590181 Q5VSD8 79 aa7.05□□□□□ -1.28
LIG3-212ENST00000590181 C9orf62Q8N4C0 152 aa7.05□□□□□ -1.28
LIG3-212ENST00000590181 C14orf178Q8N769 122 aaPredicted RBP7.05□□□□□ -1.28
LIG3-212ENST00000590181 FER1L6-AS1Q8NA97 138 aa7.05□□□□□ -1.28
LIG3-212ENST00000590181 OR2D3Q8NGH3 330 aa7.05□□□□□ -1.28
LIG3-212ENST00000590181 OR10AG1Q8NH19 301 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms