RNA–Protein interactions for RNA: ENST00000580540.1

SREBF1-219, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 4

Gene SREBF1, Length 540 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-219ENST00000580540 MUC21A0A0G2JKD1 596 aa11.28□□□□□ -0.6
SREBF1-219ENST00000580540 MUC21A0A140T8X8 626 aa11.28□□□□□ -0.6
SREBF1-219ENST00000580540 RAB19A4D1S5 217 aa11.28□□□□□ -0.6
SREBF1-219ENST00000580540 SSTP61278 116 aa11.28□□□□□ -0.6
SREBF1-219ENST00000580540 MEF2BQ02080 365 aaPredicted RBP11.28□□□□□ -0.6
SREBF1-219ENST00000580540 CENPWQ5EE01 88 aa11.28□□□□□ -0.6
SREBF1-219ENST00000580540 UFSP1Q6NVU6 142 aa11.28□□□□□ -0.6
SREBF1-219ENST00000580540 NFE4Q86UQ8 179 aa11.28□□□□□ -0.6
SREBF1-219ENST00000580540 MED9Q9NWA0 146 aa11.28□□□□□ -0.6
SREBF1-219ENST00000580540 MSRB1Q9NZV6 116 aa11.28□□□□□ -0.6
SREBF1-219ENST00000580540 Q9UF83 564 aa11.28□□□□□ -0.6
SREBF1-219ENST00000580540 LELP1Q5T871 98 aa11.27□□□□□ -0.61
SREBF1-219ENST00000580540 Q6ZRN7 208 aaPredicted RBP11.27□□□□□ -0.61
SREBF1-219ENST00000580540 DAZAP1Q96EP5 407 aaKnown RBP11.27□□□□□ -0.61
SREBF1-219ENST00000580540 K7EP13 123 aa11.26□□□□□ -0.61
SREBF1-219ENST00000580540 PDE6DO43924 150 aa11.26□□□□□ -0.61
SREBF1-219ENST00000580540 IGHV3-30P01768 117 aa11.26□□□□□ -0.61
SREBF1-219ENST00000580540 IGHV3-33P01772 117 aa11.26□□□□□ -0.61
SREBF1-219ENST00000580540 IGHV3-30-3P0DP02 117 aa11.26□□□□□ -0.61
SREBF1-219ENST00000580540 IGHV3-30-5P0DP03 117 aa11.26□□□□□ -0.61
SREBF1-219ENST00000580540 BCL2P10415 239 aa11.26□□□□□ -0.61
SREBF1-219ENST00000580540 GNG4P50150 75 aa11.26□□□□□ -0.61
SREBF1-219ENST00000580540 C10orf126Q8N4M7 172 aa11.26□□□□□ -0.61
SREBF1-219ENST00000580540 OR10AG1Q8NH19 301 aa11.26□□□□□ -0.61
SREBF1-219ENST00000580540 EREGO14944 169 aa11.25□□□□□ -0.61
SREBF1-219ENST00000580540 SPANXN1Q5VSR9 72 aa11.25□□□□□ -0.61
SREBF1-219ENST00000580540 ALKAL2Q6UX46 152 aa11.25□□□□□ -0.61
SREBF1-219ENST00000580540 VAX2Q9UIW0 290 aa11.25□□□□□ -0.61
SREBF1-219ENST00000580540 CXCL1P09341 107 aa11.24□□□□□ -0.61
SREBF1-219ENST00000580540 KRTAP10-2P60368 255 aa11.24□□□□□ -0.61
SREBF1-219ENST00000580540 LINC01556Q5JQF7 62 aa11.24□□□□□ -0.61
SREBF1-219ENST00000580540 TPPP3Q9BW30 176 aa11.24□□□□□ -0.61
SREBF1-219ENST00000580540 A0A1B0GVG6 124 aa11.23□□□□□ -0.61
SREBF1-219ENST00000580540 IGLV2-8P01709 118 aa11.23□□□□□ -0.61
SREBF1-219ENST00000580540 GZMBP10144 247 aa11.23□□□□□ -0.61
SREBF1-219ENST00000580540 NKX2-5P52952 324 aaPredicted RBP11.23□□□□□ -0.61
SREBF1-219ENST00000580540 ERVFC1-1P60608 527 aa11.23□□□□□ -0.61
SREBF1-219ENST00000580540 OR2D3Q8NGH3 330 aa11.23□□□□□ -0.61
SREBF1-219ENST00000580540 BOLA1Q9Y3E2 137 aa11.23□□□□□ -0.61
SREBF1-219ENST00000580540 SNAI2O43623 268 aa11.22□□□□□ -0.61
SREBF1-219ENST00000580540 LINC00694P0DN24 101 aa11.22□□□□□ -0.61
SREBF1-219ENST00000580540 BLOC1S1P78537 153 aa11.22□□□□□ -0.61
SREBF1-219ENST00000580540 ZNF56Q15929 161 aa11.22□□□□□ -0.61
SREBF1-219ENST00000580540 SSBP4Q9BWG4 385 aaPredicted RBP11.22□□□□□ -0.61
SREBF1-219ENST00000580540 Q9HAA7 133 aa11.22□□□□□ -0.61
SREBF1-219ENST00000580540 LRP1BQ9NZR2 4599 aa11.22□□□□□ -0.61
SREBF1-219ENST00000580540 F5H697 171 aa11.21□□□□□ -0.61
SREBF1-219ENST00000580540 OR5AL1P0C617 328 aa11.21□□□□□ -0.61
SREBF1-219ENST00000580540 FUSP35637 526 aaKnown RBP eCLIP11.21□□□□□ -0.61
SREBF1-219ENST00000580540 TAGLN2P37802 199 aaKnown RBP11.21□□□□□ -0.61
SREBF1-219ENST00000580540 RBFOX3A6NFN3 312 aa11.2□□□□□ -0.62
SREBF1-219ENST00000580540 IBA57-AS1B1ANH7 110 aa11.2□□□□□ -0.62
SREBF1-219ENST00000580540 PSCAO43653 123 aa11.2□□□□□ -0.62
SREBF1-219ENST00000580540 P01737 135 aa11.2□□□□□ -0.62
SREBF1-219ENST00000580540 SMIM17P0DL12 118 aa11.2□□□□□ -0.62
SREBF1-219ENST00000580540 RPS20P60866 119 aaKnown RBP11.2□□□□□ -0.62
SREBF1-219ENST00000580540 RAB4BP61018 213 aa11.2□□□□□ -0.62
SREBF1-219ENST00000580540 RPL36AP83881 106 aaKnown RBP11.2□□□□□ -0.62
SREBF1-219ENST00000580540 Q8N3U1 123 aa11.2□□□□□ -0.62
SREBF1-219ENST00000580540 RPL36ALQ969Q0 106 aaKnown RBP11.2□□□□□ -0.62
SREBF1-219ENST00000580540 RYR1P21817 5038 aa11.19□□□□□ -0.62
SREBF1-219ENST00000580540 TRBV20OR9-2A0A075B6H5 130 aa11.19□□□□□ -0.62
SREBF1-219ENST00000580540 A0A087WTM6 91 aa11.19□□□□□ -0.62
SREBF1-219ENST00000580540 A0A087WWC5 75 aa11.19□□□□□ -0.62
SREBF1-219ENST00000580540 TRBV10-1A0A0K0K1A3 114 aa11.19□□□□□ -0.62
SREBF1-219ENST00000580540 FER1L6-AS1Q8NA97 138 aa11.19□□□□□ -0.62
SREBF1-219ENST00000580540 SMIM12Q96EX1 92 aa11.19□□□□□ -0.62
SREBF1-219ENST00000580540 BIN3Q9NQY0 253 aa11.19□□□□□ -0.62
SREBF1-219ENST00000580540 C19orf71A6NCJ1 209 aa11.18□□□□□ -0.62
SREBF1-219ENST00000580540 DNAH5Q8TE73 4624 aa11.18□□□□□ -0.62
SREBF1-219ENST00000580540 TRBV7-3A0A075B6L6 115 aa11.17□□□□□ -0.62
SREBF1-219ENST00000580540 XKRY2A2RUG3 117 aa11.17□□□□□ -0.62
SREBF1-219ENST00000580540 CEBPGP53567 150 aa11.17□□□□□ -0.62
SREBF1-219ENST00000580540 AP1S3Q96PC3 154 aa11.17□□□□□ -0.62
SREBF1-219ENST00000580540 PGPEP1Q9NXJ5 209 aa11.17□□□□□ -0.62
SREBF1-219ENST00000580540 URGCP-MRPS24S4R325 110 aa11.17□□□□□ -0.62
SREBF1-219ENST00000580540 MGPP08493 103 aa11.16□□□□□ -0.62
SREBF1-219ENST00000580540 IGLC6P0CF74 106 aa11.16□□□□□ -0.62
SREBF1-219ENST00000580540 UBE2D3P61077 147 aa11.16□□□□□ -0.62
SREBF1-219ENST00000580540 UBE2D2P62837 147 aa11.16□□□□□ -0.62
SREBF1-219ENST00000580540 DAZ4Q86SG3 579 aaKnown RBP11.16□□□□□ -0.62
SREBF1-219ENST00000580540 NEXN-AS1Q8NBZ9 246 aa11.16□□□□□ -0.62
SREBF1-219ENST00000580540 NUDT10Q8NFP7 164 aa11.16□□□□□ -0.62
SREBF1-219ENST00000580540 NUDT11Q96G61 164 aa11.16□□□□□ -0.62
SREBF1-219ENST00000580540 DAZ3Q9NR90 486 aaKnown RBP11.16□□□□□ -0.62
SREBF1-219ENST00000580540 CACNG7P62955 275 aa11.15□□□□□ -0.62
SREBF1-219ENST00000580540 OCC1Q8TAD7 63 aa11.15□□□□□ -0.62
SREBF1-219ENST00000580540 TOR2AQ5JU69 321 aa11.14□□□□□ -0.63
SREBF1-219ENST00000580540 KCNIP4Q6PIL6 250 aa11.14□□□□□ -0.63
SREBF1-219ENST00000580540 LYZL1Q6UWQ5 148 aa11.14□□□□□ -0.63
SREBF1-219ENST00000580540 OR10G8Q8NGN5 311 aa11.14□□□□□ -0.63
SREBF1-219ENST00000580540 RNASE7Q9H1E1 156 aaKnown RBP11.14□□□□□ -0.63
SREBF1-219ENST00000580540 TMEM262E9PQX1 116 aa11.13□□□□□ -0.63
SREBF1-219ENST00000580540 F2Z2F3 143 aa11.13□□□□□ -0.63
SREBF1-219ENST00000580540 CDK2AP2O75956 126 aa11.13□□□□□ -0.63
SREBF1-219ENST00000580540 LAGE3Q14657 143 aa11.13□□□□□ -0.63
SREBF1-219ENST00000580540 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.13□□□□□ -0.63
SREBF1-219ENST00000580540 EIF5A2Q9GZV4 153 aaKnown RBP11.13□□□□□ -0.63
SREBF1-219ENST00000580540 KIF25-AS1Q9Y6Z4 181 aa11.13□□□□□ -0.63
SREBF1-219ENST00000580540 HSPG2P98160 4391 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms