RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 HLA-DRB4P13762 266 aa7.5□□□□□ -1.21
VPS53-220ENST00000576149 SCGB3A1Q96QR1 104 aa7.5□□□□□ -1.21
VPS53-220ENST00000576149 HIGD1BQ9P298 99 aa7.5□□□□□ -1.21
VPS53-220ENST00000576149 HLA-DRB4X5D2U9 266 aa7.5□□□□□ -1.21
VPS53-220ENST00000576149 USP24Q9UPU5 2620 aa7.5□□□□□ -1.21
VPS53-220ENST00000576149 SCGB1A1P11684 91 aa7.5□□□□□ -1.21
VPS53-220ENST00000576149 PLNP26678 52 aa7.5□□□□□ -1.21
VPS53-220ENST00000576149 JPT2Q9H910 190 aa7.5□□□□□ -1.21
VPS53-220ENST00000576149 ZNF462Q96JM2 2506 aa7.49□□□□□ -1.21
VPS53-220ENST00000576149 MUC4Q99102 2169 aa7.49□□□□□ -1.21
VPS53-220ENST00000576149 IGHV3-16A0A0C4DH30 117 aa7.49□□□□□ -1.21
VPS53-220ENST00000576149 A6NDN8 102 aa7.49□□□□□ -1.21
VPS53-220ENST00000576149 H7C1H1 209 aa7.49□□□□□ -1.21
VPS53-220ENST00000576149 IGKV3-20P01619 116 aa7.49□□□□□ -1.21
VPS53-220ENST00000576149 RPL32P62910 135 aaKnown RBP7.49□□□□□ -1.21
VPS53-220ENST00000576149 C2orf66Q6UXQ4 117 aa7.49□□□□□ -1.21
VPS53-220ENST00000576149 PTH2Q96A98 100 aa7.49□□□□□ -1.21
VPS53-220ENST00000576149 C9orf85Q96MD7 179 aa7.49□□□□□ -1.21
VPS53-220ENST00000576149 TTTY13Q9BZ97 58 aa7.49□□□□□ -1.21
VPS53-220ENST00000576149 ANKRD17O75179 2603 aaKnown RBP7.49□□□□□ -1.21
VPS53-220ENST00000576149 USP9YO00507 2555 aaPredicted RBP7.49□□□□□ -1.21
VPS53-220ENST00000576149 TRAV12-2A0A075B6T6 113 aa7.49□□□□□ -1.21
VPS53-220ENST00000576149 F8VRH5 84 aa7.49□□□□□ -1.21
VPS53-220ENST00000576149 H3BRM9 83 aa7.49□□□□□ -1.21
VPS53-220ENST00000576149 AMMECR1LQ6DCA0 310 aa7.49□□□□□ -1.21
VPS53-220ENST00000576149 Q8N2B8 174 aa7.49□□□□□ -1.21
VPS53-220ENST00000576149 NEXN-AS1Q8NBZ9 246 aa7.49□□□□□ -1.21
VPS53-220ENST00000576149 OR4C5Q8NGB2 326 aa7.49□□□□□ -1.21
VPS53-220ENST00000576149 CSDC2Q9Y534 153 aaKnown RBP7.49□□□□□ -1.21
VPS53-220ENST00000576149 CR1P17927 2039 aa7.48□□□□□ -1.21
VPS53-220ENST00000576149 TRAV8-6A0A0B4J262 113 aa7.48□□□□□ -1.21
VPS53-220ENST00000576149 RS1O15537 224 aa7.48□□□□□ -1.21
VPS53-220ENST00000576149 DUSP14O95147 198 aaKnown RBP7.48□□□□□ -1.21
VPS53-220ENST00000576149 SUMO4Q6EEV6 95 aa7.48□□□□□ -1.21
VPS53-220ENST00000576149 POLR2KP53803 58 aaKnown RBP7.48□□□□□ -1.21
VPS53-220ENST00000576149 SPINK13Q1W4C9 94 aa7.48□□□□□ -1.21
VPS53-220ENST00000576149 KHDC1LQ5JSQ8 128 aa7.48□□□□□ -1.21
VPS53-220ENST00000576149 FOXI2Q6ZQN5 318 aa7.48□□□□□ -1.21
VPS53-220ENST00000576149 Q96MF0 132 aa7.48□□□□□ -1.21
VPS53-220ENST00000576149 MDFICQ9P1T7 246 aa7.48□□□□□ -1.21
VPS53-220ENST00000576149 FAM208BQ5VWN6 2430 aa7.47□□□□□ -1.21
VPS53-220ENST00000576149 TRBV25-1A0A075B6N4 114 aa7.47□□□□□ -1.21
VPS53-220ENST00000576149 IGHV1OR15-1A0A075B7D0 117 aa7.47□□□□□ -1.21
VPS53-220ENST00000576149 A0A087WWL8 130 aa7.47□□□□□ -1.21
VPS53-220ENST00000576149 TCTEX1D4Q5JR98 221 aa7.47□□□□□ -1.21
VPS53-220ENST00000576149 AMTNQ6UX39 209 aa7.47□□□□□ -1.21
VPS53-220ENST00000576149 Q8N1Y9 231 aa7.47□□□□□ -1.21
VPS53-220ENST00000576149 BAALCQ8WXS3 180 aa7.47□□□□□ -1.21
VPS53-220ENST00000576149 UBR5O95071 2799 aaPredicted RBP7.47□□□□□ -1.21
VPS53-220ENST00000576149 POLQO75417 2590 aa7.47□□□□□ -1.21
VPS53-220ENST00000576149 C9orf118A6NHY6 69 aa7.47□□□□□ -1.21
VPS53-220ENST00000576149 C18orf65Q6ZTR6 163 aa7.47□□□□□ -1.21
VPS53-220ENST00000576149 NEGR1Q7Z3B1 354 aa7.47□□□□□ -1.21
VPS53-220ENST00000576149 CHAC1Q9BUX1 264 aa7.47□□□□□ -1.21
VPS53-220ENST00000576149 ZFYVE26Q68DK2 2539 aa7.46□□□□□ -1.21
VPS53-220ENST00000576149 PRRC2AP48634 2157 aaKnown RBP7.46□□□□□ -1.21
VPS53-220ENST00000576149 F5H697 171 aa7.46□□□□□ -1.22
VPS53-220ENST00000576149 VCYO14598 125 aa7.46□□□□□ -1.22
VPS53-220ENST00000576149 SLURP1P55000 103 aa7.46□□□□□ -1.22
VPS53-220ENST00000576149 KRTAP1-3Q8IUG1 177 aa7.46□□□□□ -1.22
VPS53-220ENST00000576149 MAPKAPK5-AS1Q8N8E1 139 aa7.46□□□□□ -1.22
VPS53-220ENST00000576149 SYT8Q8NBV8 401 aa7.46□□□□□ -1.22
VPS53-220ENST00000576149 SS18L2Q9UHA2 77 aa7.46□□□□□ -1.22
VPS53-220ENST00000576149 DEFB136Q30KP8 78 aa7.46□□□□□ -1.22
VPS53-220ENST00000576149 SMIM20Q8N5G0 67 aa7.46□□□□□ -1.22
VPS53-220ENST00000576149 TRBV6-5A0A0K0K1A5 114 aa7.45□□□□□ -1.22
VPS53-220ENST00000576149 PRSS29PA6NIE9 313 aa7.45□□□□□ -1.22
VPS53-220ENST00000576149 LINC01549A6NIU2 74 aa7.45□□□□□ -1.22
VPS53-220ENST00000576149 OR11H12B2RN74 326 aa7.45□□□□□ -1.22
VPS53-220ENST00000576149 CRYGDP07320 174 aa7.45□□□□□ -1.22
VPS53-220ENST00000576149 ZFP2Q6ZN57 461 aa7.45□□□□□ -1.22
VPS53-220ENST00000576149 OR11H1Q8NG94 326 aa7.45□□□□□ -1.22
VPS53-220ENST00000576149 OR11H2Q8NH07 326 aa7.45□□□□□ -1.22
VPS53-220ENST00000576149 CYSLTR1Q9Y271 337 aa7.45□□□□□ -1.22
VPS53-220ENST00000576149 ZANQ9Y493 2812 aa7.45□□□□□ -1.22
VPS53-220ENST00000576149 LRRK2Q5S007 2527 aa7.45□□□□□ -1.22
VPS53-220ENST00000576149 TRBV27A0A0K0K1C4 114 aa7.44□□□□□ -1.22
VPS53-220ENST00000576149 SDHAF1A6NFY7 115 aa7.44□□□□□ -1.22
VPS53-220ENST00000576149 LINC01619G3V211 115 aa7.44□□□□□ -1.22
VPS53-220ENST00000576149 GCSHP23434 173 aa7.44□□□□□ -1.22
VPS53-220ENST00000576149 FAM74A4Q5TZK3 123 aa7.44□□□□□ -1.22
VPS53-220ENST00000576149 RAX2Q96IS3 184 aa7.44□□□□□ -1.22
VPS53-220ENST00000576149 KIR2DL4Q99706 377 aa7.44□□□□□ -1.22
VPS53-220ENST00000576149 IGIPA6NJ69 53 aa7.44□□□□□ -1.22
VPS53-220ENST00000576149 TSHBP01222 138 aa7.44□□□□□ -1.22
VPS53-220ENST00000576149 FXYD2P54710 66 aa7.44□□□□□ -1.22
VPS53-220ENST00000576149 TM2D2Q9BX73 214 aa7.44□□□□□ -1.22
VPS53-220ENST00000576149 TP53TG1Q9Y2A0 90 aa7.44□□□□□ -1.22
VPS53-220ENST00000576149 PTPN13Q12923 2485 aa7.44□□□□□ -1.22
VPS53-220ENST00000576149 H3BUT2 72 aa7.43□□□□□ -1.22
VPS53-220ENST00000576149 M0QY20 66 aa7.43□□□□□ -1.22
VPS53-220ENST00000576149 C4orf3Q8WVX3 66 aa7.43□□□□□ -1.22
VPS53-220ENST00000576149 JMJD8Q96S16 334 aa7.43□□□□□ -1.22
VPS53-220ENST00000576149 DOPEY2Q9Y3R5 2298 aa7.43□□□□□ -1.22
VPS53-220ENST00000576149 TRGV11A0A075B6L2 103 aa7.43□□□□□ -1.22
VPS53-220ENST00000576149 TRAV2A0A0B4J234 112 aa7.43□□□□□ -1.22
VPS53-220ENST00000576149 KNCNA6PVL3 124 aa7.43□□□□□ -1.22
VPS53-220ENST00000576149 A8MTW9 85 aa7.43□□□□□ -1.22
VPS53-220ENST00000576149 SMIM13P0DJ93 91 aa7.43□□□□□ -1.22
VPS53-220ENST00000576149 RBMY1A1P0DJD3 496 aaKnown RBP7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms