RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 RPL39LQ96EH5 51 aaKnown RBP5.53□□□□□ -1.52
ZNF540-206ENST00000589117 CHAC1Q9BUX1 264 aa5.53□□□□□ -1.52
ZNF540-206ENST00000589117 ABCA2Q9BZC7 2435 aa5.52□□□□□ -1.53
ZNF540-206ENST00000589117 DOPEY1Q5JWR5 2465 aa5.52□□□□□ -1.53
ZNF540-206ENST00000589117 FABP2P12104 132 aa5.52□□□□□ -1.53
ZNF540-206ENST00000589117 SCGB2A2Q13296 93 aa5.52□□□□□ -1.53
ZNF540-206ENST00000589117 FOXI2Q6ZQN5 318 aa5.52□□□□□ -1.53
ZNF540-206ENST00000589117 NEXN-AS1Q8NBZ9 246 aa5.52□□□□□ -1.53
ZNF540-206ENST00000589117 NRGNQ92686 78 aa5.52□□□□□ -1.53
ZNF540-206ENST00000589117 TMEM141Q96I45 108 aa5.52□□□□□ -1.53
ZNF540-206ENST00000589117 PIEZO1Q92508 2521 aa5.52□□□□□ -1.53
ZNF540-206ENST00000589117 TRGV11A0A075B6L2 103 aa5.52□□□□□ -1.53
ZNF540-206ENST00000589117 IGKV2D-26A0A0A0MRZ7 120 aa5.52□□□□□ -1.53
ZNF540-206ENST00000589117 GAGE12BA1L429 117 aa5.52□□□□□ -1.53
ZNF540-206ENST00000589117 H3BUT2 72 aa5.52□□□□□ -1.53
ZNF540-206ENST00000589117 HOXD3P31249 432 aaPredicted RBP5.52□□□□□ -1.53
ZNF540-206ENST00000589117 HERVK_113P61574 105 aa5.52□□□□□ -1.53
ZNF540-206ENST00000589117 LRRC75A-AS1Q8N1F1 130 aa5.52□□□□□ -1.53
ZNF540-206ENST00000589117 OR5A1Q8NGJ0 315 aa5.52□□□□□ -1.53
ZNF540-206ENST00000589117 IGHV1OR15-1A0A075B7D0 117 aa5.51□□□□□ -1.53
ZNF540-206ENST00000589117 A0A096LNT2 108 aa5.51□□□□□ -1.53
ZNF540-206ENST00000589117 CEND1Q8N111 149 aa5.51□□□□□ -1.53
ZNF540-206ENST00000589117 HIST1H4GQ99525 98 aa5.51□□□□□ -1.53
ZNF540-206ENST00000589117 TM2D2Q9BX73 214 aa5.51□□□□□ -1.53
ZNF540-206ENST00000589117 KIF25-AS1Q9Y6Z4 181 aa5.51□□□□□ -1.53
ZNF540-206ENST00000589117 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP5.51□□□□□ -1.53
ZNF540-206ENST00000589117 IGHV3-16A0A0C4DH30 117 aa5.51□□□□□ -1.53
ZNF540-206ENST00000589117 K7ERU9 68 aa5.51□□□□□ -1.53
ZNF540-206ENST00000589117 IGKV3-20P01619 116 aa5.51□□□□□ -1.53
ZNF540-206ENST00000589117 BAALCQ8WXS3 180 aa5.51□□□□□ -1.53
ZNF540-206ENST00000589117 RAB37Q96AX2 223 aa5.51□□□□□ -1.53
ZNF540-206ENST00000589117 C9orf85Q96MD7 179 aa5.51□□□□□ -1.53
ZNF540-206ENST00000589117 COL12A1Q99715 3063 aa5.5□□□□□ -1.53
ZNF540-206ENST00000589117 TRBV6-5A0A0K0K1A5 114 aa5.5□□□□□ -1.53
ZNF540-206ENST00000589117 TRBV27A0A0K0K1C4 114 aa5.5□□□□□ -1.53
ZNF540-206ENST00000589117 MYMXA0A1B0GTQ4 84 aa5.5□□□□□ -1.53
ZNF540-206ENST00000589117 A0A1W2PPM0 123 aa5.5□□□□□ -1.53
ZNF540-206ENST00000589117 SDHAF1A6NFY7 115 aa5.5□□□□□ -1.53
ZNF540-206ENST00000589117 FSHBP01225 129 aa5.5□□□□□ -1.53
ZNF540-206ENST00000589117 IGHV4-31P0DP07 118 aa5.5□□□□□ -1.53
ZNF540-206ENST00000589117 POLR2KP53803 58 aaKnown RBP5.5□□□□□ -1.53
ZNF540-206ENST00000589117 PMVKQ15126 192 aa5.5□□□□□ -1.53
ZNF540-206ENST00000589117 ZNF56Q15929 161 aa5.5□□□□□ -1.53
ZNF540-206ENST00000589117 DEFB113Q30KQ7 82 aa5.5□□□□□ -1.53
ZNF540-206ENST00000589117 TCTEX1D4Q5JR98 221 aa5.5□□□□□ -1.53
ZNF540-206ENST00000589117 FAM74A4Q5TZK3 123 aa5.5□□□□□ -1.53
ZNF540-206ENST00000589117 HIST2H2BCQ6DN03 193 aa5.5□□□□□ -1.53
ZNF540-206ENST00000589117 HIST2H2BDQ6DRA6 164 aa5.5□□□□□ -1.53
ZNF540-206ENST00000589117 SUMO4Q6EEV6 95 aa5.5□□□□□ -1.53
ZNF540-206ENST00000589117 TRPT1Q86TN4 253 aaKnown RBP5.5□□□□□ -1.53
ZNF540-206ENST00000589117 ZNF702PQ9H963 129 aa5.5□□□□□ -1.53
ZNF540-206ENST00000589117 SPG11Q96JI7 2443 aa5.5□□□□□ -1.53
ZNF540-206ENST00000589117 CACNA1AO00555 2505 aa5.5□□□□□ -1.53
ZNF540-206ENST00000589117 TRAV2A0A0B4J234 112 aa5.49□□□□□ -1.53
ZNF540-206ENST00000589117 A8MZ25 164 aa5.49□□□□□ -1.53
ZNF540-206ENST00000589117 E9PLD3 99 aa5.49□□□□□ -1.53
ZNF540-206ENST00000589117 LINC01619G3V211 115 aa5.49□□□□□ -1.53
ZNF540-206ENST00000589117 LINC00315P59091 139 aa5.49□□□□□ -1.53
ZNF540-206ENST00000589117 ZFP2Q6ZN57 461 aa5.49□□□□□ -1.53
ZNF540-206ENST00000589117 MAPK1IP1LQ8NDC0 245 aa5.49□□□□□ -1.53
ZNF540-206ENST00000589117 TIMM17AQ99595 171 aa5.49□□□□□ -1.53
ZNF540-206ENST00000589117 CST9LQ9H4G1 147 aa5.49□□□□□ -1.53
ZNF540-206ENST00000589117 SELENOKQ9Y6D0 94 aa5.49□□□□□ -1.53
ZNF540-206ENST00000589117 K7EP34 96 aa5.49□□□□□ -1.53
ZNF540-206ENST00000589117 RHOHQ15669 191 aa5.49□□□□□ -1.53
ZNF540-206ENST00000589117 SPINK13Q1W4C9 94 aa5.49□□□□□ -1.53
ZNF540-206ENST00000589117 ZNF876PQ49A33 203 aa5.49□□□□□ -1.53
ZNF540-206ENST00000589117 C10orf99Q6UWK7 81 aa5.49□□□□□ -1.53
ZNF540-206ENST00000589117 DUX5Q96PT3 197 aa5.49□□□□□ -1.53
ZNF540-206ENST00000589117 TP53TG1Q9Y2A0 90 aa5.49□□□□□ -1.53
ZNF540-206ENST00000589117 SPCS1Q9Y6A9 102 aa5.49□□□□□ -1.53
ZNF540-206ENST00000589117 TRAV12-2A0A075B6T6 113 aa5.48□□□□□ -1.53
ZNF540-206ENST00000589117 Q5PR19 223 aa5.48□□□□□ -1.53
ZNF540-206ENST00000589117 SCGB1D4Q6XE38 83 aa5.48□□□□□ -1.53
ZNF540-206ENST00000589117 Q8N2B8 174 aa5.48□□□□□ -1.53
ZNF540-206ENST00000589117 NHP2Q9NX24 153 aaKnown RBP5.48□□□□□ -1.53
ZNF540-206ENST00000589117 MDFICQ9P1T7 246 aa5.48□□□□□ -1.53
ZNF540-206ENST00000589117 FXYD2P54710 66 aa5.48□□□□□ -1.53
ZNF540-206ENST00000589117 RIPPLY3P57055 190 aa5.48□□□□□ -1.53
ZNF540-206ENST00000589117 OCIAD2Q56VL3 154 aa5.48□□□□□ -1.53
ZNF540-206ENST00000589117 TMEM86BQ8N661 226 aa5.48□□□□□ -1.53
ZNF540-206ENST00000589117 IGIPA6NJ69 53 aa5.47□□□□□ -1.53
ZNF540-206ENST00000589117 I3L3M4 83 aa5.47□□□□□ -1.53
ZNF540-206ENST00000589117 M0QY20 66 aa5.47□□□□□ -1.53
ZNF540-206ENST00000589117 PRYO14603 147 aa5.47□□□□□ -1.53
ZNF540-206ENST00000589117 PRB1P04280 392 aa5.47□□□□□ -1.53
ZNF540-206ENST00000589117 SLURP1P55000 103 aa5.47□□□□□ -1.53
ZNF540-206ENST00000589117 PIK3CD-AS1Q5SR53 167 aa5.47□□□□□ -1.53
ZNF540-206ENST00000589117 UFSP1Q6NVU6 142 aa5.47□□□□□ -1.53
ZNF540-206ENST00000589117 MAPKAPK5-AS1Q8N8E1 139 aa5.47□□□□□ -1.53
ZNF540-206ENST00000589117 RNASE8Q8TDE3 154 aaKnown RBP5.47□□□□□ -1.53
ZNF540-206ENST00000589117 DYNLRB2Q8TF09 96 aa5.47□□□□□ -1.53
ZNF540-206ENST00000589117 C4orf3Q8WVX3 66 aa5.47□□□□□ -1.53
ZNF540-206ENST00000589117 TTTY13Q9BZ97 58 aa5.47□□□□□ -1.53
ZNF540-206ENST00000589117 JPT2Q9H910 190 aa5.47□□□□□ -1.53
ZNF540-206ENST00000589117 CFAP46Q8IYW2 2715 aa5.47□□□□□ -1.53
ZNF540-206ENST00000589117 ZNF815PA8K554 130 aa5.47□□□□□ -1.53
ZNF540-206ENST00000589117 CRYGDP07320 174 aa5.47□□□□□ -1.53
ZNF540-206ENST00000589117 SRSF9Q13242 221 aaKnown RBP eCLIP5.47□□□□□ -1.53
ZNF540-206ENST00000589117 NSUN5P1Q3KNT7 163 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms