RNA–Protein interactions for RNA: ENST00000571545.1

CIITA-207, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 3

Gene CIITA, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-207ENST00000571545 KANTRA0A1W2PQU2 76 aa6.54□□□□□ -1.36
CIITA-207ENST00000571545 GAGE12JA6NER3 117 aa6.54□□□□□ -1.36
CIITA-207ENST00000571545 HMSDA8MTL9 139 aa6.54□□□□□ -1.36
CIITA-207ENST00000571545 M0R036 132 aa6.54□□□□□ -1.36
CIITA-207ENST00000571545 IGHV3-30P01768 117 aa6.54□□□□□ -1.36
CIITA-207ENST00000571545 IGHV3-33P01772 117 aa6.54□□□□□ -1.36
CIITA-207ENST00000571545 CXCL1P09341 107 aa6.54□□□□□ -1.36
CIITA-207ENST00000571545 ARMS2P0C7Q2 107 aa6.54□□□□□ -1.36
CIITA-207ENST00000571545 IGHV3-30-3P0DP02 117 aa6.54□□□□□ -1.36
CIITA-207ENST00000571545 IGHV3-30-5P0DP03 117 aa6.54□□□□□ -1.36
CIITA-207ENST00000571545 GAGE1Q13065 139 aa6.54□□□□□ -1.36
CIITA-207ENST00000571545 GAGE4Q13068 117 aa6.54□□□□□ -1.36
CIITA-207ENST00000571545 GAGE5Q13069 117 aa6.54□□□□□ -1.36
CIITA-207ENST00000571545 GAGE13Q4V321 117 aa6.54□□□□□ -1.36
CIITA-207ENST00000571545 FAM74A4Q5TZK3 123 aa6.54□□□□□ -1.36
CIITA-207ENST00000571545 UFSP1Q6NVU6 142 aa6.54□□□□□ -1.36
CIITA-207ENST00000571545 KCNRGQ8N5I3 272 aa6.54□□□□□ -1.36
CIITA-207ENST00000571545 Q8N814 137 aa6.54□□□□□ -1.36
CIITA-207ENST00000571545 LRCOL1A6NCL2 159 aa6.53□□□□□ -1.36
CIITA-207ENST00000571545 G3V3Q6 166 aa6.53□□□□□ -1.36
CIITA-207ENST00000571545 M0R381 172 aa6.53□□□□□ -1.36
CIITA-207ENST00000571545 PKIAP61925 76 aa6.53□□□□□ -1.36
CIITA-207ENST00000571545 RPL36AP83881 106 aaKnown RBP6.53□□□□□ -1.36
CIITA-207ENST00000571545 ELOBQ15370 118 aa6.53□□□□□ -1.36
CIITA-207ENST00000571545 SFT2D1Q8WV19 159 aa6.53□□□□□ -1.36
CIITA-207ENST00000571545 RPL36ALQ969Q0 106 aaKnown RBP6.53□□□□□ -1.36
CIITA-207ENST00000571545 SFRP2Q96HF1 295 aa6.53□□□□□ -1.36
CIITA-207ENST00000571545 CYTL1Q9NRR1 136 aa6.53□□□□□ -1.36
CIITA-207ENST00000571545 TEX46H3BTG2 121 aa6.52□□□□□ -1.37
CIITA-207ENST00000571545 BCL2L11O43521 198 aa6.52□□□□□ -1.37
CIITA-207ENST00000571545 PAGE4O60829 102 aa6.52□□□□□ -1.37
CIITA-207ENST00000571545 C1QBP02746 253 aa6.52□□□□□ -1.37
CIITA-207ENST00000571545 EIF5AL1Q6IS14 154 aaKnown RBP6.52□□□□□ -1.37
CIITA-207ENST00000571545 FAM213BQ8TBF2 198 aa6.52□□□□□ -1.37
CIITA-207ENST00000571545 MBD3L1Q8WWY6 194 aa6.52□□□□□ -1.37
CIITA-207ENST00000571545 ZNF471Q9BX82 626 aaPredicted RBP6.52□□□□□ -1.37
CIITA-207ENST00000571545 DYNC1H1Q14204 4646 aaKnown RBP6.51□□□□□ -1.37
CIITA-207ENST00000571545 TRBV7-3A0A075B6L6 115 aa6.51□□□□□ -1.37
CIITA-207ENST00000571545 A0A087WX48 190 aa6.51□□□□□ -1.37
CIITA-207ENST00000571545 GRIFINA4D1Z8 144 aa6.51□□□□□ -1.37
CIITA-207ENST00000571545 H2AFB1P0C5Y9 115 aa6.51□□□□□ -1.37
CIITA-207ENST00000571545 CRIP1P50238 77 aa6.51□□□□□ -1.37
CIITA-207ENST00000571545 XGP55808 180 aa6.51□□□□□ -1.37
CIITA-207ENST00000571545 KRTAP10-1P60331 282 aa6.51□□□□□ -1.37
CIITA-207ENST00000571545 Q5VSD8 79 aa6.51□□□□□ -1.37
CIITA-207ENST00000571545 MANBALQ9NQG1 85 aa6.51□□□□□ -1.37
CIITA-207ENST00000571545 ABCA13Q86UQ4 5058 aa6.5□□□□□ -1.37
CIITA-207ENST00000571545 A0A087WWL8 130 aa6.5□□□□□ -1.37
CIITA-207ENST00000571545 GHRHP01286 108 aa6.5□□□□□ -1.37
CIITA-207ENST00000571545 RAB5CP51148 216 aa6.5□□□□□ -1.37
CIITA-207ENST00000571545 RAB4BP61018 213 aa6.5□□□□□ -1.37
CIITA-207ENST00000571545 Q0VG73 95 aa6.5□□□□□ -1.37
CIITA-207ENST00000571545 ZNF56Q15929 161 aa6.5□□□□□ -1.37
CIITA-207ENST00000571545 TMEM97Q5BJF2 176 aa6.5□□□□□ -1.37
CIITA-207ENST00000571545 BAGE2Q86Y30 109 aa6.5□□□□□ -1.37
CIITA-207ENST00000571545 C14orf178Q8N769 122 aaPredicted RBP6.5□□□□□ -1.37
CIITA-207ENST00000571545 SAMD10Q9BYL1 202 aa6.5□□□□□ -1.37
CIITA-207ENST00000571545 JPT2Q9H910 190 aa6.5□□□□□ -1.37
CIITA-207ENST00000571545 TMSB15BA0A087X1C1 80 aa6.49□□□□□ -1.37
CIITA-207ENST00000571545 SCO2A0A1W2PP80 73 aa6.49□□□□□ -1.37
CIITA-207ENST00000571545 OR5AL1P0C617 328 aa6.49□□□□□ -1.37
CIITA-207ENST00000571545 SMIM17P0DL12 118 aa6.49□□□□□ -1.37
CIITA-207ENST00000571545 XP32Q5T750 250 aa6.49□□□□□ -1.37
CIITA-207ENST00000571545 SPANXN1Q5VSR9 72 aa6.49□□□□□ -1.37
CIITA-207ENST00000571545 Q6ZSN1 163 aa6.49□□□□□ -1.37
CIITA-207ENST00000571545 NIT1Q86X76 327 aa6.49□□□□□ -1.37
CIITA-207ENST00000571545 OR10G8Q8NGN5 311 aa6.49□□□□□ -1.37
CIITA-207ENST00000571545 SMIM12Q96EX1 92 aa6.49□□□□□ -1.37
CIITA-207ENST00000571545 AP1S3Q96PC3 154 aa6.49□□□□□ -1.37
CIITA-207ENST00000571545 XKRY2A2RUG3 117 aa6.48□□□□□ -1.37
CIITA-207ENST00000571545 SMLR1H3BR10 107 aa6.48□□□□□ -1.37
CIITA-207ENST00000571545 SNAI2O43623 268 aa6.48□□□□□ -1.37
CIITA-207ENST00000571545 CRPP02741 224 aa6.48□□□□□ -1.37
CIITA-207ENST00000571545 INAFM2P0DMQ5 153 aa6.48□□□□□ -1.37
CIITA-207ENST00000571545 FUSP35637 526 aaKnown RBP eCLIP6.48□□□□□ -1.37
CIITA-207ENST00000571545 RPS20P60866 119 aaKnown RBP6.48□□□□□ -1.37
CIITA-207ENST00000571545 UBE2D3P61077 147 aa6.48□□□□□ -1.37
CIITA-207ENST00000571545 UBE2D2P62837 147 aa6.48□□□□□ -1.37
CIITA-207ENST00000571545 C14orf177Q52M58 125 aa6.48□□□□□ -1.37
CIITA-207ENST00000571545 DAZ4Q86SG3 579 aaKnown RBP6.48□□□□□ -1.37
CIITA-207ENST00000571545 Q8N3U1 123 aa6.48□□□□□ -1.37
CIITA-207ENST00000571545 Q8N976 141 aa6.48□□□□□ -1.37
CIITA-207ENST00000571545 MLST8Q9BVC4 326 aa6.48□□□□□ -1.37
CIITA-207ENST00000571545 BIN3Q9NQY0 253 aa6.48□□□□□ -1.37
CIITA-207ENST00000571545 DAZ3Q9NR90 486 aaKnown RBP6.48□□□□□ -1.37
CIITA-207ENST00000571545 TRAV1-1A0A0B4J248 108 aa6.47□□□□□ -1.37
CIITA-207ENST00000571545 RBFOX3A6NFN3 312 aa6.47□□□□□ -1.37
CIITA-207ENST00000571545 IFNA1P01562 189 aa6.47□□□□□ -1.37
CIITA-207ENST00000571545 PRR27Q6MZM9 219 aa6.47□□□□□ -1.37
CIITA-207ENST00000571545 TMUB2Q71RG4 321 aa6.47□□□□□ -1.37
CIITA-207ENST00000571545 C11orf52Q96A22 123 aa6.47□□□□□ -1.37
CIITA-207ENST00000571545 DAZAP1Q96EP5 407 aaKnown RBP6.47□□□□□ -1.37
CIITA-207ENST00000571545 SSBP4Q9BWG4 385 aaPredicted RBP6.47□□□□□ -1.37
CIITA-207ENST00000571545 HSPG2P98160 4391 aa6.47□□□□□ -1.37
CIITA-207ENST00000571545 IGKV2D-24A0A075B6R9 120 aa6.46□□□□□ -1.38
CIITA-207ENST00000571545 TRBV6-8A0A0A6YYG3 113 aa6.46□□□□□ -1.38
CIITA-207ENST00000571545 A0A1B0GV50 99 aa6.46□□□□□ -1.38
CIITA-207ENST00000571545 H7C1H1 209 aa6.46□□□□□ -1.38
CIITA-207ENST00000571545 PDE6DO43924 150 aa6.46□□□□□ -1.38
CIITA-207ENST00000571545 TAGLN2P37802 199 aaKnown RBP6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms