RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 FOXA3P55318 350 aaPredicted RBP14.41□□□□□ -0.1
VPS53-210ENST00000571456 OR10G8Q8NGN5 311 aa14.41□□□□□ -0.1
VPS53-210ENST00000571456 OR10AG1Q8NH19 301 aa14.41□□□□□ -0.1
VPS53-210ENST00000571456 TSKUQ8WUA8 353 aa14.41□□□□□ -0.1
VPS53-210ENST00000571456 CNFNQ9BYD5 112 aa14.41□□□□□ -0.1
VPS53-210ENST00000571456 TMEM218A2RU14 115 aa14.4□□□□□ -0.1
VPS53-210ENST00000571456 IGHV3-53P01767 116 aa14.4□□□□□ -0.1
VPS53-210ENST00000571456 CRYBA4P53673 196 aa14.4□□□□□ -0.1
VPS53-210ENST00000571456 LGALS9CQ6DKI2 356 aa14.4□□□□□ -0.1
VPS53-210ENST00000571456 TRBV6-4A0A1B0GX49 114 aa14.39□□□□□ -0.11
VPS53-210ENST00000571456 PPP1R2P9O14990 202 aa14.39□□□□□ -0.11
VPS53-210ENST00000571456 PAX4O43316 350 aa14.39□□□□□ -0.11
VPS53-210ENST00000571456 GZMBP10144 247 aa14.39□□□□□ -0.11
VPS53-210ENST00000571456 AP1S3Q96PC3 154 aa14.39□□□□□ -0.11
VPS53-210ENST00000571456 TPPP3Q9BW30 176 aa14.39□□□□□ -0.11
VPS53-210ENST00000571456 TRGC1P0CF51 173 aa14.38□□□□□ -0.11
VPS53-210ENST00000571456 P0DMU3 169 aa14.38□□□□□ -0.11
VPS53-210ENST00000571456 FAM231AP0DMU4 169 aa14.38□□□□□ -0.11
VPS53-210ENST00000571456 FAM231CP0DMU5 169 aa14.38□□□□□ -0.11
VPS53-210ENST00000571456 GATA1P15976 413 aaPredicted RBP14.38□□□□□ -0.11
VPS53-210ENST00000571456 LYZL1Q6UWQ5 148 aa14.38□□□□□ -0.11
VPS53-210ENST00000571456 BORCS7Q96B45 105 aa14.38□□□□□ -0.11
VPS53-210ENST00000571456 SEC11CQ9BY50 192 aa14.38□□□□□ -0.11
VPS53-210ENST00000571456 RHOHQ15669 191 aa14.37□□□□□ -0.11
VPS53-210ENST00000571456 SH2D6Q7Z4S9 175 aa14.37□□□□□ -0.11
VPS53-210ENST00000571456 VSIG2Q96IQ7 327 aa14.37□□□□□ -0.11
VPS53-210ENST00000571456 PRADC1Q9BSG0 188 aa14.37□□□□□ -0.11
VPS53-210ENST00000571456 V9GYV3 84 aa14.37□□□□□ -0.11
VPS53-210ENST00000571456 DNAH6Q9C0G6 4158 aa14.36□□□□□ -0.11
VPS53-210ENST00000571456 F8W036 122 aa14.36□□□□□ -0.11
VPS53-210ENST00000571456 SMIM17P0DL12 118 aa14.36□□□□□ -0.11
VPS53-210ENST00000571456 MRPL23Q16540 153 aaKnown RBP14.36□□□□□ -0.11
VPS53-210ENST00000571456 UFSP1Q6NVU6 142 aa14.36□□□□□ -0.11
VPS53-210ENST00000571456 ICOSQ9Y6W8 199 aa14.36□□□□□ -0.11
VPS53-210ENST00000571456 CRYGDP07320 174 aa14.35□□□□□ -0.11
VPS53-210ENST00000571456 GTSF1Q8WW33 167 aa14.35□□□□□ -0.11
VPS53-210ENST00000571456 ANAPC16Q96DE5 110 aa14.35□□□□□ -0.11
VPS53-210ENST00000571456 KRTAP4-5Q9BYR2 181 aa14.35□□□□□ -0.11
VPS53-210ENST00000571456 A0A0J9YY99 117 aa14.34□□□□□ -0.11
VPS53-210ENST00000571456 NUDT3O95989 172 aa14.34□□□□□ -0.11
VPS53-210ENST00000571456 MT-ND4LP03901 98 aa14.34□□□□□ -0.11
VPS53-210ENST00000571456 FAM3BP58499 235 aaPredicted RBP14.34□□□□□ -0.11
VPS53-210ENST00000571456 RNF212Q495C1 297 aa14.34□□□□□ -0.11
VPS53-210ENST00000571456 NAT8BQ9UHF3 227 aa14.34□□□□□ -0.11
VPS53-210ENST00000571456 HIGD1CA8MV81 97 aa14.33□□□□□ -0.12
VPS53-210ENST00000571456 NTF3P20783 257 aa14.33□□□□□ -0.12
VPS53-210ENST00000571456 FAM74A4Q5TZK3 123 aa14.33□□□□□ -0.12
VPS53-210ENST00000571456 SMIM15Q7Z3B0 74 aa14.33□□□□□ -0.12
VPS53-210ENST00000571456 CCL18P55774 89 aa14.32□□□□□ -0.12
VPS53-210ENST00000571456 RAB4BP61018 213 aa14.32□□□□□ -0.12
VPS53-210ENST00000571456 SLC25A29Q8N8R3 303 aa14.32□□□□□ -0.12
VPS53-210ENST00000571456 JPT2Q9H910 190 aa14.32□□□□□ -0.12
VPS53-210ENST00000571456 TRBV10-1A0A0K0K1A3 114 aa14.31□□□□□ -0.12
VPS53-210ENST00000571456 A0A1B0GUT8 65 aa14.31□□□□□ -0.12
VPS53-210ENST00000571456 SMIM27A0A1W2PRY6 76 aa14.31□□□□□ -0.12
VPS53-210ENST00000571456 K7EQD1 137 aa14.31□□□□□ -0.12
VPS53-210ENST00000571456 SRIP30626 198 aa14.31□□□□□ -0.12
VPS53-210ENST00000571456 TWIST1Q15672 202 aa14.31□□□□□ -0.12
VPS53-210ENST00000571456 SAMD10Q9BYL1 202 aa14.31□□□□□ -0.12
VPS53-210ENST00000571456 FAT2Q9NYQ8 4349 aa14.31□□□□□ -0.12
VPS53-210ENST00000571456 A0A087WWL8 130 aa14.3□□□□□ -0.12
VPS53-210ENST00000571456 A0A096LPF7 62 aa14.3□□□□□ -0.12
VPS53-210ENST00000571456 IGHV3-73A0A0B4J1V6 119 aa14.3□□□□□ -0.12
VPS53-210ENST00000571456 MUC21A0A0G2JKD1 596 aa14.3□□□□□ -0.12
VPS53-210ENST00000571456 MUC21A0A140T8X8 626 aa14.3□□□□□ -0.12
VPS53-210ENST00000571456 GYPEP15421 78 aa14.3□□□□□ -0.12
VPS53-210ENST00000571456 ADCYAP1P18509 176 aa14.3□□□□□ -0.12
VPS53-210ENST00000571456 C10orf91Q5T1B1 145 aa14.3□□□□□ -0.12
VPS53-210ENST00000571456 PGLYRP4Q96LB8 373 aa14.3□□□□□ -0.12
VPS53-210ENST00000571456 DPH3P1Q9H4G8 78 aa14.3□□□□□ -0.12
VPS53-210ENST00000571456 DYNC1H1Q14204 4646 aaKnown RBP14.3□□□□□ -0.12
VPS53-210ENST00000571456 A0A1B0GW15 77 aa14.29□□□□□ -0.12
VPS53-210ENST00000571456 RIGQ13278 110 aa14.29□□□□□ -0.12
VPS53-210ENST00000571456 NEGR1Q7Z3B1 354 aa14.29□□□□□ -0.12
VPS53-210ENST00000571456 C14orf178Q8N769 122 aaPredicted RBP14.29□□□□□ -0.12
VPS53-210ENST00000571456 CARHSP1Q9Y2V2 147 aaKnown RBP14.29□□□□□ -0.12
VPS53-210ENST00000571456 KIF25-AS1Q9Y6Z4 181 aa14.29□□□□□ -0.12
VPS53-210ENST00000571456 DNAH2Q9P225 4427 aa14.28□□□□□ -0.12
VPS53-210ENST00000571456 H7C1H1 209 aa14.28□□□□□ -0.12
VPS53-210ENST00000571456 ZNF56Q15929 161 aa14.28□□□□□ -0.12
VPS53-210ENST00000571456 UBE2DNLQ8IWF7 75 aa14.28□□□□□ -0.12
VPS53-210ENST00000571456 NUP35Q8NFH5 326 aa14.28□□□□□ -0.12
VPS53-210ENST00000571456 FRZBQ92765 325 aa14.28□□□□□ -0.12
VPS53-210ENST00000571456 CTDSP1Q9GZU7 261 aa14.28□□□□□ -0.12
VPS53-210ENST00000571456 DNAH11Q96DT5 4516 aa14.28□□□□□ -0.12
VPS53-210ENST00000571456 HERC1Q15751 4861 aa14.27□□□□□ -0.12
VPS53-210ENST00000571456 SSTP61278 116 aa14.27□□□□□ -0.13
VPS53-210ENST00000571456 NDUFA5Q16718 116 aa14.27□□□□□ -0.13
VPS53-210ENST00000571456 LINC00336Q6ZUF6 198 aa14.27□□□□□ -0.13
VPS53-210ENST00000571456 MSRB1Q9NZV6 116 aa14.27□□□□□ -0.13
VPS53-210ENST00000571456 A0A1B0GVY2 172 aa14.26□□□□□ -0.13
VPS53-210ENST00000571456 F5H697 171 aa14.26□□□□□ -0.13
VPS53-210ENST00000571456 S100A8P05109 93 aa14.26□□□□□ -0.13
VPS53-210ENST00000571456 TIRAPP58753 221 aa14.26□□□□□ -0.13
VPS53-210ENST00000571456 EVI2AP22794 236 aa14.25□□□□□ -0.13
VPS53-210ENST00000571456 IMMP2LQ96T52 175 aa14.25□□□□□ -0.13
VPS53-210ENST00000571456 DNAH17Q9UFH2 4485 aa14.24□□□□□ -0.13
VPS53-210ENST00000571456 LINC00315P59091 139 aa14.24□□□□□ -0.13
VPS53-210ENST00000571456 RPL36AP83881 106 aaKnown RBP14.24□□□□□ -0.13
VPS53-210ENST00000571456 Q6ZSN1 163 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms