RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 ARMS2P0C7Q2 107 aa7.76□□□□□ -1.17
LIG3-209ENST00000586435 ELOBQ15370 118 aa7.76□□□□□ -1.17
LIG3-209ENST00000586435 LINC01620Q4KN68 170 aa7.76□□□□□ -1.17
LIG3-209ENST00000586435 SERTAD4-AS1Q5TG53 156 aa7.76□□□□□ -1.17
LIG3-209ENST00000586435 HIST1H2BAQ96A08 127 aa7.76□□□□□ -1.17
LIG3-209ENST00000586435 SFRP2Q96HF1 295 aa7.76□□□□□ -1.17
LIG3-209ENST00000586435 KLK12Q9UKR0 248 aa7.76□□□□□ -1.17
LIG3-209ENST00000586435 ALG5Q9Y673 324 aa7.76□□□□□ -1.17
LIG3-209ENST00000586435 A0A087WX48 190 aa7.75□□□□□ -1.17
LIG3-209ENST00000586435 A6NHS1 94 aa7.75□□□□□ -1.17
LIG3-209ENST00000586435 OXTP01178 125 aa7.75□□□□□ -1.17
LIG3-209ENST00000586435 IFNA7P01567 189 aa7.75□□□□□ -1.17
LIG3-209ENST00000586435 IGLV2-8P01709 118 aa7.75□□□□□ -1.17
LIG3-209ENST00000586435 CRIP1P50238 77 aa7.75□□□□□ -1.17
LIG3-209ENST00000586435 Q0VG73 95 aa7.75□□□□□ -1.17
LIG3-209ENST00000586435 ZNF726P1Q15940 193 aa7.75□□□□□ -1.17
LIG3-209ENST00000586435 FAM74A4Q5TZK3 123 aa7.75□□□□□ -1.17
LIG3-209ENST00000586435 CIRBP-AS1Q8TBR5 109 aa7.75□□□□□ -1.17
LIG3-209ENST00000586435 UBE2WQ96B02 151 aa7.75□□□□□ -1.17
LIG3-209ENST00000586435 ZC2HC1AQ96GY0 325 aa7.75□□□□□ -1.17
LIG3-209ENST00000586435 DNAJC30Q96LL9 226 aa7.75□□□□□ -1.17
LIG3-209ENST00000586435 ZFP30Q9Y2G7 519 aa7.75□□□□□ -1.17
LIG3-209ENST00000586435 FAM74A7A6NL05 159 aa7.74□□□□□ -1.17
LIG3-209ENST00000586435 SH2D1AO60880 128 aa7.74□□□□□ -1.17
LIG3-209ENST00000586435 TPT1P13693 172 aaKnown RBP7.74□□□□□ -1.17
LIG3-209ENST00000586435 UBE2D3P61077 147 aa7.74□□□□□ -1.17
LIG3-209ENST00000586435 UBE2D2P62837 147 aa7.74□□□□□ -1.17
LIG3-209ENST00000586435 RPL36AP83881 106 aaKnown RBP7.74□□□□□ -1.17
LIG3-209ENST00000586435 LINC01559Q495D7 138 aa7.74□□□□□ -1.17
LIG3-209ENST00000586435 C14orf177Q52M58 125 aa7.74□□□□□ -1.17
LIG3-209ENST00000586435 FAM162BQ5T6X4 162 aa7.74□□□□□ -1.17
LIG3-209ENST00000586435 KCNIP4Q6PIL6 250 aa7.74□□□□□ -1.17
LIG3-209ENST00000586435 RPL36ALQ969Q0 106 aaKnown RBP7.74□□□□□ -1.17
LIG3-209ENST00000586435 PHLDA3Q9Y5J5 127 aa7.74□□□□□ -1.17
LIG3-209ENST00000586435 TRBV7-3A0A075B6L6 115 aa7.73□□□□□ -1.17
LIG3-209ENST00000586435 A0A087WWL8 130 aa7.73□□□□□ -1.17
LIG3-209ENST00000586435 BORCS7-ASMTA0A0B4J1R7 106 aa7.73□□□□□ -1.17
LIG3-209ENST00000586435 TRBV6-1A0A0K0K1D8 114 aa7.73□□□□□ -1.17
LIG3-209ENST00000586435 M0R036 132 aa7.73□□□□□ -1.17
LIG3-209ENST00000586435 UBE2G2P60604 165 aa7.73□□□□□ -1.17
LIG3-209ENST00000586435 ZNF674Q2M3X9 581 aa7.73□□□□□ -1.17
LIG3-209ENST00000586435 RPL7L1Q6DKI1 246 aaKnown RBP7.73□□□□□ -1.17
LIG3-209ENST00000586435 ZFP82Q8N141 532 aa7.73□□□□□ -1.17
LIG3-209ENST00000586435 OR10G8Q8NGN5 311 aa7.73□□□□□ -1.17
LIG3-209ENST00000586435 FMC1Q96HJ9 113 aa7.73□□□□□ -1.17
LIG3-209ENST00000586435 TCEAL7Q9BRU2 100 aa7.73□□□□□ -1.17
LIG3-209ENST00000586435 LRP1Q07954 4544 aaKnown RBP7.73□□□□□ -1.17
LIG3-209ENST00000586435 GRIFINA4D1Z8 144 aa7.72□□□□□ -1.17
LIG3-209ENST00000586435 INO80EQ8NBZ0 244 aaPredicted RBP7.72□□□□□ -1.17
LIG3-209ENST00000586435 C1orf43Q9BWL3 253 aa7.72□□□□□ -1.17
LIG3-209ENST00000586435 MED28Q9H204 178 aa7.72□□□□□ -1.17
LIG3-209ENST00000586435 TRBV6-8A0A0A6YYG3 113 aa7.71□□□□□ -1.18
LIG3-209ENST00000586435 M0R381 172 aa7.71□□□□□ -1.18
LIG3-209ENST00000586435 LTAP01374 205 aa7.71□□□□□ -1.18
LIG3-209ENST00000586435 GIPP09681 153 aaPredicted RBP7.71□□□□□ -1.18
LIG3-209ENST00000586435 UBE2G1P62253 170 aa7.71□□□□□ -1.18
LIG3-209ENST00000586435 Q5BKY6 102 aa7.71□□□□□ -1.18
LIG3-209ENST00000586435 PTTG1O95997 202 aa7.7□□□□□ -1.18
LIG3-209ENST00000586435 CRPP02741 224 aa7.7□□□□□ -1.18
LIG3-209ENST00000586435 FHITP49789 147 aa7.7□□□□□ -1.18
LIG3-209ENST00000586435 PKIAP61925 76 aa7.7□□□□□ -1.18
LIG3-209ENST00000586435 AKR1C8PQ5T2L2 129 aa7.7□□□□□ -1.18
LIG3-209ENST00000586435 PRR27Q6MZM9 219 aa7.7□□□□□ -1.18
LIG3-209ENST00000586435 ENHOQ6UWT2 76 aa7.7□□□□□ -1.18
LIG3-209ENST00000586435 FAT3Q8TDW7 4589 aa7.69□□□□□ -1.18
LIG3-209ENST00000586435 MAP1LC3B2A6NCE7 125 aa7.69□□□□□ -1.18
LIG3-209ENST00000586435 CXCL1P09341 107 aa7.69□□□□□ -1.18
LIG3-209ENST00000586435 RAB4BP61018 213 aa7.69□□□□□ -1.18
LIG3-209ENST00000586435 MPV17L2Q567V2 206 aa7.69□□□□□ -1.18
LIG3-209ENST00000586435 NEXN-AS1Q8NBZ9 246 aa7.69□□□□□ -1.18
LIG3-209ENST00000586435 MAP1LC3BQ9GZQ8 125 aa7.69□□□□□ -1.18
LIG3-209ENST00000586435 HMCN2Q8NDA2 5059 aa7.68□□□□□ -1.18
LIG3-209ENST00000586435 FXYD6-FXYD2A0A087WZ82 144 aa7.68□□□□□ -1.18
LIG3-209ENST00000586435 TMSB15BA0A087X1C1 80 aa7.68□□□□□ -1.18
LIG3-209ENST00000586435 TMEM262E9PQX1 116 aa7.68□□□□□ -1.18
LIG3-209ENST00000586435 MIAQ16674 131 aa7.68□□□□□ -1.18
LIG3-209ENST00000586435 C15orf54Q8N8G6 183 aa7.68□□□□□ -1.18
LIG3-209ENST00000586435 PKHD1L1Q86WI1 4243 aa7.68□□□□□ -1.18
LIG3-209ENST00000586435 USP17L23D6RBM5 183 aa7.67□□□□□ -1.18
LIG3-209ENST00000586435 ANGP03950 147 aaKnown RBP7.67□□□□□ -1.18
LIG3-209ENST00000586435 AKR1C3P42330 323 aa7.67□□□□□ -1.18
LIG3-209ENST00000586435 RPL37AP61513 92 aaKnown RBP7.67□□□□□ -1.18
LIG3-209ENST00000586435 ZNF56Q15929 161 aa7.67□□□□□ -1.18
LIG3-209ENST00000586435 TMEM97Q5BJF2 176 aa7.67□□□□□ -1.18
LIG3-209ENST00000586435 DGAT2L7PQ6IED9 249 aa7.67□□□□□ -1.18
LIG3-209ENST00000586435 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.67□□□□□ -1.18
LIG3-209ENST00000586435 OR10AG1Q8NH19 301 aa7.67□□□□□ -1.18
LIG3-209ENST00000586435 VAX2Q9UIW0 290 aa7.67□□□□□ -1.18
LIG3-209ENST00000586435 SNAI2O43623 268 aa7.66□□□□□ -1.18
LIG3-209ENST00000586435 HLA-DQA1P01909 254 aa7.66□□□□□ -1.18
LIG3-209ENST00000586435 CST9LP1Q5W188 147 aa7.66□□□□□ -1.18
LIG3-209ENST00000586435 C9orf163Q8N9P6 203 aa7.66□□□□□ -1.18
LIG3-209ENST00000586435 STOML3Q8TAV4 291 aa7.66□□□□□ -1.18
LIG3-209ENST00000586435 SSBP4Q9BWG4 385 aaPredicted RBP7.66□□□□□ -1.18
LIG3-209ENST00000586435 ZNF471Q9BX82 626 aaPredicted RBP7.66□□□□□ -1.18
LIG3-209ENST00000586435 PRR34Q9NV39 138 aa7.66□□□□□ -1.18
LIG3-209ENST00000586435 PLA2G2DQ9UNK4 145 aa7.66□□□□□ -1.18
LIG3-209ENST00000586435 S100A9P06702 114 aaKnown RBP7.65□□□□□ -1.18
LIG3-209ENST00000586435 PRSS1P07477 247 aa7.65□□□□□ -1.18
LIG3-209ENST00000586435 OR5AL1P0C617 328 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms