RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 IGHV3-30P01768 117 aa14.4□□□□□ -0.1
SHMT1-210ENST00000583780 IGHV3-33P01772 117 aa14.4□□□□□ -0.1
SHMT1-210ENST00000583780 IGHV3-30-3P0DP02 117 aa14.4□□□□□ -0.1
SHMT1-210ENST00000583780 IGHV3-30-5P0DP03 117 aa14.4□□□□□ -0.1
SHMT1-210ENST00000583780 NHLRC2Q8NBF2 726 aa14.4□□□□□ -0.1
SHMT1-210ENST00000583780 M0R2P5 195 aa14.39□□□□□ -0.11
SHMT1-210ENST00000583780 IFNA1P01562 189 aa14.39□□□□□ -0.11
SHMT1-210ENST00000583780 SYT8Q8NBV8 401 aa14.39□□□□□ -0.11
SHMT1-210ENST00000583780 TRAV8-6A0A0B4J262 113 aa14.38□□□□□ -0.11
SHMT1-210ENST00000583780 SH2D1AO60880 128 aa14.38□□□□□ -0.11
SHMT1-210ENST00000583780 S100A9P06702 114 aaKnown RBP14.38□□□□□ -0.11
SHMT1-210ENST00000583780 OR10J3Q5JRS4 329 aa14.38□□□□□ -0.11
SHMT1-210ENST00000583780 IGKV3D-20A0A0C4DH25 116 aa14.37□□□□□ -0.11
SHMT1-210ENST00000583780 M0R036 132 aa14.37□□□□□ -0.11
SHMT1-210ENST00000583780 CRIP1P50238 77 aa14.37□□□□□ -0.11
SHMT1-210ENST00000583780 FAM162BQ5T6X4 162 aa14.37□□□□□ -0.11
SHMT1-210ENST00000583780 SLC25A29Q8N8R3 303 aa14.37□□□□□ -0.11
SHMT1-210ENST00000583780 B4DEV8 164 aa14.36□□□□□ -0.11
SHMT1-210ENST00000583780 S100A4P26447 101 aaKnown RBP14.36□□□□□ -0.11
SHMT1-210ENST00000583780 COX8CQ7Z4L0 72 aa14.36□□□□□ -0.11
SHMT1-210ENST00000583780 OXTP01178 125 aa14.35□□□□□ -0.11
SHMT1-210ENST00000583780 BCL2P10415 239 aa14.35□□□□□ -0.11
SHMT1-210ENST00000583780 RPL35P42766 123 aaKnown RBP14.35□□□□□ -0.11
SHMT1-210ENST00000583780 MEF2BQ02080 365 aaPredicted RBP14.35□□□□□ -0.11
SHMT1-210ENST00000583780 LINC01620Q4KN68 170 aa14.35□□□□□ -0.11
SHMT1-210ENST00000583780 LELP1Q5T871 98 aa14.35□□□□□ -0.11
SHMT1-210ENST00000583780 SCXQ7RTU7 201 aa14.35□□□□□ -0.11
SHMT1-210ENST00000583780 BAGE2Q86Y30 109 aa14.35□□□□□ -0.11
SHMT1-210ENST00000583780 Q8N3U1 123 aa14.35□□□□□ -0.11
SHMT1-210ENST00000583780 DERL1Q9BUN8 251 aa14.35□□□□□ -0.11
SHMT1-210ENST00000583780 TM2D2Q9BX73 214 aa14.35□□□□□ -0.11
SHMT1-210ENST00000583780 LECT2O14960 151 aa14.34□□□□□ -0.11
SHMT1-210ENST00000583780 ASIPP42127 132 aa14.34□□□□□ -0.11
SHMT1-210ENST00000583780 BLOC1S1P78537 153 aa14.34□□□□□ -0.11
SHMT1-210ENST00000583780 LAGE3Q14657 143 aa14.34□□□□□ -0.11
SHMT1-210ENST00000583780 ZNF674Q2M3X9 581 aa14.34□□□□□ -0.11
SHMT1-210ENST00000583780 C11orf52Q96A22 123 aa14.34□□□□□ -0.11
SHMT1-210ENST00000583780 C9orf85Q96MD7 179 aa14.34□□□□□ -0.11
SHMT1-210ENST00000583780 TMSB15BA0A087X1C1 80 aa14.33□□□□□ -0.12
SHMT1-210ENST00000583780 RNASE3P12724 160 aaKnown RBP14.33□□□□□ -0.12
SHMT1-210ENST00000583780 ZNF876PQ49A33 203 aa14.33□□□□□ -0.12
SHMT1-210ENST00000583780 IGLV2-33A0A075B6J2 118 aaPredicted RBP14.32□□□□□ -0.12
SHMT1-210ENST00000583780 GRIFINA4D1Z8 144 aa14.32□□□□□ -0.12
SHMT1-210ENST00000583780 KRBOX1C9JBD0 128 aa14.32□□□□□ -0.12
SHMT1-210ENST00000583780 PRR27Q6MZM9 219 aa14.32□□□□□ -0.12
SHMT1-210ENST00000583780 VAX2Q9UIW0 290 aa14.32□□□□□ -0.12
SHMT1-210ENST00000583780 PLA2G2DQ9UNK4 145 aa14.32□□□□□ -0.12
SHMT1-210ENST00000583780 TRBV6-4A0A1B0GX49 114 aa14.31□□□□□ -0.12
SHMT1-210ENST00000583780 H3BVH4 76 aa14.31□□□□□ -0.12
SHMT1-210ENST00000583780 RS1O15537 224 aa14.31□□□□□ -0.12
SHMT1-210ENST00000583780 PDE6DO43924 150 aa14.31□□□□□ -0.12
SHMT1-210ENST00000583780 GTSF1LQ9H1H1 148 aa14.31□□□□□ -0.12
SHMT1-210ENST00000583780 MED9Q9NWA0 146 aa14.31□□□□□ -0.12
SHMT1-210ENST00000583780 PGPEP1LA6NFU8 196 aa14.3□□□□□ -0.12
SHMT1-210ENST00000583780 LINC01559Q495D7 138 aa14.3□□□□□ -0.12
SHMT1-210ENST00000583780 CENPWQ5EE01 88 aa14.3□□□□□ -0.12
SHMT1-210ENST00000583780 ZNF506Q5JVG8 444 aa14.3□□□□□ -0.12
SHMT1-210ENST00000583780 CFAP126Q5VTH2 177 aa14.3□□□□□ -0.12
SHMT1-210ENST00000583780 PRADC1Q9BSG0 188 aa14.3□□□□□ -0.12
SHMT1-210ENST00000583780 MLST8Q9BVC4 326 aa14.3□□□□□ -0.12
SHMT1-210ENST00000583780 TAGLN2P37802 199 aaKnown RBP14.29□□□□□ -0.12
SHMT1-210ENST00000583780 ATP6V0E2Q8NHE4 81 aa14.29□□□□□ -0.12
SHMT1-210ENST00000583780 BAALCQ8WXS3 180 aa14.29□□□□□ -0.12
SHMT1-210ENST00000583780 CHAC1Q9BUX1 264 aa14.29□□□□□ -0.12
SHMT1-210ENST00000583780 RAB19A4D1S5 217 aa14.28□□□□□ -0.12
SHMT1-210ENST00000583780 MGST1P10620 155 aaKnown RBP14.28□□□□□ -0.12
SHMT1-210ENST00000583780 RHOHQ15669 191 aa14.28□□□□□ -0.12
SHMT1-210ENST00000583780 CIRBP-AS1Q8TBR5 109 aa14.28□□□□□ -0.12
SHMT1-210ENST00000583780 IL36BQ9NZH7 164 aa14.28□□□□□ -0.12
SHMT1-210ENST00000583780 TRAV8-3A0A0A6YYJ7 113 aa14.27□□□□□ -0.13
SHMT1-210ENST00000583780 IGHV3-73A0A0B4J1V6 119 aa14.27□□□□□ -0.13
SHMT1-210ENST00000583780 CIDEAO60543 219 aa14.27□□□□□ -0.13
SHMT1-210ENST00000583780 ARMS2P0C7Q2 107 aa14.27□□□□□ -0.13
SHMT1-210ENST00000583780 GNG4P50150 75 aa14.27□□□□□ -0.13
SHMT1-210ENST00000583780 RPL19P84098 196 aaKnown RBP14.27□□□□□ -0.13
SHMT1-210ENST00000583780 DAZ4Q86SG3 579 aaKnown RBP14.27□□□□□ -0.13
SHMT1-210ENST00000583780 DAZ3Q9NR90 486 aaKnown RBP14.27□□□□□ -0.13
SHMT1-210ENST00000583780 PTH2Q96A98 100 aa14.26□□□□□ -0.13
SHMT1-210ENST00000583780 DNLZQ5SXM8 178 aa14.25□□□□□ -0.13
SHMT1-210ENST00000583780 PKHD1L1Q86WI1 4243 aa14.25□□□□□ -0.13
SHMT1-210ENST00000583780 RBFOX3A6NFN3 312 aa14.24□□□□□ -0.13
SHMT1-210ENST00000583780 LYPD6BQ8NI32 183 aa14.24□□□□□ -0.13
SHMT1-210ENST00000583780 PHLDA3Q9Y5J5 127 aa14.24□□□□□ -0.13
SHMT1-210ENST00000583780 IGLV2-8P01709 118 aa14.23□□□□□ -0.13
SHMT1-210ENST00000583780 TOR2AQ5JU69 321 aa14.23□□□□□ -0.13
SHMT1-210ENST00000583780 DNAJC30Q96LL9 226 aa14.23□□□□□ -0.13
SHMT1-210ENST00000583780 Q9UF83 564 aa14.23□□□□□ -0.13
SHMT1-210ENST00000583780 TRBV20OR9-2A0A075B6H5 130 aa14.22□□□□□ -0.13
SHMT1-210ENST00000583780 M0R381 172 aa14.22□□□□□ -0.13
SHMT1-210ENST00000583780 LINC00694P0DN24 101 aa14.22□□□□□ -0.13
SHMT1-210ENST00000583780 DMRTA1Q5VZB9 504 aa14.22□□□□□ -0.13
SHMT1-210ENST00000583780 DAZAP1Q96EP5 407 aaKnown RBP14.22□□□□□ -0.13
SHMT1-210ENST00000583780 JPT2Q9H910 190 aa14.22□□□□□ -0.13
SHMT1-210ENST00000583780 A8MWV9 139 aa14.21□□□□□ -0.13
SHMT1-210ENST00000583780 CEBPGP53567 150 aa14.21□□□□□ -0.13
SHMT1-210ENST00000583780 Q8N976 141 aa14.21□□□□□ -0.13
SHMT1-210ENST00000583780 EIF5A2Q9GZV4 153 aaKnown RBP14.21□□□□□ -0.13
SHMT1-210ENST00000583780 PARLQ9H300 379 aa14.21□□□□□ -0.13
SHMT1-210ENST00000583780 PIK3CD-AS1Q5SR53 167 aa14.2□□□□□ -0.14
SHMT1-210ENST00000583780 ZFP82Q8N141 532 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms