RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 TRGV4A0A0C4DH28 118 aa12.73□□□□□ -0.37
CCDC40-213ENST00000574933 CRYBA4P53673 196 aa12.73□□□□□ -0.37
CCDC40-213ENST00000574933 TMEM88Q6PEY1 159 aa12.73□□□□□ -0.37
CCDC40-213ENST00000574933 SLC7A5P1Q8MH63 180 aa12.73□□□□□ -0.37
CCDC40-213ENST00000574933 NUP35Q8NFH5 326 aa12.73□□□□□ -0.37
CCDC40-213ENST00000574933 VSIG2Q96IQ7 327 aa12.73□□□□□ -0.37
CCDC40-213ENST00000574933 AP1S3Q96PC3 154 aa12.73□□□□□ -0.37
CCDC40-213ENST00000574933 MSRB1Q9NZV6 116 aa12.73□□□□□ -0.37
CCDC40-213ENST00000574933 KIF25-AS1Q9Y6Z4 181 aa12.73□□□□□ -0.37
CCDC40-213ENST00000574933 STARD9Q9P2P6 4700 aa12.73□□□□□ -0.37
CCDC40-213ENST00000574933 A0A1B0GUT8 65 aa12.72□□□□□ -0.37
CCDC40-213ENST00000574933 IGLL5B9A064 214 aa12.72□□□□□ -0.37
CCDC40-213ENST00000574933 CTDSP1Q9GZU7 261 aa12.72□□□□□ -0.37
CCDC40-213ENST00000574933 APLNQ9ULZ1 77 aa12.72□□□□□ -0.37
CCDC40-213ENST00000574933 HHLA3Q9XRX5 114 aa12.72□□□□□ -0.37
CCDC40-213ENST00000574933 TRAV26-1A0A087WT03 109 aa12.71□□□□□ -0.37
CCDC40-213ENST00000574933 TRBV6-4A0A1B0GX49 114 aa12.71□□□□□ -0.37
CCDC40-213ENST00000574933 TRGC1P0CF51 173 aa12.71□□□□□ -0.37
CCDC40-213ENST00000574933 LINC00315P59091 139 aa12.71□□□□□ -0.37
CCDC40-213ENST00000574933 C15orf53Q8NAA6 179 aa12.71□□□□□ -0.37
CCDC40-213ENST00000574933 CLRN3Q8NCR9 226 aa12.71□□□□□ -0.37
CCDC40-213ENST00000574933 A0A087WWC5 75 aa12.7□□□□□ -0.38
CCDC40-213ENST00000574933 A0A087WWL8 130 aa12.7□□□□□ -0.38
CCDC40-213ENST00000574933 RHEBQ15382 184 aa12.7□□□□□ -0.38
CCDC40-213ENST00000574933 BORCS7Q96B45 105 aa12.7□□□□□ -0.38
CCDC40-213ENST00000574933 TMEM242Q9NWH2 141 aa12.7□□□□□ -0.38
CCDC40-213ENST00000574933 C7orf77A4D0Y5 90 aa12.69□□□□□ -0.38
CCDC40-213ENST00000574933 PAX4O43316 350 aa12.69□□□□□ -0.38
CCDC40-213ENST00000574933 SSTP61278 116 aa12.69□□□□□ -0.38
CCDC40-213ENST00000574933 TWIST1Q15672 202 aa12.69□□□□□ -0.38
CCDC40-213ENST00000574933 C14orf178Q8N769 122 aaPredicted RBP12.69□□□□□ -0.38
CCDC40-213ENST00000574933 IMMP2LQ96T52 175 aa12.69□□□□□ -0.38
CCDC40-213ENST00000574933 IGHV3-73A0A0B4J1V6 119 aa12.68□□□□□ -0.38
CCDC40-213ENST00000574933 APOC3P02656 99 aa12.68□□□□□ -0.38
CCDC40-213ENST00000574933 EVI2AP22794 236 aa12.68□□□□□ -0.38
CCDC40-213ENST00000574933 RAB4BP61018 213 aa12.68□□□□□ -0.38
CCDC40-213ENST00000574933 RIGQ13278 110 aa12.68□□□□□ -0.38
CCDC40-213ENST00000574933 FAM74A4Q5TZK3 123 aa12.68□□□□□ -0.38
CCDC40-213ENST00000574933 Q6ZSN1 163 aa12.68□□□□□ -0.38
CCDC40-213ENST00000574933 SVBPQ8N300 66 aa12.68□□□□□ -0.38
CCDC40-213ENST00000574933 SLC25A29Q8N8R3 303 aa12.68□□□□□ -0.38
CCDC40-213ENST00000574933 DPH3P1Q9H4G8 78 aa12.68□□□□□ -0.38
CCDC40-213ENST00000574933 A0A0J9YY99 117 aa12.67□□□□□ -0.38
CCDC40-213ENST00000574933 SMIM17P0DL12 118 aa12.67□□□□□ -0.38
CCDC40-213ENST00000574933 A0A1B0GW15 77 aa12.66□□□□□ -0.38
CCDC40-213ENST00000574933 SNAPINO95295 136 aa12.66□□□□□ -0.38
CCDC40-213ENST00000574933 RHOHQ15669 191 aa12.66□□□□□ -0.38
CCDC40-213ENST00000574933 A0A1B0GXF2 115 aa12.65□□□□□ -0.38
CCDC40-213ENST00000574933 K7EQD1 137 aa12.65□□□□□ -0.38
CCDC40-213ENST00000574933 ATP5L2Q7Z4Y8 100 aa12.65□□□□□ -0.38
CCDC40-213ENST00000574933 PRADC1Q9BSG0 188 aa12.65□□□□□ -0.38
CCDC40-213ENST00000574933 TMEM191AQ9H0A3 160 aa12.65□□□□□ -0.38
CCDC40-213ENST00000574933 A0A096LPF7 62 aa12.64□□□□□ -0.39
CCDC40-213ENST00000574933 TRBV10-1A0A0K0K1A3 114 aa12.64□□□□□ -0.39
CCDC40-213ENST00000574933 FAM3BP58499 235 aaPredicted RBP12.64□□□□□ -0.39
CCDC40-213ENST00000574933 MRPL23Q16540 153 aaKnown RBP12.64□□□□□ -0.39
CCDC40-213ENST00000574933 SMIM15Q7Z3B0 74 aa12.64□□□□□ -0.39
CCDC40-213ENST00000574933 ICOSQ9Y6W8 199 aa12.64□□□□□ -0.39
CCDC40-213ENST00000574933 TRAV9-1A0A075B6T8 112 aa12.63□□□□□ -0.39
CCDC40-213ENST00000574933 LINC00694P0DN24 101 aa12.63□□□□□ -0.39
CCDC40-213ENST00000574933 GYPEP15421 78 aa12.63□□□□□ -0.39
CCDC40-213ENST00000574933 ZNF56Q15929 161 aa12.63□□□□□ -0.39
CCDC40-213ENST00000574933 GATD1Q8NB37 220 aa12.63□□□□□ -0.39
CCDC40-213ENST00000574933 FRZBQ92765 325 aa12.63□□□□□ -0.39
CCDC40-213ENST00000574933 RPS10P5Q9NQ39 176 aa12.63□□□□□ -0.39
CCDC40-213ENST00000574933 NUDT3O95989 172 aa12.62□□□□□ -0.39
CCDC40-213ENST00000574933 S100A8P05109 93 aa12.62□□□□□ -0.39
CCDC40-213ENST00000574933 PLECQ15149 4684 aaKnown RBP12.62□□□□□ -0.39
CCDC40-213ENST00000574933 LOC100131303A0A0U1RQF7 123 aa12.61□□□□□ -0.39
CCDC40-213ENST00000574933 F5H697 171 aa12.61□□□□□ -0.39
CCDC40-213ENST00000574933 HBBP68871 147 aa12.61□□□□□ -0.39
CCDC40-213ENST00000574933 KCNIP4Q6PIL6 250 aa12.61□□□□□ -0.39
CCDC40-213ENST00000574933 SH2D6Q7Z4S9 175 aa12.61□□□□□ -0.39
CCDC40-213ENST00000574933 BTF3L4Q96K17 158 aa12.61□□□□□ -0.39
CCDC40-213ENST00000574933 M0QY20 66 aa12.6□□□□□ -0.39
CCDC40-213ENST00000574933 MGPP08493 103 aa12.6□□□□□ -0.39
CCDC40-213ENST00000574933 SUMO4Q6EEV6 95 aa12.6□□□□□ -0.39
CCDC40-213ENST00000574933 MRPL54Q6P161 138 aaKnown RBP12.6□□□□□ -0.39
CCDC40-213ENST00000574933 Q9UF83 564 aa12.6□□□□□ -0.39
CCDC40-213ENST00000574933 H7C1H1 209 aa12.59□□□□□ -0.39
CCDC40-213ENST00000574933 SRIP30626 198 aa12.59□□□□□ -0.39
CCDC40-213ENST00000574933 LGALS9CQ6DKI2 356 aa12.59□□□□□ -0.39
CCDC40-213ENST00000574933 NEGR1Q7Z3B1 354 aa12.59□□□□□ -0.39
CCDC40-213ENST00000574933 RNF185Q96GF1 192 aa12.59□□□□□ -0.39
CCDC40-213ENST00000574933 P0DMU3 169 aa12.58□□□□□ -0.4
CCDC40-213ENST00000574933 FAM231AP0DMU4 169 aa12.58□□□□□ -0.4
CCDC40-213ENST00000574933 FAM231CP0DMU5 169 aa12.58□□□□□ -0.4
CCDC40-213ENST00000574933 RAB4AP20338 218 aa12.58□□□□□ -0.4
CCDC40-213ENST00000574933 S100PP25815 95 aa12.58□□□□□ -0.4
CCDC40-213ENST00000574933 CAMPP49913 170 aa12.58□□□□□ -0.4
CCDC40-213ENST00000574933 RASL11AQ6T310 242 aa12.58□□□□□ -0.4
CCDC40-213ENST00000574933 NEXN-AS1Q8NBZ9 246 aa12.58□□□□□ -0.4
CCDC40-213ENST00000574933 TRBV7-3A0A075B6L6 115 aa12.57□□□□□ -0.4
CCDC40-213ENST00000574933 TIRAPP58753 221 aa12.57□□□□□ -0.4
CCDC40-213ENST00000574933 RPL36AP83881 106 aaKnown RBP12.57□□□□□ -0.4
CCDC40-213ENST00000574933 FAM104BQ5XKR9 115 aa12.57□□□□□ -0.4
CCDC40-213ENST00000574933 ATRAIDQ6UW56 229 aa12.57□□□□□ -0.4
CCDC40-213ENST00000574933 RPL36ALQ969Q0 106 aaKnown RBP12.57□□□□□ -0.4
CCDC40-213ENST00000574933 DNAJC30Q96LL9 226 aa12.57□□□□□ -0.4
CCDC40-213ENST00000574933 UBE2D3P61077 147 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms