RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 MED9Q9NWA0 146 aa13.68□□□□□ -0.22
NUP88-204ENST00000572290 VAX2Q9UIW0 290 aa13.68□□□□□ -0.22
NUP88-204ENST00000572290 A0A087WWL8 130 aa13.67□□□□□ -0.22
NUP88-204ENST00000572290 RAB19A4D1S5 217 aa13.67□□□□□ -0.22
NUP88-204ENST00000572290 TAGLN2P37802 199 aaKnown RBP13.67□□□□□ -0.22
NUP88-204ENST00000572290 OR10J3Q5JRS4 329 aa13.67□□□□□ -0.22
NUP88-204ENST00000572290 Q6ZRN7 208 aaPredicted RBP13.67□□□□□ -0.22
NUP88-204ENST00000572290 C14orf178Q8N769 122 aaPredicted RBP13.67□□□□□ -0.22
NUP88-204ENST00000572290 IGHV3-38A0A0C4DH36 116 aa13.66□□□□□ -0.22
NUP88-204ENST00000572290 IGLV2-8P01709 118 aa13.66□□□□□ -0.22
NUP88-204ENST00000572290 CRYGDP07320 174 aa13.66□□□□□ -0.22
NUP88-204ENST00000572290 GNG4P50150 75 aa13.66□□□□□ -0.22
NUP88-204ENST00000572290 LELP1Q5T871 98 aa13.66□□□□□ -0.22
NUP88-204ENST00000572290 ALKAL2Q6UX46 152 aa13.66□□□□□ -0.22
NUP88-204ENST00000572290 NFE4Q86UQ8 179 aa13.66□□□□□ -0.22
NUP88-204ENST00000572290 SMIM12Q96EX1 92 aa13.66□□□□□ -0.22
NUP88-204ENST00000572290 BOLA1Q9Y3E2 137 aa13.66□□□□□ -0.22
NUP88-204ENST00000572290 TNFRSF18Q9Y5U5 241 aa13.66□□□□□ -0.22
NUP88-204ENST00000572290 A0A1B0GVG6 124 aa13.65□□□□□ -0.22
NUP88-204ENST00000572290 SNAI2O43623 268 aa13.65□□□□□ -0.22
NUP88-204ENST00000572290 LINC00694P0DN24 101 aa13.65□□□□□ -0.22
NUP88-204ENST00000572290 C10orf126Q8N4M7 172 aa13.65□□□□□ -0.22
NUP88-204ENST00000572290 OR10AG1Q8NH19 301 aa13.65□□□□□ -0.22
NUP88-204ENST00000572290 DAZAP1Q96EP5 407 aaKnown RBP13.65□□□□□ -0.22
NUP88-204ENST00000572290 SSBP4Q9BWG4 385 aaPredicted RBP13.65□□□□□ -0.22
NUP88-204ENST00000572290 MSRB1Q9NZV6 116 aa13.65□□□□□ -0.22
NUP88-204ENST00000572290 Q9UF83 564 aa13.65□□□□□ -0.22
NUP88-204ENST00000572290 OR5AL1P0C617 328 aa13.64□□□□□ -0.23
NUP88-204ENST00000572290 BLOC1S1P78537 153 aa13.64□□□□□ -0.23
NUP88-204ENST00000572290 LINC01556Q5JQF7 62 aa13.64□□□□□ -0.23
NUP88-204ENST00000572290 C16orf90A8MZG2 172 aa13.63□□□□□ -0.23
NUP88-204ENST00000572290 SPANXN1Q5VSR9 72 aa13.63□□□□□ -0.23
NUP88-204ENST00000572290 MUC21A0A0G2JKD1 596 aa13.62□□□□□ -0.23
NUP88-204ENST00000572290 MUC21A0A140T8X8 626 aa13.62□□□□□ -0.23
NUP88-204ENST00000572290 NKX2-5P52952 324 aaPredicted RBP13.62□□□□□ -0.23
NUP88-204ENST00000572290 SPATA12Q7Z6I5 190 aa13.62□□□□□ -0.23
NUP88-204ENST00000572290 LRP1BQ9NZR2 4599 aa13.62□□□□□ -0.23
NUP88-204ENST00000572290 RYR1P21817 5038 aa13.61□□□□□ -0.23
NUP88-204ENST00000572290 TRBV20OR9-2A0A075B6H5 130 aa13.61□□□□□ -0.23
NUP88-204ENST00000572290 C19orf71A6NCJ1 209 aa13.61□□□□□ -0.23
NUP88-204ENST00000572290 RPS20P60866 119 aaKnown RBP13.61□□□□□ -0.23
NUP88-204ENST00000572290 OR2D3Q8NGH3 330 aa13.61□□□□□ -0.23
NUP88-204ENST00000572290 BIN3Q9NQY0 253 aa13.61□□□□□ -0.23
NUP88-204ENST00000572290 TRBV10-1A0A0K0K1A3 114 aa13.6□□□□□ -0.23
NUP88-204ENST00000572290 P01737 135 aa13.59□□□□□ -0.23
NUP88-204ENST00000572290 IGHV3-30P01768 117 aa13.59□□□□□ -0.23
NUP88-204ENST00000572290 IGHV3-33P01772 117 aa13.59□□□□□ -0.23
NUP88-204ENST00000572290 IGHV3-30-3P0DP02 117 aa13.59□□□□□ -0.23
NUP88-204ENST00000572290 IGHV3-30-5P0DP03 117 aa13.59□□□□□ -0.23
NUP88-204ENST00000572290 GZMBP10144 247 aa13.59□□□□□ -0.23
NUP88-204ENST00000572290 RAB4BP61018 213 aa13.59□□□□□ -0.23
NUP88-204ENST00000572290 SSTP61278 116 aa13.59□□□□□ -0.23
NUP88-204ENST00000572290 A0A087WWC5 75 aa13.58□□□□□ -0.24
NUP88-204ENST00000572290 RBFOX3A6NFN3 312 aa13.58□□□□□ -0.24
NUP88-204ENST00000572290 IBA57-AS1B1ANH7 110 aa13.58□□□□□ -0.24
NUP88-204ENST00000572290 IGLC6P0CF74 106 aa13.58□□□□□ -0.24
NUP88-204ENST00000572290 ERVFC1-1P60608 527 aa13.58□□□□□ -0.24
NUP88-204ENST00000572290 RPL36AP83881 106 aaKnown RBP13.58□□□□□ -0.24
NUP88-204ENST00000572290 ZNF56Q15929 161 aa13.58□□□□□ -0.24
NUP88-204ENST00000572290 FER1L6-AS1Q8NA97 138 aa13.58□□□□□ -0.24
NUP88-204ENST00000572290 LYPD6BQ8NI32 183 aa13.58□□□□□ -0.24
NUP88-204ENST00000572290 RPL36ALQ969Q0 106 aaKnown RBP13.58□□□□□ -0.24
NUP88-204ENST00000572290 TPPP3Q9BW30 176 aa13.58□□□□□ -0.24
NUP88-204ENST00000572290 DNAH5Q8TE73 4624 aa13.58□□□□□ -0.24
NUP88-204ENST00000572290 XKRY2A2RUG3 117 aa13.57□□□□□ -0.24
NUP88-204ENST00000572290 EREGO14944 169 aa13.57□□□□□ -0.24
NUP88-204ENST00000572290 KRTAP10-2P60368 255 aa13.57□□□□□ -0.24
NUP88-204ENST00000572290 SMIM17P0DL12 118 aa13.56□□□□□ -0.24
NUP88-204ENST00000572290 AP1S3Q96PC3 154 aa13.56□□□□□ -0.24
NUP88-204ENST00000572290 TRBV7-3A0A075B6L6 115 aa13.55□□□□□ -0.24
NUP88-204ENST00000572290 TMEM250H0YL14 139 aa13.55□□□□□ -0.24
NUP88-204ENST00000572290 UBE2D3P61077 147 aa13.55□□□□□ -0.24
NUP88-204ENST00000572290 UBE2D2P62837 147 aa13.55□□□□□ -0.24
NUP88-204ENST00000572290 OR10G8Q8NGN5 311 aa13.55□□□□□ -0.24
NUP88-204ENST00000572290 F5H697 171 aa13.54□□□□□ -0.24
NUP88-204ENST00000572290 CACNG7P62955 275 aa13.54□□□□□ -0.24
NUP88-204ENST00000572290 NUDT10Q8NFP7 164 aa13.54□□□□□ -0.24
NUP88-204ENST00000572290 NUDT11Q96G61 164 aa13.54□□□□□ -0.24
NUP88-204ENST00000572290 KIF25-AS1Q9Y6Z4 181 aa13.54□□□□□ -0.24
NUP88-204ENST00000572290 A0A087WTM6 91 aa13.53□□□□□ -0.24
NUP88-204ENST00000572290 F2Z2F3 143 aa13.53□□□□□ -0.24
NUP88-204ENST00000572290 NEXN-AS1Q8NBZ9 246 aa13.53□□□□□ -0.24
NUP88-204ENST00000572290 OCC1Q8TAD7 63 aa13.53□□□□□ -0.24
NUP88-204ENST00000572290 Q9HAA7 133 aa13.53□□□□□ -0.24
NUP88-204ENST00000572290 K7EN84 100 aa13.52□□□□□ -0.25
NUP88-204ENST00000572290 TOR2AQ5JU69 321 aa13.52□□□□□ -0.25
NUP88-204ENST00000572290 Q8N3U1 123 aa13.52□□□□□ -0.25
NUP88-204ENST00000572290 PGPEP1Q9NXJ5 209 aa13.52□□□□□ -0.25
NUP88-204ENST00000572290 PSCAO43653 123 aa13.51□□□□□ -0.25
NUP88-204ENST00000572290 LAGE3Q14657 143 aa13.51□□□□□ -0.25
NUP88-204ENST00000572290 LYZL1Q6UWQ5 148 aa13.51□□□□□ -0.25
NUP88-204ENST00000572290 EIF5A2Q9GZV4 153 aaKnown RBP13.51□□□□□ -0.25
NUP88-204ENST00000572290 RNASE7Q9H1E1 156 aaKnown RBP13.51□□□□□ -0.25
NUP88-204ENST00000572290 RPP21Q9H633 154 aaKnown RBP13.51□□□□□ -0.25
NUP88-204ENST00000572290 CEBPGP53567 150 aa13.5□□□□□ -0.25
NUP88-204ENST00000572290 DAZ4Q86SG3 579 aaKnown RBP13.5□□□□□ -0.25
NUP88-204ENST00000572290 DAZ3Q9NR90 486 aaKnown RBP13.5□□□□□ -0.25
NUP88-204ENST00000572290 MGPP08493 103 aa13.49□□□□□ -0.25
NUP88-204ENST00000572290 NIT1Q86X76 327 aa13.49□□□□□ -0.25
NUP88-204ENST00000572290 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms