RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, human

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CIITA-208	ENST00000572665	IGLV2-11	P01706	119 aa		6.24	□□□□□ -1.41
CIITA-208	ENST00000572665	INAFM2	P0DMQ5	153 aa		6.24	□□□□□ -1.41
CIITA-208	ENST00000572665		Q6ZQT7	251 aa		6.24	□□□□□ -1.41
CIITA-208	ENST00000572665	GOLT1A	Q6ZVE7	132 aa		6.24	□□□□□ -1.41
CIITA-208	ENST00000572665	TCTE3	Q8IZS6	198 aa		6.24	□□□□□ -1.41
CIITA-208	ENST00000572665	INO80E	Q8NBZ0	244 aa	Predicted RBP	6.24	□□□□□ -1.41
CIITA-208	ENST00000572665	SMIM3	Q9BZL3	60 aa		6.24	□□□□□ -1.41
CIITA-208	ENST00000572665	TRAV34	A0A0B4J273	112 aa		6.23	□□□□□ -1.41
CIITA-208	ENST00000572665	IGHV3-16	A0A0C4DH30	117 aa		6.23	□□□□□ -1.41
CIITA-208	ENST00000572665	HMSD	A8MTL9	139 aa		6.23	□□□□□ -1.41
CIITA-208	ENST00000572665	KRTAP29-1	A8MX34	341 aa	Predicted RBP	6.23	□□□□□ -1.41
CIITA-208	ENST00000572665	SMLR1	H3BR10	107 aa		6.23	□□□□□ -1.41
CIITA-208	ENST00000572665	TAAR5	O14804	337 aa		6.23	□□□□□ -1.41
CIITA-208	ENST00000572665	ZNF345	Q14585	488 aa		6.23	□□□□□ -1.41
CIITA-208	ENST00000572665	RHOH	Q15669	191 aa		6.23	□□□□□ -1.41
CIITA-208	ENST00000572665	LINC01556	Q5JQF7	62 aa		6.23	□□□□□ -1.41
CIITA-208	ENST00000572665	OR10J3	Q5JRS4	329 aa		6.23	□□□□□ -1.41
CIITA-208	ENST00000572665	PET117	Q6UWS5	81 aa		6.23	□□□□□ -1.41
CIITA-208	ENST00000572665	KRTAP9-8	Q9BYQ0	159 aa		6.23	□□□□□ -1.41
CIITA-208	ENST00000572665		A0A1B0GVG6	124 aa		6.22	□□□□□ -1.41
CIITA-208	ENST00000572665	TRBV6-4	A0A1B0GX49	114 aa		6.22	□□□□□ -1.41
CIITA-208	ENST00000572665	ARPC5	O15511	151 aa		6.22	□□□□□ -1.41
CIITA-208	ENST00000572665	GNRH2	O43555	120 aa		6.22	□□□□□ -1.41
CIITA-208	ENST00000572665	MB	P02144	154 aa		6.22	□□□□□ -1.41
CIITA-208	ENST00000572665	TYMS	P04818	313 aa		6.22	□□□□□ -1.41
CIITA-208	ENST00000572665	MGST1	P10620	155 aa	Known RBP	6.22	□□□□□ -1.41
CIITA-208	ENST00000572665	GATA1	P15976	413 aa	Predicted RBP	6.22	□□□□□ -1.41
CIITA-208	ENST00000572665	ZNF876P	Q49A33	203 aa		6.22	□□□□□ -1.41
CIITA-208	ENST00000572665		Q5VSD8	79 aa		6.22	□□□□□ -1.41
CIITA-208	ENST00000572665	STPG4	Q8N801	248 aa		6.22	□□□□□ -1.41
CIITA-208	ENST00000572665	C5orf17	Q8NAS9	161 aa		6.22	□□□□□ -1.41
CIITA-208	ENST00000572665	OR10G9	Q8NGN4	311 aa		6.22	□□□□□ -1.41
CIITA-208	ENST00000572665	OR10G7	Q8NGN6	311 aa		6.22	□□□□□ -1.41
CIITA-208	ENST00000572665	IGLV9-49	A0A0B4J1Y8	123 aa		6.21	□□□□□ -1.42
CIITA-208	ENST00000572665	IFITM10	A6NMD0	228 aa		6.21	□□□□□ -1.42
CIITA-208	ENST00000572665	IBA57-AS1	B1ANH7	110 aa		6.21	□□□□□ -1.42
CIITA-208	ENST00000572665		F6UZH7	168 aa		6.21	□□□□□ -1.42
CIITA-208	ENST00000572665	CDC34	P49427	236 aa	Predicted RBP	6.21	□□□□□ -1.42
CIITA-208	ENST00000572665	LAGE3	Q14657	143 aa		6.21	□□□□□ -1.42
CIITA-208	ENST00000572665	SAPCD1	Q5SSQ6	148 aa		6.21	□□□□□ -1.42
CIITA-208	ENST00000572665	LELP1	Q5T871	98 aa		6.21	□□□□□ -1.42
CIITA-208	ENST00000572665	KCNRG	Q8N5I3	272 aa		6.21	□□□□□ -1.42
CIITA-208	ENST00000572665	OR2G3	Q8NGZ4	309 aa		6.21	□□□□□ -1.42
CIITA-208	ENST00000572665	PTH2	Q96A98	100 aa		6.21	□□□□□ -1.42
CIITA-208	ENST00000572665	TMEM70	Q9BUB7	260 aa		6.21	□□□□□ -1.42
CIITA-208	ENST00000572665	TMEM167B	Q9NRX6	74 aa		6.21	□□□□□ -1.42
CIITA-208	ENST00000572665	HSPG2	P98160	4391 aa		6.21	□□□□□ -1.42
CIITA-208	ENST00000572665	TRAV8-1	A0A0A6YYK1	113 aa		6.2	□□□□□ -1.42
CIITA-208	ENST00000572665	C1QB	P02746	253 aa		6.2	□□□□□ -1.42
CIITA-208	ENST00000572665	PRSS1	P07477	247 aa		6.2	□□□□□ -1.42
CIITA-208	ENST00000572665	SEC11B	P0C7V7	166 aa		6.2	□□□□□ -1.42
CIITA-208	ENST00000572665	STAG3L2	P0CL84	134 aa		6.2	□□□□□ -1.42
CIITA-208	ENST00000572665	STAG3L3	P0CL85	134 aa		6.2	□□□□□ -1.42
CIITA-208	ENST00000572665	ARL14EPL	P0DKL9	152 aa		6.2	□□□□□ -1.42
CIITA-208	ENST00000572665	XG	P55808	180 aa		6.2	□□□□□ -1.42
CIITA-208	ENST00000572665	LINC01547	P58512	204 aa	Predicted RBP	6.2	□□□□□ -1.42
CIITA-208	ENST00000572665	SERF2	P84101	59 aa		6.2	□□□□□ -1.42
CIITA-208	ENST00000572665	SMUG1	Q53HV7	270 aa		6.2	□□□□□ -1.42
CIITA-208	ENST00000572665	RPL7L1	Q6DKI1	246 aa	Known RBP	6.2	□□□□□ -1.42
CIITA-208	ENST00000572665	AKAP14	Q86UN6	197 aa		6.2	□□□□□ -1.42
CIITA-208	ENST00000572665	SLC25A29	Q8N8R3	303 aa		6.2	□□□□□ -1.42
CIITA-208	ENST00000572665	OCC1	Q8TAD7	63 aa		6.2	□□□□□ -1.42
CIITA-208	ENST00000572665	PSMG3	Q9BT73	122 aa	Predicted RBP	6.2	□□□□□ -1.42
CIITA-208	ENST00000572665	GTSF1L	Q9H1H1	148 aa		6.2	□□□□□ -1.42
CIITA-208	ENST00000572665	CYTL1	Q9NRR1	136 aa		6.2	□□□□□ -1.42
CIITA-208	ENST00000572665	TRAV8-3	A0A0A6YYJ7	113 aa		6.19	□□□□□ -1.42
CIITA-208	ENST00000572665	BORCS7-ASMT	A0A0B4J1R7	106 aa		6.19	□□□□□ -1.42
CIITA-208	ENST00000572665		A0A0D9SG52	128 aa		6.19	□□□□□ -1.42
CIITA-208	ENST00000572665	LOC100131303	A0A0U1RQF7	123 aa		6.19	□□□□□ -1.42
CIITA-208	ENST00000572665		A8MWV9	139 aa		6.19	□□□□□ -1.42
CIITA-208	ENST00000572665	RS1	O15537	224 aa		6.19	□□□□□ -1.42
CIITA-208	ENST00000572665	CXorf1	O96002	111 aa		6.19	□□□□□ -1.42
CIITA-208	ENST00000572665	GCG	P01275	180 aa		6.19	□□□□□ -1.42
CIITA-208	ENST00000572665	TCRA	P04437	139 aa		6.19	□□□□□ -1.42
CIITA-208	ENST00000572665	S100A4	P26447	101 aa	Known RBP	6.19	□□□□□ -1.42
CIITA-208	ENST00000572665	ATP6V0C	P27449	155 aa		6.19	□□□□□ -1.42
CIITA-208	ENST00000572665	KRTAP10-1	P60331	282 aa		6.19	□□□□□ -1.42
CIITA-208	ENST00000572665	RAB2A	P61019	212 aa		6.19	□□□□□ -1.42
CIITA-208	ENST00000572665	FLI1	Q01543	452 aa	Predicted RBP	6.19	□□□□□ -1.42
CIITA-208	ENST00000572665	CFAP126	Q5VTH2	177 aa		6.19	□□□□□ -1.42
CIITA-208	ENST00000572665		Q8N814	137 aa		6.19	□□□□□ -1.42
CIITA-208	ENST00000572665	CYB561D1	Q8N8Q1	229 aa		6.19	□□□□□ -1.42
CIITA-208	ENST00000572665	TMEM75	Q8N9X5	138 aa		6.19	□□□□□ -1.42
CIITA-208	ENST00000572665	HSD17B11	Q8NBQ5	300 aa		6.19	□□□□□ -1.42
CIITA-208	ENST00000572665	ATP6V0E2	Q8NHE4	81 aa		6.19	□□□□□ -1.42
CIITA-208	ENST00000572665	PSG8	Q9UQ74	426 aa		6.19	□□□□□ -1.42
CIITA-208	ENST00000572665	ABCA13	Q86UQ4	5058 aa		6.19	□□□□□ -1.42
CIITA-208	ENST00000572665		A0A087WWC5	75 aa		6.18	□□□□□ -1.42
CIITA-208	ENST00000572665	SMIM1	B2RUZ4	78 aa		6.18	□□□□□ -1.42
CIITA-208	ENST00000572665	HMGB3	O15347	200 aa	Known RBP	6.18	□□□□□ -1.42
CIITA-208	ENST00000572665	BCL2L11	O43521	198 aa		6.18	□□□□□ -1.42
CIITA-208	ENST00000572665	GCHFR	P30047	84 aa		6.18	□□□□□ -1.42
CIITA-208	ENST00000572665	FUS	P35637	526 aa	Known RBP eCLIP	6.18	□□□□□ -1.42
CIITA-208	ENST00000572665	FGF8	P55075	233 aa	Predicted RBP	6.18	□□□□□ -1.42
CIITA-208	ENST00000572665	GNG5	P63218	68 aa		6.18	□□□□□ -1.42
CIITA-208	ENST00000572665	ZFP2	Q6ZN57	461 aa		6.18	□□□□□ -1.42
CIITA-208	ENST00000572665	RMI2	Q96E14	147 aa		6.18	□□□□□ -1.42
CIITA-208	ENST00000572665	TVP23C	Q96ET8	276 aa		6.18	□□□□□ -1.42
CIITA-208	ENST00000572665	C9orf85	Q96MD7	179 aa		6.18	□□□□□ -1.42
CIITA-208	ENST00000572665	NKX6-2	Q9C056	277 aa	Predicted RBP	6.18	□□□□□ -1.42

Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms