RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 IGF2RP11717 2491 aa9.16□□□□□ -0.94
SHMT1-208ENST00000582352 H3BUA1 57 aa9.16□□□□□ -0.94
SHMT1-208ENST00000582352 POLR2KP53803 58 aaKnown RBP9.16□□□□□ -0.94
SHMT1-208ENST00000582352 SYT8Q8NBV8 401 aa9.16□□□□□ -0.94
SHMT1-208ENST00000582352 JPT2Q9H910 190 aa9.16□□□□□ -0.94
SHMT1-208ENST00000582352 DAZ1Q9NQZ3 744 aaKnown RBP9.16□□□□□ -0.94
SHMT1-208ENST00000582352 SDHAF1A6NFY7 115 aa9.16□□□□□ -0.94
SHMT1-208ENST00000582352 KLLNB2CW77 178 aa9.16□□□□□ -0.94
SHMT1-208ENST00000582352 LY6EQ16553 131 aa9.16□□□□□ -0.94
SHMT1-208ENST00000582352 ZFHX3Q15911 3703 aa9.15□□□□□ -0.94
SHMT1-208ENST00000582352 SRD5A1P18405 259 aa9.15□□□□□ -0.94
SHMT1-208ENST00000582352 UCNP55089 124 aa9.15□□□□□ -0.94
SHMT1-208ENST00000582352 TSPEAR-AS2P59090 65 aa9.15□□□□□ -0.95
SHMT1-208ENST00000582352 FAM74A4Q5TZK3 123 aa9.15□□□□□ -0.95
SHMT1-208ENST00000582352 ID1P41134 155 aa9.14□□□□□ -0.95
SHMT1-208ENST00000582352 CLEC2AQ6UVW9 174 aa9.14□□□□□ -0.95
SHMT1-208ENST00000582352 Q6ZS46 218 aa9.14□□□□□ -0.95
SHMT1-208ENST00000582352 NFE4Q86UQ8 179 aa9.14□□□□□ -0.95
SHMT1-208ENST00000582352 TRBV20-1A0A075B6N2 111 aa9.14□□□□□ -0.95
SHMT1-208ENST00000582352 IGHV3-30P01768 117 aa9.14□□□□□ -0.95
SHMT1-208ENST00000582352 IGHV3-30-5P0DP03 117 aa9.14□□□□□ -0.95
SHMT1-208ENST00000582352 LGALS3P17931 250 aaKnown RBP9.14□□□□□ -0.95
SHMT1-208ENST00000582352 TCTEX1D4Q5JR98 221 aa9.14□□□□□ -0.95
SHMT1-208ENST00000582352 TRAV12-3A0A0B4J271 114 aa9.13□□□□□ -0.95
SHMT1-208ENST00000582352 IGHG2P01859 326 aa9.13□□□□□ -0.95
SHMT1-208ENST00000582352 ZNF876PQ49A33 203 aa9.13□□□□□ -0.95
SHMT1-208ENST00000582352 SLC25A29Q8N8R3 303 aa9.13□□□□□ -0.95
SHMT1-208ENST00000582352 WFDC12Q8WWY7 111 aa9.13□□□□□ -0.95
SHMT1-208ENST00000582352 TRBV27A0A0K0K1C4 114 aa9.13□□□□□ -0.95
SHMT1-208ENST00000582352 J3QQQ9 107 aa9.13□□□□□ -0.95
SHMT1-208ENST00000582352 BRI3O95415 125 aa9.13□□□□□ -0.95
SHMT1-208ENST00000582352 TCL1BO95988 128 aa9.13□□□□□ -0.95
SHMT1-208ENST00000582352 TEN1Q86WV5 123 aa9.13□□□□□ -0.95
SHMT1-208ENST00000582352 C10orf126Q8N4M7 172 aa9.13□□□□□ -0.95
SHMT1-208ENST00000582352 ZNRF2Q8NHG8 242 aa9.13□□□□□ -0.95
SHMT1-208ENST00000582352 ZNF256Q9Y2P7 627 aaPredicted RBP9.13□□□□□ -0.95
SHMT1-208ENST00000582352 ABCA2Q9BZC7 2435 aa9.13□□□□□ -0.95
SHMT1-208ENST00000582352 HIVEP3Q5T1R4 2406 aa9.13□□□□□ -0.95
SHMT1-208ENST00000582352 H3BUX3 64 aa9.12□□□□□ -0.95
SHMT1-208ENST00000582352 CFC1BP0CG36 223 aa9.12□□□□□ -0.95
SHMT1-208ENST00000582352 CFC1P0CG37 223 aa9.12□□□□□ -0.95
SHMT1-208ENST00000582352 CKS1BP61024 79 aa9.12□□□□□ -0.95
SHMT1-208ENST00000582352 ZNF56Q15929 161 aa9.12□□□□□ -0.95
SHMT1-208ENST00000582352 PPDPFLQ8WWR9 84 aa9.12□□□□□ -0.95
SHMT1-208ENST00000582352 PTH2Q96A98 100 aa9.12□□□□□ -0.95
SHMT1-208ENST00000582352 LGALS9O00182 355 aa9.12□□□□□ -0.95
SHMT1-208ENST00000582352 TGFAP01135 160 aa9.12□□□□□ -0.95
SHMT1-208ENST00000582352 SCGB1C2P0DMR2 95 aa9.12□□□□□ -0.95
SHMT1-208ENST00000582352 CDIP1Q9H305 208 aa9.12□□□□□ -0.95
SHMT1-208ENST00000582352 PRO1854Q9UHT4 67 aa9.12□□□□□ -0.95
SHMT1-208ENST00000582352 TRBV6-5A0A0K0K1A5 114 aa9.11□□□□□ -0.95
SHMT1-208ENST00000582352 A8MWV9 139 aa9.11□□□□□ -0.95
SHMT1-208ENST00000582352 SPTAN1Q13813 2472 aaKnown RBP9.11□□□□□ -0.95
SHMT1-208ENST00000582352 IGHV4-39P01824 125 aa9.11□□□□□ -0.95
SHMT1-208ENST00000582352 SPINK8P0C7L1 97 aa9.1□□□□□ -0.95
SHMT1-208ENST00000582352 IGHV4-38-2P0DP08 117 aa9.1□□□□□ -0.95
SHMT1-208ENST00000582352 DCANP1Q8TF63 244 aa9.1□□□□□ -0.95
SHMT1-208ENST00000582352 CELSR1Q9NYQ6 3014 aa9.1□□□□□ -0.95
SHMT1-208ENST00000582352 EDN2P20800 178 aa9.1□□□□□ -0.95
SHMT1-208ENST00000582352 BLCAPP62952 87 aa9.1□□□□□ -0.95
SHMT1-208ENST00000582352 RHOHQ15669 191 aa9.1□□□□□ -0.95
SHMT1-208ENST00000582352 NSUN5P1Q3KNT7 163 aa9.1□□□□□ -0.95
SHMT1-208ENST00000582352 AMELXQ99217 191 aa9.1□□□□□ -0.95
SHMT1-208ENST00000582352 VCX2Q9H322 139 aa9.1□□□□□ -0.95
SHMT1-208ENST00000582352 A6NDX4 124 aa9.09□□□□□ -0.95
SHMT1-208ENST00000582352 FHL3Q13643 280 aa9.09□□□□□ -0.95
SHMT1-208ENST00000582352 C9orf85Q96MD7 179 aa9.09□□□□□ -0.95
SHMT1-208ENST00000582352 IGHV3-16A0A0C4DH30 117 aa9.09□□□□□ -0.95
SHMT1-208ENST00000582352 IGLV1-40P01703 118 aa9.09□□□□□ -0.95
SHMT1-208ENST00000582352 CRYBA4P53673 196 aa9.09□□□□□ -0.95
SHMT1-208ENST00000582352 PIMREGQ9BSJ6 248 aa9.09□□□□□ -0.95
SHMT1-208ENST00000582352 K7EMT4 169 aa9.08□□□□□ -0.96
SHMT1-208ENST00000582352 IGKV3-20P01619 116 aa9.08□□□□□ -0.96
SHMT1-208ENST00000582352 ZNF688P0C7X2 276 aa9.08□□□□□ -0.96
SHMT1-208ENST00000582352 Q6ZUT4 128 aa9.08□□□□□ -0.96
SHMT1-208ENST00000582352 TRPT1Q86TN4 253 aaKnown RBP9.08□□□□□ -0.96
SHMT1-208ENST00000582352 TRAV12-2A0A075B6T6 113 aa9.08□□□□□ -0.96
SHMT1-208ENST00000582352 IGHV4-61A0A0C4DH41 118 aa9.08□□□□□ -0.96
SHMT1-208ENST00000582352 A4D1N5 150 aa9.08□□□□□ -0.96
SHMT1-208ENST00000582352 M0QY20 66 aa9.08□□□□□ -0.96
SHMT1-208ENST00000582352 LEPROTO15243 131 aa9.08□□□□□ -0.96
SHMT1-208ENST00000582352 MT-ATP8P03928 68 aa9.08□□□□□ -0.96
SHMT1-208ENST00000582352 ANKRD29Q8N6D5 301 aa9.08□□□□□ -0.96
SHMT1-208ENST00000582352 CARD19Q96LW7 228 aa9.08□□□□□ -0.96
SHMT1-208ENST00000582352 OPRPNQ99935 248 aaPredicted RBP9.08□□□□□ -0.96
SHMT1-208ENST00000582352 MDFICQ9P1T7 246 aa9.08□□□□□ -0.96
SHMT1-208ENST00000582352 TMEM223A0PJW6 202 aa9.07□□□□□ -0.96
SHMT1-208ENST00000582352 XGP55808 180 aa9.07□□□□□ -0.96
SHMT1-208ENST00000582352 SBSPONQ8IVN8 264 aa9.07□□□□□ -0.96
SHMT1-208ENST00000582352 RAX2Q96IS3 184 aa9.07□□□□□ -0.96
SHMT1-208ENST00000582352 ODF3Q96PU9 254 aa9.07□□□□□ -0.96
SHMT1-208ENST00000582352 IGHV3-64A0A075B6Q5 118 aa9.07□□□□□ -0.96
SHMT1-208ENST00000582352 TRAV2A0A0B4J234 112 aa9.07□□□□□ -0.96
SHMT1-208ENST00000582352 SNRPD3P62318 126 aaKnown RBP9.07□□□□□ -0.96
SHMT1-208ENST00000582352 Q8N1Y9 231 aa9.07□□□□□ -0.96
SHMT1-208ENST00000582352 H7C2G1 150 aa9.06□□□□□ -0.96
SHMT1-208ENST00000582352 GEMIN7Q9H840 131 aaKnown RBP9.06□□□□□ -0.96
SHMT1-208ENST00000582352 RHODO00212 210 aa9.06□□□□□ -0.96
SHMT1-208ENST00000582352 ZNF22P17026 224 aaPredicted RBP9.06□□□□□ -0.96
SHMT1-208ENST00000582352 C20orf203Q8NBC4 194 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms